(* indicates the corresponding author.)
6. Yinqiao Yan*, Hao Wu* (2026). BayesRare: A Bayesian mixture model for population-level rare cell type detection in multi-subject single-cell RNA sequencing data. Briefings in Bioinformatics, 27(1), bbag024.
5. Yinqiao Yan, Xiangnan Feng, Xiangyu Luo* (2025). Spatially aware adjusted Rand index for evaluating spatial transcriptomics clustering. Biometrics, 81(3): ujaf127. [paper; GitHub link spARI; Bioconductor link spARI]
4. Yinqiao Yan, Xiangyu Luo* (2025). BACT: nonparametric Bayesian cell typing for single-cell spatial transcriptomics data. Briefings in Bioinformatics, 26(1): bbae689. [paper; R package BACT; code and data used in paper]
3. Yinqiao Yan, Xiangyu Luo* (2024). Bayesian integrative region segmentation in spatially resolved transcriptomic studies. Journal of the American Statistical Association, 119(547): 1709-1721. [paper; R package BINRES]
2. Yinqiao Yan, Xiangyu Luo* (2023). Bayesian tree-structured two-level clustering for nested data analysis. Journal of Computational and Graphical Statistics, 32(3): 1185-1194. [paper; code and data used in paper]
1. Yinqiao Yan, Qingna Li* (2020). An efficient augmented Lagrangian method for support vector machine. Optimization Methods and Software, 35(4): 855-883. [paper; code and data used in paper]