RESEARCH PUBLICATIONS (Updated in Mar 2025)
* Co-first author; #,! Co-corresponding author
∙ Yi Zhang, Shuya Tan, Jin Hee Kim, Jie Cao, Yaning Zhao, Zhenpei Pang, Junjie Liu, Yonglun Lv, Feng Ding, Jeongsik Kim, Hye Ryun Woo, Xinli Xia, Hongwei Guo, Zhonghai Li (2025) The kinase ATM delays Arabidopsis leaf senescence by stabilizing the phosphatase MKP2 in a phosphorylation-dependent matter. Plant Cell, 37(4), koaf066
∙ Gyeongik Ahn, In Jung Jung, Gyeong-Im Shin, Song Yi Jeong, Myung Geun Ji, Jin-Sung Huh, Ji-Won Hwang, Jeongsik Kim, Joon-Yung Cha, Sang Yeol Lee, Min Gab Kim, Woe-Yeon Kim (2025) The core morning clock component CCA1 enhances UPR target gene expression to facilitate ER stress recovery. Plant Commun, 6(4),101284
Phan Phuong Thao Doan, Hue Huong Vuong, Jeongsik Kim (2024) Genetic Foundation of Leaf Senescence: Insights from Natural and Cultivated Plant Diversity. Plants, 13(23), 3405
∙ Lanshuo Wang, Yueyue Yuan, Jeongsik Kim (2024) Molecular Genetic Insights into the Stress Responses and Cultivation Management of Zoysiagrass: Illuminating the Pathways for Turf Improvement. Agriculture, 14(10), 1718
∙ Jae Il Lyu*, Jin Hee Kim*,!, Nguyen Nguyen Chuong, Phan Phuong Thao Doan, Hyosub Chu, Seung Hee Baek, Pyung Ok Lim, Jeongsik Kim! (2024) ACCELERATED CELL DEATH 6 is a crucial genetic factor shaping the natural diversity of age- and salicylic acid-induced leaf senescence in Arabidopsis. Physiol Plant, 176:e14507
∙Jin Hee Kim, Mi-Young Park, Lanshuo Wang, Phan Phuong Thao Doan, Yueyue Yuan, Hyo-Yeon Lee & Jeongsik Kim (2024) Efficient CRISPR/Cas9-mediated gene editing of the ZjEIN2 gene in Zoysia japonica, Plant Biotechnol Rep, 18:2, 253-262
∙ Jin Hee Kim, Jeongsik Kim (2023) Comprehensive analysis of the chloroplast genome and phylogenetic relationships of Sasa quelpaertensis Nakai, Mitochondrial DNA B Resour, 9:88-93
∙ Lanshuo Wang*, Phan Phuong Thao Doan*, Nguyen Nguyen Chuong, Jin Hee Kim!, Jeongsik Kim! (2023) Comprehensive transcriptomic analysis of age-, dark-, and salt-induced senescence reveals underlying mechanisms and key regulators of leaf senescence in Zoysia japonica, Front. Plant Sci., 1170808
∙ Gyeongik Ahn, Hee Jin Park, Song Yi Jeong, Gyeong-Im Shin, Myung Geun Ji, Joon-Yung Cha, Jeongsik Kim, Min Gab Kim, Dae-Jin Yun, Woe-Yeon Kim (2023) HOS15 represses flowering by promoting GIGANTEA degradation in response to low temperature in Arabidopsis, Plant Commun, 100570
∙ Nguyen Nguyen Chuong*, Phan Phuong Thao Doan*, Lanshuo Wang, Jin Hee Kim!, Jeongsik Kim! (2023) Current Insights into m6A RNA Methylation and Its Emerging Role in Plant Circadian Clock, Plants (Basel), 12(3):624
∙ Joo-Hee Hwang*, Jeongsik Kim*, In O Sun, Tae Hee Lee, Kyung Min Chung, Chang-Seop Lee (2022) New genotypes and diversity of Orientia tsutsugamushi DNA samples from patients with scrub typhus in South Korea as determined by multilocus sequence typing. Am J Trop Med Hyg 107(2):420-426, tpmd210850.
