Publications (Google Scholar Citation)
Peer-reviewed papers｜査読あり論文
Submitted/in prep.
63. Uecker H et al. (in prep.)
62. Apel P et al. (in prep.)
61. Iwashita G et al. (in prep.)
60. Shibasaki S et al. (in prep.)
59. van Velzen E et al. (in prep.)
58. Kuo H-T et al. (in prep.)
57. Toju H* et al. (submitted)
56. Suzuki K et al. (in revision)
55. Yamamichi M* (in revision)
54. Yamamichi M* (in revision)
53. Shibasaki S*, Yamamichi M (under review) Applying invasion criterion to cultural evolution. bioRxiv DOI: 10.1101/2025.11.12.688139
52. Shibasaki S, Yamamichi M* (submitted) Quantifying a trait-mediated indirect effect of an environmental stressor on population dynamics. bioRxiv DOI: 10.1101/2025.09.04.674171
51. Shibasaki S, Yamamichi M* (submitted) The double-edged effect of environmental fluctuations on evolutionary rescue. bioRxiv DOI: 10.1101/2024.08.09.607399
2025
50. Uematsu J, Yamamichi M, Tsuji K* (2025) Measuring competition coefficients in an ant community: Implications for intraspecific adaptation load.
Ecology 106(12): e70274 DOI: 10.1002/ecy.70274
49. Kitano J*, Kagawa K, Tsuchimatsu T, Yamaguchi R, Yamamichi M (2025) The genomics of discrete polymorphisms maintained by disruptive selection.
Trends in Ecology & Evolution 40(10): 1023-1034 DOI: 10.1016/j.tree.2025.08.003
48. Gómez-Llano M*†, Yamamichi M†, Siepielski AM (2025) Sexual conflict in resident species can facilitate establishment of a maladapted invader.
The American Naturalist 206(3): 272-284 DOI: 10.1086/736568
47. Kawaguchi YW, Yamamichi M* (2025) A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors.
Journal of Evolutionary Biology 38(6): 778-785 DOI: 10.1093/jeb/voaf041 (bioRxiv DOI: 10.1101/2024.04.26.589870)
2024
46. Morita K, Yamamichi M* (2024) Character displacement or priority effects: immigration timing can affect community assembly with rapid evolution.
Proceedings of the Royal Society B: Biological Sciences 291(2035): 20242145 DOI: 10.1098/rspb.2024.2145
45. Ito H*, Yamamichi M* (2024) A complete classification of evolutionary games with environmental feedback.
PNAS Nexus 3(11): pgae455 DOI: 10.1093/pnasnexus/pgae455
44. Letten AD*, Yamamichi M, Richardson JA, Ke P-J* (2024) Microbial dormancy supports multi-species coexistence under resource fluctuations.
Ecology Letters 27(9): e14507 DOI: 10.1111/ele.14507
43. Arenas-Castro H*, Berdejo-Espinola V, Chowdhury S, Rodríguez-Contreras A, James ARM, Raja NB, Dunne EM, Bertolino S, Emidio NB, Derez CM, Drobniak SM, Fulton GR, Henao-Diaz LF, Kaur A, Kim CJS, Lagisz M, Medina I, Mikula P, Narayan VP, O'Bryan CJ, Oh RRY, Ovsyanikova E, Pérez-Hämmerle K-V, Pottier P, Powers JS, Rodriguez-Acevedo AJ, Rozak AH, Sena PHA, Sockhill NJ, Tedesco AM, Tiapa-Blanco F, Tsai J-S, Villarreal-Rosas J, Wadgymar SM, Yamamichi M, Amano T (2024) Academic publishing requires linguistically inclusive policies.
Proceedings of the Royal Society B: Biological Sciences 291(2018): 20232840 DOI: 10.1098/rspb.2023.2840 (EcoEvoRxiv DOI: 10.32942/X2NS3K)
42. Otake Y*, Yamamichi M, Hirata Y, Odagiri H, Yoshida T (2024) Different photoperiodic responses in diapause induction can promote the maintenance of genetic diversity via the storage effect in Daphnia pulex.
Proceedings of the Royal Society B: Biological Sciences 291(2016): 20231860 DOI: 10.1098/rspb.2023.1860
2023
41. Fujita H*, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H* (2023) Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics.
Frontiers in Microbiology 14: 1261137 DOI: 10.3389/fmicb.2023.1261137 (bioRxiv DOI: 10.1101/2023.01.17.524457)
40. Yamamichi M*, Letten AD, Schreiber SJ (2023) Eco-evolutionary maintenance of diversity in fluctuating environments.
Ecology Letters 26(S1): S152-S167 DOI: 10.1111/ele.14286
Special issue: Exploring the border between ecology and evolution
39. Yamamichi M*, Ellner SP, Hairston NG Jr (2023) Beyond simple adaptation: Incorporating other evolutionary processes and concepts into eco-evolutionary dynamics.
Ecology Letters 26(S1): S16-S21 DOI: 10.1111/ele.14197 (Authorea DOI: 10.22541/au.166438574.48839383/v1)
Special issue: Exploring the border between ecology and evolution
38. Morita K, Yamamichi M* (2023) How does the magnitude of genetic variation affect ecological and reproductive character displacement?
