2024
Detection and Comparative Analysis of Immunoglobulin Genes in Vertebrate Genomes. Conference talk. Plan and Animal Genomes 2024. San Diego, USA.
Comparative analysis of adaptive immune systems in agriculturally important species. USDA Translational Omics Working Group Seminar Series.
Comparative studies of mammalian immunoglobulin loci. Invited talk. NCI Spring School on Algorithmic Cancer Biology.
Comparative immunogenomics analysis of mustelid species revealed possible associations with susceptibility and immunity to the sylvatic plague. Conference talk. Black-footed Ferret Genomics Annual Workgroup Meeting 2024, San Diego Zoo Wildlife Alliance. Escondido, USA.
2023
Comparative studies of mammalian immunoglobulin loci. A joint seminar by the Vertebrate Genome Project and the Ruminant T2T Consortium.
Comparative studies of adaptive immune loci of great apes. Primate T2T Consortium Seminar Series.
Open problems in computational immunogenomics. Invited talk. Penn State University. State College, USA.
Profiling of antibody repertoires and immunoglobulin loci enables large-scale analysis of adaptive immune responses. CBCB Seminar Series, University of Maryland. College Park, USA.
Mammalian immunome project. Invited talk. Ruminant T2T Workshop. Clay Center, USA.
Profiling of antibody repertoires and immunoglobulin loci enables large-scale analysis of adaptive immune responses. Keynote talk. VIB conference “Revolutionizing Next-Generation Sequencing” 2023. Gent, Belgium.
2022
Comparative study of humoral immunity in ruminants. Invited talk at the Telomere-to-Telomere "Face-to-Face" (T2T-F2F) conference. Santa Cruz, USA [slides]
Profiling of antibody repertoires and immunoglobulin loci enables large-scale analysis of adaptive immune responses. Invited talk at the workshop "Computational Challenges in Very Large-Scale Omics". The Simons Institute for the Theory of Computing, UC Berkeley. Berkeley, USA [slides].
Revealing how variations in cattle antibody repertoires correlate with responses to bovine respiratory disease vaccine. Abstract talk at AGBT-Agriculture. San Diego, USA [slides]
Profiling of antibody repertoires and immunoglobulin loci enables large-scale analysis of adaptive immune responses. CDSL Seminar Series. National Cancer Institute. Washington, USA [slides]
2021
Profiling of antibody repertoires and immunoglobulin loci enables large-scale analysis of adaptive immune responses. Quantitative Sciences Seminar Series. Johns Hopkins University. Baltimore, USA.
High-throughput profiling of antibody repertoires enables large-scale analysis of adaptive immune responses. Norwegian Society for Immunology Rising Stars in Immunology Seminar Series. Oslo, Norway.
Analyzing adaptive immune responses using antibody repertoire sequencing data. Invited talk at Summer Bioinformatics School. Saint Petersburg, Russia.
Mechanisms of formation and role of tandem D-D fusions in antibody repertoires. Invited talk at 10x Genomics. Pleasanton, USA.
High-throughput profiling of antibody repertoires enables large-scale analysis of adaptive immune responses. Invited talk at EMBL's European Bionformatics Institute. Cambridge, UK.
High-throughput profiling of antibody repertoires enables large-scale analysis of adaptive immune responses. Invited talk at the Bioinformatics Seminar Series, ITMO University. Saint Petersburg, Russia.
Open problems in computational immunogenomics. Carnegie Mellon University, Pittsburgh, USA.
Open problems in computational immunogenomics. Simon Fraser University, Vancouver, Canada.
Open problems in computational immunogenomics. University of Southern California, Los Angeles, USA.
Open problems in computational immunogenomics. Johns Hopkins University, Baltimore, USA.
2020
Bioinformatics approaches to analyzing adaptive immune systems through profiling of antibody repertoires. Invited talk at Zai Lab. San Francisco, USA [slides].
Mechanisms of formation and role of tandem D-D fusions in antibody repertoires. Department talk at the University of Louisville, Louisville, USA [slides].