∙ Joon-Yung Cha*, Jeongsik Kim*, Song Yi Jeong, Gyeong-Im Shin, Myung Geun Ji, Ji-Won Hwang, Laila Khaleda, Xueji Liao, Gyeongik Ahn, Hee-Jin Park, Dong Young Kim, Jose M Pardo, Sang Yeol Lee, Dae-Jin Yun, David E Somers, Woe-Yeon Kim (2022) The Na+/H+ antiporter SALT OVERLY SENSITIVE 1 regulates salt compensation of circadian rhythms by stabilizing GIGANTEA in Arabidopsis. Proc Natl Acad Sci U S A 119(33):e2207275119.
∙ Sung-Jin Park, Sanghoon Park, Yongmin Kim, Do Young Hyeon, Hyunsoo Park, Junyong Jeong, Ukcheol Jeong, Yeong Seon Yoon, Daesang You, Junmin Kwak, Rupak Timilsina, Daehee Hwang, Jeongsik Kim, Hye Ryun Woo (2022) Ethylene responsive factor34 mediates stress-induced leaf senescence by regulating salt stress-responsive genes. Plant Cell Environ 45:1719-1733
∙ Phan Phuong Thao Doan, Jin Hee Kim, Jeongsik Kim (2022) Rapid Investigation of Functional Roles of Genes in Regulation of Leaf Senescence Using Arabidopsis Protoplasts. Front Plant Sci, 13:818239. doi: 10.3389/fpls.2022.818239
∙ Jin Hee Kim, Phan Phuong Thao Doan, Hyo‑Yeon Lee, Jeongsik Kim (2022) Transient gene expression system in zoysiagrass leaf mesophyll protoplasts. Plant Biotechnol Rep. 16:113–121.
∙ Zhonghai Li, Jin Hee Kim, Jeongsik Kim, Jae Il Lyu, Yi Zhang, Hongwei Guo, Hong Gil Nam, Hye Ryun Woo (2020) ATM suppresses leaf senescence triggered by DNA double-strand break through epigenetic control of senescence-associated genes in Arabidopsis. New Phytol., 227(2):473-484.
∙ Zhi-Fang Zuo, Hong-Gyu Kang, Quan-Chun Hong, Mi-Young Park, Hyeon-Jin Sun, Jeongsik Kim, Pill-Soon Song, Hyo-Yeon Lee (2020) A novel basic helix-loop-helix transcription factor, ZjICE2 from Zoysia japonica confers abiotic stress tolerance to transgenic plants via activating the DREB/CBF regulon and enhancing ROS scavenging. Plant Mol Biol. 102(4-5):447-462.
∙ Jeongsik Kim*,# (2019) Sugar metabolism as input signals and fuel for leaf senescence. Genes Genomics, 41:737-746.
∙ Jae Il Lyu, Jin Hee Kim, Hyosub Chu, Mark A. Taylor, Sukjoon Jung, Seung Hee Baek, Hye Ryun Woo, Pyung Ok Lim#, Jeongsik Kim# (2019) Natural allelic variation of GVS1 confers diversity in the regulation of leaf senescence in Arabidopsis. New Phytol., 221(4): 2320-2334.
∙ Jin Hee Kim*, Jeongsik Kim*, Sang Eun Jun*, Sanghoon Park, Rupak Timilsina, Da Som Kwon, Yongmin Kim, Sung-Jin Park, Ji Young Hwang, Hong Gil Nam, Gyung-Tae Kim#, Hye Ryun Woo# (2018) ORESARA15, a PLATZ transcription factor, mediates leaf growth and senescence in Arabidopsis. New Phytol., 220(2): 609-623.