Population Ecology 65(4): 220-230 DOI: 10.1002/1438-390X.12097 (bioRxiv DOI: 10.1101/2021.02.26.432976)
Special feature: Sex and biological communities
37. Yamamichi M*, Tsuji K, Sakai S, Svensson EI (2023) Frequency-dependent community dynamics driven by sexual interactions.
Population Ecology 65(4): 204-219 DOI: 10.1002/1438-390X.12165
Special feature: Sex and biological communities
36. Nakazawa T*, Katayama N, Utsumi S, Yamawo A, Yamamichi M (2023) When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism.
Frontiers in Ecology and Evolution 11: 1138138 DOI: 10.3389/fevo.2023.1138138
35. Fujita H*, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H* (2023) Facilitative interaction networks in experimental microbial community dynamics.
Frontiers in Microbiology 14: 1153952 DOI: 10.3389/fmicb.2023.1153952 (bioRxiv DOI: 10.1101/2023.01.19.524804)
34. Fujita H*, Ushio M, Suzuki K, Abe MS, Yamamichi M, Iwayama K, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H* (2023) Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics.
Microbiome 11: 63 DOI: 10.1186/s40168-023-01474-5 (bioRxiv DOI: 10.1101/2022.08.23.505041)
2022
33. Yamamichi M*, Letten AD (2022) Extending the gleaner–opportunist trade-off.
Journal of Animal Ecology 91(11): 2163-2170 DOI: 10.1111/1365-2656.13813
32. Hirama F, Urabe J*, Doi H, Kazama T, Noguchi T, Tappenbeck TH, Katano I, Yamamichi M, Yoshida T, Elser JJ (2022) Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain.
Frontiers in Ecology and Evolution 10: 956819 DOI: 10.3389/fevo.2022.956819
31. Yamamichi M*, Gibbs T, Levine JM (2022) Integrating eco-evolutionary dynamics and modern coexistence theory.
Ecology Letters 25(10): 2091-2106 DOI: 10.1111/ele.14078
30. Yamamichi M* (2022) How does genetic architecture affect eco-evolutionary dynamics? A theoretical perspective.
Philosophical Transactions of the Royal Society B: Biological Sciences 377(1855): 20200504 DOI: 10.1098/rstb.2020.0504
Theme issue: Genetic basis of adaptation and speciation: from loci to causative mutations
29. Kasada M*, Yamamichi M (2022) Idea paper: Controlling trait adaptation to decrease population densities for conservation and management.
Ecological Research 37(4): 475-480 DOI: 10.1111/1440-1703.12300
Special feature: Promoting idea sharing via Idea Paper 2
2021
28. Yamamichi M*, Letten AD (2021) Rapid evolution promotes fluctuation-dependent species coexistence.
Ecology Letters 24(4): 812-818 DOI: 10.1111/ele.13707 (bioRxiv DOI: 10.1101/2020.08.05.239053)
27. Letten AD*, Yamamichi M (2021) Gleaning, fast and slow: In defense of a canonical ecological trade-off.
Proceedings of the National Academy of Sciences of the United States of America 118(5): e2022754118 DOI: 10.1073/pnas.2022754118
26. Kazama T, Urabe J*, Yamamichi M, Tokita K, Yin X, Katano I, Doi H, Yoshida T, Hairston NG Jr (2021) A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors.
Communications Biology 4: 49 DOI: 10.1038/s42003-020-01587-9 (Authorea DOI: 10.22541/au.159121368.85843146)
2020
25. Yamamichi M*, Kyogoku D, Iritani R, Kobayashi K, Takahashi Y, Tsurui-Sato K, Yamawo A, Dobata S, Tsuji K, Kondoh M* (2020) Intraspecific adaptation load: a mechanism for species coexistence.
Trends in Ecology & Evolution 35(10): 897-907 DOI: 10.1016/j.tree.2020.05.011
24. Yamamichi M*, Koizumi I (2020) Toxic males: Density-dependent male mating harassment can explain geographic parthenogenesis.
Ecological Research 35(2): 281-288 DOI: 10.1111/1440-1703.12097
Award Paper
2019
23. Yamamichi M*, Lyberger K, Patel S (2019) Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions.
Population Ecology 61(4): 362-370 DOI: 10.1002/1438-390X.12022 (bioRxiv DOI: 10.1101/509885)
Award Paper
22. Cortez MH*, Yamamichi M (2019) How (co)evolution alters predator responses to increased mortality: extinction thresholds and hydra effects.
Ecology 100(10): e02789 DOI: 10.1002/ecy.2789
21. Schreiber SJ*, Yamamichi M, Strauss SY (2019) When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity.
Ecology 100(7): e02664 DOI: 10.1002/ecy.2664 (bioRxiv DOI: 10.1101/161919)
20. Yamamichi M*, Hairston NG Jr, Rees M, Ellner SP (2019) Rapid evolution with generation overlap: the double-edged effect of dormancy.
