Publication (Google Scholar Citation)
Peer-reviewed papers|査読あり論文
Submitted/in prep.
51. Shibasaki, Yamamichi (in prep.)
50. Ichijo et al. (in prep.)
49. Ito, Yamamichi (in prep.)
48. Gómez-Llano et al. (in prep.)
47. Uematsu et al. (submitted)
46. Letten et al. (in revision)
45. Morita, Yamamichi (in revision)
44. Kawaguchi YW, Yamamichi M (in prep.) A single episode of sexual reproduction can prevent population extinction under multiple stressors. bioRxiv DOI: 10.1101/2024.04.26.589870
2024
43. Arenas-Castro H, Berdejo-Espinola V, Chowdhury S, Rodríguez-Contreras A, James A, Raja NB, Dunne EM, Bertolino S, Emidio NB, Derez CM, Drobniak SM, Fulton GR, Henao-Diaz LF, Kaur A, Kim CJS, Lagisz M, Medina I, Mikula P, Narayan VP, O'Bryan CJ, Oh RRY, Ovsyanikova E, Pérez-Hämmerle K-V, Pottier P, Powers JS, Rodriguez-Acevedo AJ, Rozak AH, Sena PHA, Sockhill NJ, Tedesco AM, Tiapa-Blanco F, Tsai J-S, Villarreal-Rosas J, Wadgymar SM, Yamamichi M, Amano T (2024) Academic publishing requires linguistically inclusive policies.
Proceedings of the Royal Society B: Biological Sciences 291(2018): 20232840 DOI: 10.1098/rspb.2023.2840 (EcoEvoRxiv DOI: 10.32942/X2NS3K)
42. Otake Y, Yamamichi M, Hirata Y, Odagiri H, Yoshida T (2024) Different photoperiodic responses in diapause induction can promote the maintenance of genetic diversity via the storage effect in Daphnia pulex.
Proceedings of the Royal Society B: Biological Sciences 291(2016): 20231860 DOI: 10.1098/rspb.2023.1860
2023
41. Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics.
Frontiers in Microbiology 14: 1153952 DOI: 10.3389/fmicb.2023.1261137 (bioRxiv DOI: 10.1101/2023.01.17.524457)
40. Yamamichi M, Letten AD, Schreiber SJ (2023) Eco-evolutionary maintenance of diversity in fluctuating environments.
Ecology Letters 26(S1): S152-S167 DOI: 10.1111/ele.14286
Special issue: Exploring the border between ecology and evolution
39. Yamamichi M, Ellner SP, Hairston NG Jr (2023) Beyond simple adaptation: Incorporating other evolutionary processes and concepts into eco-evolutionary dynamics.
Ecology Letters 26(S1): S16-S21 DOI: 10.1111/ele.14197 (Authorea DOI: 10.22541/au.166438574.48839383/v1)
Special issue: Exploring the border between ecology and evolution
38. Morita K, Yamamichi M (2023) How does the magnitude of genetic variation affect ecological and reproductive character displacement?
Population Ecology 65(4): 220-230 DOI: 10.1002/1438-390X.12097 (bioRxiv DOI: 10.1101/2021.02.26.432976)
Special feature: Sex and biological communities
37. Yamamichi M, Tsuji K, Sakai S, Svensson EI (2023) Frequency-dependent community dynamics driven by sexual interactions.
Population Ecology 65(4): 204-219 DOI: 10.1002/1438-390X.12165
Special feature: Sex and biological communities
36. Nakazawa T, Katayama N, Utsumi S, Yamawo A, Yamamichi M (2023) When to help juveniles, adults, or both: analyzing the evolutionary models of stage-structured mutualism.
Frontiers in Ecology and Evolution 11: 1138138 DOI: 10.3389/fevo.2023.1138138
35. Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Okazaki Y, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Facilitative interaction networks in experimental microbial community dynamics.
Frontiers in Microbiology 14: 1153952 DOI: 10.3389/fmicb.2023.1153952 (bioRxiv DOI: 10.1101/2023.01.19.524804)
34. Fujita H, Ushio M, Suzuki K, Abe MS, Yamamichi M, Iwayama K, Canarini A, Hayashi I, Fukushima K, Fukuda S, Kiers ET, Toju H (2023) Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics.