∙ Inhye Lee*, Kuglae Kim*, Sumin Lee, Seungjun Lee, Eunjin Hwang, Kihye Shin, Dayoung Kim, Jungki Choi, Hyunmo Choi, Jeong Seok Cha, Hoyoung Kim, Rin-A Lee, Suyeong Jeong, Jeongsik Kim, Yumi Kim, Hong Gil Nam, Soon-Ki Park, Hyun-Soo Cho#, Moon-Soo Soh# (2018) Functional analysis of a missense allele of KARRIKIN-INSENSITIVE2 that impairs ligand-binding and downstream signaling in Arabidopsis thaliana. J Exp Bot., 69(15): 3609–3623.
∙ Hyo Jung Kim*, Ji-Hwan Park*, Jingil Kim, Jung Ju Kim, Sunghyun Hong, Jeongsik Kim, Jin Hee Kim, Hye Ryun Woo, Changbong Hyeon, Pyung Ok Lim#, Hong Gil Nam#, Daehee Hwang# (2018) Time-evolving NAC genetic networks reveal a NAC troika that is critical for regulation of leaf aging in Arabidopsis. Proc Natl Acad Sci U S A., 115(21):E4930-E4939
∙ Jeongsik Kim*, Su Jin Park*, Il Hwan Lee, Hyosub Chu, Christopher A. Penfold, Jin Hee Kim, Vicky Buchanan-Wollaston, Hong Gil Nam, Hye Ryun Woo#, Pyung Ok Lim# (2018) Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence. J Exp Bot., 69(12):3023-36.
∙ Jeongsik Kim*, Jin Hee Kim*, Jae Il Lyu, Hye Ryun Woo, and Pyung Ok Lim# (2018) New insights into the regulation of leaf senescence in Arabidopsis. J Exp Bot., 69(4):787-99
∙ Jeongsik Kim and David E. Somers (2017) An HSP90 co-chaperone controls circadian proteostasis. Cell Cycle, 16(16):1483-4
∙ Deepa Khare, Hyunju Choi, Sung Un Huh, Barbara Bassin, Jeongsik Kim, Enrico Martinoia, Kee Hoon Sohn, Kyung-Hee Paek#, and Youngsook Lee# (2017) Arabidopsis ABCG34 contributes to defense against necrotrophic pathogens by mediating the secretion of camalexin. Proc Natl Acad Sci U S A. 108(40):16843-8
∙ Zhuoyun Wei, Tong Yuan, Danuše Tarkowská, Jeongsik Kim, Hong Gil Nam, Ondřej Novák, Kai He, Xiaoping Gou, and Jia Li (2017) Brassinosteroid biosynthesis is modulated via a transcription factor cascade of COG1, PIF4 and PIF5. Plant Physiol, 174(2):1260-1273
∙ Joon-Yung Cha*, Jeongsik Kim*, Tae-Sung Kim, Qingning Zeng, Lei Wang, Sang Yeol Lee, Woe-Yeon Kim# and David E. Somers# (2017) GIGANTEA is a co-chaperone which facilitates maturation of ZEITLUPE in the Arabidopsis circadian clock. Nature Commun, 8(1):3 DOI: 10.1038/s41467-016-0014-9 (Faculty of 1000 evaluation)
∙ Jae Il Lyu*, Seung Hee Baek*, Sukjoon Jung, Hyosub Chu, Hong Gil Nam, Jeongsik Kim# and Pyung Ok Lim# (2017) High-throughput and computational study of leaf senescence through a phenomic approach. Front Plant Sci, 8:250, doi: 10.3389/fpls.2017.00250
∙ Jeongsik Kim, Hye Ryun Woo, and Hong Gil Nam (2016) Toward systems understanding of leaf senescence: an integrated multi-omics perspective on leaf senescence research, Mol Plant, 9(6):813-25
∙ Hye Ryun Woo*,#, Hee Jung Koo*, Jeongsik Kim*, Hyobin Jeong*, Jin Ok Yang, Il Hwan Lee, Ji Hyung Jun, Seung Hee Choi, Su Jin Park, Byeongsoo Kang, You Wang Kim, Bong-Kwan Phee, Jin Hee Kim, Chaehwa Seo, Charny Park, Sang Cheol Kim, Seongjin Park, Byungwook Lee, Sanghyuk Lee, Daehee Hwang#, Hong Gil Nam#, and Pyung Ok Lim# (2016) Programming of plant leaf senescence with temporal and inter-organellar coordination of transcriptome in Arabidopsis. Plant Physiol, 171(1):452-67 (Faculty of 1000 evaluation)