Theoretical Ecology 12(2): 179-195 DOI: 10.1007/s12080-019-0414-7
Special issue to honor Alan Hastings’ 65th birthday
19. Yamamichi M*, Klauschies T, Miner BE, van Velzen E (2019) Modelling inducible defences in predator–prey interactions: assumptions and dynamical consequences of three distinct approaches.
Ecology Letters 22(2): 390-404 DOI: 10.1111/ele.13183
2018
18. Yamamichi M*, Kazama T, Tokita K, Katano I, Doi H, Yoshida T, Hairston NG Jr, Urabe J (2018) A shady phytoplankton paradox: when phytoplankton increases under low light.
Proceedings of the Royal Society B: Biological Sciences 285(1882): 20181067 DOI: 10.1098/rspb.2018.1067
17. Toju H*, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET (2018) Core microbiomes for sustainable agroecosystems.
Nature Plants 4(5): 247-257 DOI: 10.1038/s41477-018-0139-4
2017
16. Toju H*, Yamamichi M, Guimarães PR Jr, Olesen JM, Mougi A, Yoshida T, Thompson JN (2017) Species-rich networks and eco-evolutionary synthesis at the metacommunity level.
Nature Ecology & Evolution 1(2): 0024 DOI: 10.1038/s41559-016-0024
15. Yamamichi M*, Hoso M (2017) Roles of maternal effects in maintaining genetic variation: Maternal storage effect.
Evolution 71(2): 449-457 DOI: 10.1111/evo.13118
14. Adachi T*, Costa DP, Robinson PW, Peterson SH, Yamamichi M, Naito Y, Takahashi A (2017) Searching for prey in a three-dimensional environment: hierarchical movements enhance foraging success in northern elephant seals.
Functional Ecology 31(2): 361-369 DOI: 10.1111/1365-2435.12686
2016
13. Yamamichi M*, Ellner SP (2016) Antagonistic coevolution between quantitative and Mendelian traits.
Proceedings of the Royal Society B: Biological Sciences 283(1827): 20152926 DOI: 10.1098/rspb.2015.2926
12. Yen JDL*, Cabral RB, Cantor M, Hatton I, Kortsch S, Patrício J, Yamamichi M (2016) Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures.
Journal of Animal Ecology 85(2): 537-547 DOI: 10.1111/1365-2656.12484
2015
11. Sato NJ, Tanaka KD*, Okahisa Y, Yamamichi M, Kuehn R, Gula R, Ueda K, Theuerkauf J (2015) Nestling polymorphism in a cuckoo-host system.
Current Biology 25(24): R1164-R1165 DOI: 10.1016/j.cub.2015.11.028
10. Yamamichi M*, Miner BE (2015) Indirect evolutionary rescue: prey adapts, predator avoids extinction.
Evolutionary Applications 8(8): 787-795 DOI: 10.1111/eva.12295
9. Yamamichi M*, Meunier CL, Peace A, Prater C, Rúa MA (2015) Rapid evolution of a consumer stoichiometric trait destabilizes consumer–producer dynamics.
Oikos 124(7): 960-969 DOI: 10.1111/oik.02388
Woodstoich III Article
2014
8. Kasada M*, Yamamichi M, Yoshida T (2014) Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator–prey system.
Proceedings of the National Academy of Sciences of the United States of America 111(45): 16035-16040 DOI: 10.1073/pnas.1406357111
7. Tezuka A, Kasagi S, van Oosterhout C, McMullan M, Iwasaki WM, Kasai D, Yamamichi M, Innan H, Kawamura S*, Kawata M* (2014) Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago.
Heredity 113(5): 381-389 DOI: 10.1038/hdy.2014.35
6. Yamamichi M*, Yoshida T, Sasaki A (2014) Timing and propagule size of invasion determine its success by a time-varying threshold of demographic regime shift.
Ecology 95(8): 2303-2315 DOI: 10.1890/13-1527.1
2013
5. Yamamichi M*, Sasaki A (2013) Single-gene speciation with pleiotropy: Effects of allele dominance, population size, and delayed inheritance.
Evolution 67(7): 2011-2023 DOI: 10.1111/evo.12068
2012
4. Yamamichi M, Innan H* (2012) Estimating the migration rate from genetic variation data.
Heredity 108(4): 362-363 DOI: 10.1038/hdy.2011.83
3. Yamamichi M, Gojobori J, Innan H* (2012) An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees.
Molecular Biology and Evolution 29(1): 145-156 DOI: 10.1093/molbev/msr172
2011
2. Yamamichi M*, Yoshida T, Sasaki A (2011) Comparing the effects of rapid evolution and phenotypic plasticity on predator-prey dynamics.
The American Naturalist 178(3): 287-304 DOI: 10.1086/661241
1. Matthews B*, Narwani A, Hausch S, Nonaka E, Peter H, Yamamichi M, Sullam KE, Bird KC, Thomas MK, Hanley TC, Turner CB (2011) Toward an integration of evolutionary biology and ecosystem science.
Ecology Letters 14(7): 690-701 DOI: 10.1111/j.1461-0248.2011.01627.x