Microbiome 11: 63 DOI: 10.1186/s40168-023-01474-5 (bioRxiv DOI: 10.1101/2022.08.23.505041)
2022
33. Yamamichi M, Letten AD (2022) Extending the gleaner–opportunist trade-off.
Journal of Animal Ecology 91(11): 2163-2170 DOI: 10.1111/1365-2656.13813
32. Hirama F, Urabe J, Doi H, Kazama T, Noguchi T, Tappenbeck TH, Katano I, Yamamichi M, Yoshida T, Elser JJ (2022) Terrigenous subsidies in lakes support zooplankton production mainly via a green food chain and not the brown food chain.
Frontiers in Ecology and Evolution 10: 956819 DOI: 10.3389/fevo.2022.956819
31. Yamamichi M, Gibbs T, Levine JM (2022) Integrating eco-evolutionary dynamics and modern coexistence theory.
Ecology Letters 25(10): 2091-2106 DOI: 10.1111/ele.14078
30. Yamamichi M (2022) How does genetic architecture affect eco-evolutionary dynamics? A theoretical perspective.
Philosophical Transactions of the Royal Society B: Biological Sciences 377(1855): 20200504 DOI: 10.1098/rstb.2020.0504
Theme issue: Genetic basis of adaptation and speciation: from loci to causative mutations
29. Kasada M, Yamamichi M (2022) Idea paper: Controlling trait adaptation to decrease population densities for conservation and management.
Ecological Research 37(4): 475-480 DOI: 10.1111/1440-1703.12300
Special feature: Promoting idea sharing via Idea Paper 2
2021
28. Yamamichi M, Letten AD (2021) Rapid evolution promotes fluctuation-dependent species coexistence.
Ecology Letters 24(4): 812-818 DOI: 10.1111/ele.13707 (bioRxiv DOI: 10.1101/2020.08.05.239053)
27. Letten AD, Yamamichi M (2021) Gleaning, fast and slow: In defense of a canonical ecological trade-off.
Proceedings of the National Academy of Sciences of the United States of America 118(5): e2022754118 DOI: 10.1073/pnas.2022754118
26. Kazama T, Urabe J, Yamamichi M, Tokita K, Yin X, Katano I, Doi H, Yoshida T, Hairston NG Jr (2021) A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors.
Communications Biology 4: 49 DOI: 10.1038/s42003-020-01587-9 (Authorea DOI: 10.22541/au.159121368.85843146)
2020
25. Yamamichi M, Kyogoku D, Iritani R, Kobayashi K, Takahashi Y, Tsurui-Sato K, Yamawo A, Dobata S, Tsuji K, Kondoh M (2020) Intraspecific adaptation load: a mechanism for species coexistence.
Trends in Ecology & Evolution 35(10): 897-907 DOI: 10.1016/j.tree.2020.05.011
24. Yamamichi M, Koizumi I (2020) Toxic males: Density-dependent male mating harassment can explain geographic parthenogenesis.
Ecological Research 35(2): 281-288 DOI: 10.1111/1440-1703.12097
Award Paper
2019
23. Yamamichi M, Lyberger K, Patel S (2019) Antagonistic coevolution between multiple quantitative traits: Matching dynamics can arise from difference interactions.
Population Ecology 61(4): 362-370 DOI: 10.1002/1438-390X.12022 (bioRxiv DOI: 10.1101/509885)
Award Paper
22. Cortez MH, Yamamichi M (2019) How (co)evolution alters predator responses to increased mortality: extinction thresholds and hydra effects.
Ecology 100(10): e02789 DOI: 10.1002/ecy.2789
21. Schreiber SJ, Yamamichi M, Strauss SY (2019) When rarity has costs: coexistence under positive frequency-dependence and environmental stochasticity.
Ecology 100(7): e02664 DOI: 10.1002/ecy.2664 (bioRxiv DOI: 10.1101/161919)
20. Yamamichi M, Hairston NG Jr, Rees M, Ellner SP (2019) Rapid evolution with generation overlap: the double-edged effect of dormancy.