∙ Il Hwan Lee, In Chul Lee, Jeongsik Kim, Jin Hee Kim, Eui-Hwan Chung, Hyo Jung Kim, Su Jin Park, Yong Min Kim, Sin Kyu Kang, Hong Gil Nam#, Hye Ryun Woo# and Pyung Ok Lim# (2016) NORE1/SAUL1 integrates temperature dependent defense programs involving SGT1b and PAD4 pathways and leaf senescence in Arabidopsis. Physiol Plant, 158:180-199, doi: 10.1111/ppl.12434
∙ Jeongsik Kim, Jin Hee Kim, Eric J. Richards, Kyung Min Chung#, and Hye Ryun Woo# (2014) Arabidopsis VIM proteins regulate epigenetic silencing by modulating DNA methylation and histone modification in cooperation with MET1. Mol Plant, 7(9), 1470–1485
∙ Jeongsik Kim, Ruishuang Geng, Richard A. Gallenstein, and David E. Somers (2013) The F-box protein ZEITLUPE controls stability and nucleocytoplasmic partitioning of GIGANTEA. Development, 140(19), 4060-4069.
∙ Yumi Kim, Junhyun Lim, Miji Yeom, Hyunmin Kim, Jeongsik Kim, Lei Wang, Woe Yeon Kim, David E. Somers, and Hong Gil Nam (2013) ELF4 regulates GIGANTEA chromatin access through subnuclear sequestration. Cell Rep, 3(3): 671–7 (Faculty of 1000 evaluation).
∙ Lei Wang, Jeongsik Kim, David E. Somers (2013) Transcriptional corepressor TOPLESS complexes with pseudoresponse regulator proteins and histone deacetylases to regulate circadian transcription. Proc Natl Acad Sci U S A, 110(2):761-6 (Faculty of 1000 evaluation).
∙ Tae-sung Kim*, Woe Yeon Kim*, Sumire Fujiwara, Jeongsik Kim, Joon-Yung Cha, Jin Ho Park, Sang Yeol Lee, and David E. Somers (2011) HSP90 functions in the circadian clock through stabilization of the client F-box protein ZEITLUPE. Proc Natl Acad Sci U S A, 108(40):16843-8 (Faculty of 1000 evaluation).
∙ Jeongsik Kim and David E. Somers (2010) Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis thaliana mesophyll protoplasts. Plant Physiol, 154(2):611-21 (Faculty of 1000 evaluation).
∙ Hye Ryun Woo, Jin Hee Kim, Junyoung Kim, Jeongsik Kim, Ung Lee, In-Ja Song, Jin-Hong Kim, Hyo-Yeon Lee, Hong Gil Nam, and Pyung Ok Lim (2010) The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis, J Exp Bot, 61(14): 3947-57
Jeongsik Kim and Hong Gil Nam (2009) Instrumentation and software for analysis of Arabidopsis circadian leaf movement. IBC, 1, no. 1, article no. 5, pp. 1-16 | doi: 10.4051/ibc.2009.1.0005
∙ Jin Hee Kim*, Hye Ryun Woo*, Jeongsik Kim, Pyung Ok Lim, In Chul Lee, Seung Hee Choi, Daehee Hwang and Hong Gil Nam (2009) Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science, 323(5917): 1053-1057 (Faculty of 1000 evaluation).
∙ Jeongsik Kim, Yumi Kim, Miji Yeom, Jin-Hee Kim, and Hong Gil Nam (2008). FIONA1 is essential for regulating period length in the Arabidopsis circadian clock. Plant Cell, 20(2): 307-319.