Computer Science meets Immunology: how computational analyses help to study diseases. Invited talk at the Computer Science Club. Saint Petersburg, Russia [slides]
Analyzing adaptive immune system through deep interrogation of antibody repertoires using immunosequencing data. Conference talk at the Genome Informatics 2020, virtual [slides]
Large-scale analysis of Rep-Seq data reveals QTLs of antibody repertoires. Department talk at the University of Louisville, Louisville, USA [slides]
Large-scale analysis of Rep-Seq data reveals QTLs of antibody repertoires. Invited talk at the Bioinformatics Institute. Saint Petersburg, Russia [slides]
Large-scale analysis of Rep-Seq data reveals QTLs of antibody repertoires. Department talk at the Bioinformatics Seminar Series, UCSD. San Diego, USA [slides]
Finding population signatures of cattle antibody repertoires. Invited talk at the Information Theory and Applications Workshop 2020. San Diego, USA [slides]
Bioinformatics Approaches For Analyzing Adaptive Immune Systems Through Profiling of Antibody Repertoires With Immunosequencing Data. Invited talk at the Peptalk Antibody 2020. San Diego, USA [slides]
Analyzing population signatures of cattle antibody repertoires. Invited talk at Plant and Animal Genome 2020, Cattle / swine workshop. San Diego, USA [slides]
2019
Detection of genomic variants in human immunoglobulin loci and analysis of their impact on the adaptive immune response. Conference talk at the Immune Polymorphism and Population Dynamics Workshop 2019. New Orleans, USA [slides]
Clonal analysis of antibody repertoires. Department talk at the Bioinformatics Seminar Series, UCSD. San Diego, USA [slides]
Open problems of computational immunology. Campus talk at the Models, Algorithms, and Data Science Seminar Series, UCSD. San Diego, USA [slides]
2018
Bioinformatics in immunology. Invited talk at the Bioinformatics Institute. Saint Petersburg, Russia [slides]
De novo inference of D genes and analysis of tandem CDR3 regions formed by non-canonical V(DD)J recombination events. Department talk at the Bioinformatics Seminar Series, UCSD. San Diego, USA [slides]
Open problems of computational immunology. Invited talk at the Information Theory and Applications Workshop 2018. San Diego, USA [slides]
Immunoinformatics: immunology meets computing. Invited talk at the Bioinformatics Institute. Saint Petersburg, Russia [slides]
2017
Open problems of computational immunogenomics. Invited talk at the Science Seminar Series, University of La Verne. Los Angeles, USA [slides]
Advanced immunoinformatics methods as supportive tools in antibody drug and vaccine design. Conference talk at the Immunogenomics 2017. Huntsville, USA [slides]
Immunoinformatics: immunology meets computing. Invited talk at the La Jolla Institute for Immunology. San Diego, USA [slides]
Immunoinformatics: immunology meets computing. Campus talk at the Information Theory and Applications Seminar Series, UCSD. San Diego, USA [slides]
2016
A novel toolkit for analysis of antibody repertoires using Rep-seq data. Conference talk at the RepSeq 2016. The Hague, Netherlands [slides]
Immunology and immunoinformatics. Invited talk at the Summer Bioinformatics School 2016. Saint Petersburg, Russia [slides]
Big Data challenges in analysis of adaptive immune repertoires. Invited talk at the Bioinformatics Seminar Series, UCSD. San Diego, USA [slides]
New bioinformatics challenges in analysis of adaptive immune repertoires. Invited talk at the Genentech. San Francisco, USA [slides]
2015
Introduction to immunoinformatics. Invited talk at the Bioinformatics Institute. Saint Petersburg, Russia [slides]
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Conference talk at the ISMB/ECCB 2015. Dublin, USA [slides]
2014
DipSPAdes: assembler for highly polymorphic diploid genomes. Conference talk at the RECOMB 2014. Pittsburgh, USA [slides]