Theoretical Ecology 12(2): 179-195 DOI: 10.1007/s12080-019-0414-7
Special issue to honor Alan Hastings’ 65th birthday
19. Yamamichi M, Klauschies T, Miner BE, van Velzen E (2019) Modelling inducible defences in predator–prey interactions: assumptions and dynamical consequences of three distinct approaches.
Ecology Letters 22(2): 390-404 DOI: 10.1111/ele.13183
2018
18. Yamamichi M, Kazama T, Tokita K, Katano I, Doi H, Yoshida T, Hairston NG Jr, Urabe J (2018) A shady phytoplankton paradox: when phytoplankton increases under low light.
Proceedings of the Royal Society B: Biological Sciences 285(1882): 20181067 DOI: 10.1098/rspb.2018.1067
17. Toju H, Peay KG, Yamamichi M, Narisawa K, Hiruma K, Naito K, Fukuda S, Ushio M, Nakaoka S, Onoda Y, Yoshida K, Schlaeppi K, Bai Y, Sugiura R, Ichihashi Y, Minamisawa K, Kiers ET (2018) Core microbiomes for sustainable agroecosystems.
Nature Plants 4(5): 247-257 DOI: 10.1038/s41477-018-0139-4
2017
16. Toju H, Yamamichi M, Guimarães PR Jr, Olesen JM, Mougi A, Yoshida T, Thompson JN (2017) Species-rich networks and eco-evolutionary synthesis at the metacommunity level.
Nature Ecology & Evolution 1(2): 0024 DOI: 10.1038/s41559-016-0024
15. Yamamichi M, Hoso M (2017) Roles of maternal effects in maintaining genetic variation: Maternal storage effect.
Evolution 71(2): 449-457 DOI: 10.1111/evo.13118
14. Adachi T, Costa DP, Robinson PW, Peterson SH, Yamamichi M, Naito Y, Takahashi A (2017) Searching for prey in a three-dimensional environment: hierarchical movements enhance foraging success in northern elephant seals.
Functional Ecology 31(2): 361-369 DOI: 10.1111/1365-2435.12686
2016
13. Yamamichi M, Ellner SP (2016) Antagonistic coevolution between quantitative and Mendelian traits.
Proceedings of the Royal Society B: Biological Sciences 283(1827): 20152926 DOI: 10.1098/rspb.2015.2926
12. Yen JDL, Cabral RB, Cantor M, Hatton I, Kortsch S, Patrício J, Yamamichi M (2016) Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures.
Journal of Animal Ecology 85(2): 537-547 DOI: 10.1111/1365-2656.12484
2015
11. Sato NJ, Tanaka KD, Okahisa Y, Yamamichi M, Kuehn R, Gula R, Ueda K, Theuerkauf J (2015) Nestling polymorphism in a cuckoo-host system.
Current Biology 25(24): R1164-R1165 DOI: 10.1016/j.cub.2015.11.028
10. Yamamichi M, Miner BE (2015) Indirect evolutionary rescue: prey adapts, predator avoids extinction.
Evolutionary Applications 8(8): 787-795 DOI: 10.1111/eva.12295
9. Yamamichi M, Meunier CL, Peace A, Prater C, Rúa MA (2015) Rapid evolution of a consumer stoichiometric trait destabilizes consumer–producer dynamics.
Oikos 124(7): 960-969 DOI: 10.1111/oik.02388
Woodstoich III Article
2014
8. Kasada M, Yamamichi M, Yoshida T (2014) Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator–prey system.
Proceedings of the National Academy of Sciences of the United States of America 111(45): 16035-16040 DOI: 10.1073/pnas.1406357111
7. Tezuka A, Kasagi S, van Oosterhout C, McMullan M, Iwasaki WM, Kasai D, Yamamichi M, Innan H, Kawamura S, Kawata M (2014) Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago.
Heredity 113(5): 381-389 DOI: 10.1038/hdy.2014.35
6. Yamamichi M, Yoshida T, Sasaki A (2014) Timing and propagule size of invasion determine its success by a time-varying threshold of demographic regime shift.