∙ Woe-Yeon Kim*, Sumire Fujiwara*, Sung-Suk Suh, Jeongsik Kim, Yumi Kim, Linqu Han, Karine David, Joanna Putterill, Hong Gil Nam and David E. Somers (2007). ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light. Nature, 449(7160): 356-360 (Faculty of 1000 evaluation).
∙ Jachoon Koo, Yumi Kim, Jeongsik Kim, Miji Yeom, In Chul Lee and Hong Gil Nam (2007). A GUS/Luciferase fusion reporter for plant gene trapping and for assay of promoter activity with luciferin-dependent control of the reporter protein stability. Plant Cell Physiol, 48(8): 1121-1131.
∙ Don Ha Park*, Pyung Ok Lim*, Jeongsik Kim, Dae Shik Cho, Sung Hyun Hong and Hong Gil Nam (2003). The Arabidopsis COG1 gene encodes a DOF domain transcription factor and negatively regulates phytochrome signaling. Plant J, 34: 161-171.
교육학 논문
PATENTS
1. Hong Gil Nam, Kyung Mok Park, Dong Hee Lee, Jeongsik Kim, Pyung Ok Lim (2012) “Polypeptide Having a Function of Delaying Flowering or Suppressing Growth, Polynucleotide Encoding the Polypeptide and Uses Thereof”, KR101144094B1.
2. Hong Gil Nam, Dong Hee Lee, Jeongsik Kim, and Pyung Ok Lim (2010). “POLYPEPTIDE HAVING FUNCTION FOR DELAYING ANTHESIS OR SUPPRESSING GROWTH, POLYNUCLEOTIDE ENCODING THE SAME, AND USE THEREOF” All of the member PCT countries, PCT/KR2010/001112.
3. Hong Gil Nam, Jeongsik Kim, Donha Park, and Pyung Ok Lim (2005). “Flowering time-controlling gene COG2 isolated from Arabidopsis thaliana" All of the member PCT countries, PCT/KR2005/000910.
INVITED SEMINARS
1. Jae Il Lyu, Hyosub Chu, Jin Hee Kim, Seung Hee Baek, Suk joon Jung, Hye Ryun Woo, Hong Gil Nam, Pyung Ok Lim, Jeongsik Kim (Dec 22, 2016), Allelic variation of GVS1 confers diversity in the regulation of senescence among Arabidopsis accessions. Signaling in Plant Development and Stress Responses Workshop, DGIST, Daegu, Korea
2. Jeongsik Kim and David Somers (Jun 19, 2013), Rapid assessment of gene function in the circadian clock using artificial microRNA in Arabidopsis thaliana mesophyll protoplasts, Gyeongsang National University, Jinju, Korea
INVITED TALK IN CONFERENCE/SYMPOSIUM/TRAINING
1. Jae Il Lyu, Hyosub Chu, Jin Hee Kim, Seung Hee Baek, Suk joon Jung, Hye Ryun Woo, Hong Gil Nam, Pyung Ok Lim, Jeongsik Kim (Feb 2, 2018), Natural allelic variation of GVS1 confers diversity in the regulation of leaf senescence in Arabidopsis, 2018 KSPB Winter Conference, Gwangju, Korea
2. Jae Il Lyu, Hyosub Chu, Jin-Hee Kim, Seung Hee Baek, Suk joon Jung, Hye Ryun Woo, Hong Gil Nam, Pyung Ok Lim, and Jeongsik Kim (June 29, 2016), Allelic variation of GVS1 confers diversity in the regulation of senescence among Arabidopsis accessions, International conference on Arabidopsis research, Gyeongju, Korea - Selected poster talk
3. Jeongsik Kim, Ruishuang Geng, Richard Gallenstein, and David Somers (July 20-July 24, 2012). Functional dissection of ZTL protein motifs: the LOV domain in the regulation of the circadian clock and plant development. Plant Biology 2012, Austin, TX, USA - Minisymposium talk