Ecology 95(8): 2303-2315 DOI: 10.1890/13-1527.1
2013
5. Yamamichi M, Sasaki A (2013) Single-gene speciation with pleiotropy: Effects of allele dominance, population size, and delayed inheritance.
Evolution 67(7): 2011-2023 DOI: 10.1111/evo.12068
2012
4. Yamamichi M, Innan H (2012) Estimating the migration rate from genetic variation data.
Heredity 108(4): 362-363 DOI: 10.1038/hdy.2011.83
3. Yamamichi M, Gojobori J, Innan H (2012) An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees.
Molecular Biology and Evolution 29(1): 145-156 DOI: 10.1093/molbev/msr172
2011
2. Yamamichi M, Yoshida T, Sasaki A (2011) Comparing the effects of rapid evolution and phenotypic plasticity on predator-prey dynamics.
The American Naturalist 178(3): 287-304 DOI: 10.1086/661241
1. Matthews B, Narwani A, Hausch S, Nonaka E, Peter H, Yamamichi M, Sullam KE, Bird KC, Thomas MK, Hanley TC, Turner CB (2011) Toward an integration of evolutionary biology and ecosystem science.
Ecology Letters 14(7): 690-701 DOI: 10.1111/j.1461-0248.2011.01627.x
Book chapters|著書(分担執筆)
Hairston NG Jr, Fox JA, Yamamichi M (2024) Dormancy and Diapause. In: Scheiner SM (ed), Encyclopedia of Biodiversity 3rd edition, Vol. 6, 15-20. Elsevier Inc. DOI: 10.1016/B978-0-12-822562-2.00075-X
Yamamichi M (2022) Chapter 10: Single-gene speciation, balanced polymorphism, and antagonistic coevolution in left-right asymmetry of land snails. In: Hori M, Takahashi S (eds), Lateral Asymmetry in Animals: Predator-Prey Interactions, Dynamics, and Evolution: 275-295 (Ecological Research Monographs book series). Springer Nature Singapore Pte Ltd. DOI: 10.1007/978-981-19-1342-6_10
Yamamichi M (2020) Chapter 2: Effects of rapid evolution on population cycles and extinction in predator-prey systems. In: Mougi A (ed), Diversity of Functional Traits and Interactions: Perspectives on Community Dynamics: 19-49 (Theoretical Biology book series). Springer Nature Singapore Pte Ltd. DOI: 10.1007/978-981-15-7953-0_2
山道真人 (2019) 第12章「生態化学量論から読み解く進化と生態のフィードバック」. 遺伝子・多様性・循環の科学:生態学の領域融合へ(門脇浩明・立木佑弥編): 289-306, 京都大学学術出版会 ISBN: 978-4-8140-0190-3
山道真人 (2013) 「食うものー食われるものの関係」「補食」「捕食行動」「捕食者」. 行動生物学辞典(上田恵介ほか編), 東京化学同人 ISBN: 978-4-8079-0837-0
池田啓・山道真人 (2013) 「用語集」. 種生物学研究第36号 系統地理学:DNAで解き明かす生きものの自然史(池田啓・小泉逸郎編): 294-301, 文一総合出版 ISBN: 978-4-8299-6203-9
山道真人 (2013) 第9章「系統地理学における統計的推定の手法と今後の展望」・コラム9「NCPAにまつわる論争」. 種生物学研究第36号 系統地理学:DNAで解き明かす生きものの自然史(池田啓・小泉逸郎編): 261-293, 文一総合出版 ISBN: 978-4-8299-6203-9
Translation|翻訳
Mittelbach GG, McGill BJ (2023) ミッテルバッハ・マギル群集生態学 (門脇浩明・山道真人・内海俊介訳), 丸善出版 ISBN: 978-4-621-30797-7
Peer-reviewed papers in Japanese|査読あり和文
篠原直登・山道真人 (2021) 群集生態学における共存理論の現代的統合. 日本生態学会誌 71(2): 39-63 DOI: 10.18960/seitai.71.2_35
門脇浩明・山道真人・深野祐也・石塚航・三村真紀子・西廣淳・横溝裕行・内海俊介 (2020) 進化を考慮した保全生態学の確立と生態系管理に向けて. 保全生態学研究 25(2): 221-234 DOI: 10.18960/hozen.1933
山道真人・長谷川眞理子 (2012) 『保全生態学研究』の掲載論文に見られる研究対象の偏り. 保全生態学研究 17(2): 199-210 DOI: 10.18960/hozen.17.2_199
山道真人・角谷拓 (2009) マルコフ連鎖モンテカルロ(MCMC)法を用いたシミュレーションモデルのパラメータ推定:ベイジアンキャリブレーション入門. 日本生態学会誌 59(2): 207-216 DOI: 10.18960/seitai.59.2_207
Non-reviewed papers|査読なし英文・和文
山道真人 (2023) 個体群生態学会の来た道. 個体群生態学会会報 80: 20 [PDF]
山道真人 (2022) 海外で個体群生態学. 個体群生態学会会報 79: 18 [PDF]
山道真人 (2022) 迅速な進化が促進する振動依存の多種共存. オペレーションズ・リサーチ 67(1): 27-33 [PDF]
山道真人 (2020) 現象と数理モデルの双方向性がもたらす美しさ. academist Journal [URL]
山道真人 (2020) 進化か、絶滅か:間接進化的救助とヒドラ効果. 数理解析研究所講究録 2165: 54-58 [PDF]
山道真人 (2020) 研究奨励賞受賞記:生態と進化の接点を探して. 日本進化学会ニュース 21(1): 20-23 [PDF]
山道真人 (2018) <時に沿って>12年ぶりの駒場キャンパス. 教養学部報 601: 4 [HTML]
山道真人 (2018) カタツムリから考える種分化・多型の維持・共進化. 日本数理生物学会ニュースレター 85: 2-6 [PDF]
山道真人 (2017) 変動環境のもとで多様性を維持するストレージ効果. 日本数理生物学会ニュースレター 81: 18-19 [PDF]
鹿山大輔・板木好弘・山道真人 (2015) なぜ少数のメジャー漫画と多数のマイナー漫画があるのか? : 人気投票モデルをもちいた漫画の連載期間の分布予測. 数理解析研究所講究録 1966: 34-40 [PDF](優秀賞受賞)
山道真人 (2015) 数学と生命現象の連関性の探求 〜新しいモデリングの数理〜 参加報告記. 日本数理生物学会ニュースレター 77: 3 [PDF]
笠田実・山道真人・吉田丈人 (2015) 遺伝的多様性の新しい意義:生態と進化のフィードバックへの影響. 生物の科学 遺伝 69(3): 154-158
Yamamichi M (2015) Further evidence of why genetic diversity is important in ecology and evolution: Effects of a tradeoff form. The Hakubi Center Newsletter 10: 16 [PDF]
Yamamichi M (2015) When predators promote speciation: Theory of speciation processes promoted by biased predation. Kyoto University Research Activities 5(1): 30-31 [URL] [PDF]
山道真人 (2014) 生態と進化をめぐる冒険. 京都大学生態学研究センターニュース 125: 6 [PDF]
山道真人 (2014) エボ・グループセミナー in コーネル大学. 日本進化学会ニュース 15(2): 8-9 [PDF]
山道真人 (2013) イサカ滞在記. 日本数理生物学会ニュースレター 71: 8-11 [PDF]
山道真人 (2013) サマースクールから海外ポスドクへ. 日本生態学会関東地区会会報 61: 22-26 [PDF]
山道真人・印南秀樹 (2012) 始めよう!エコゲノミクス (7) 今後のエコゲノミクス研究の展望. 日本生態学会誌 62(1): 95-109 DOI: 10.18960/seitai.62.1_95
山道真人 (2011) 迅速な進化と表現型可塑性が個体群動態に及ぼす影響. 数理解析研究所講究録 1751: 140-147 [PDF]
山道真人・印南秀樹 (2011) 始めよう!エコゲノミクス (6) 自然選択の検出(その2). 日本生態学会誌 61(2): 237-249 DOI: 10.18960/seitai.61.2_237
山道真人・印南秀樹 (2010b) 始めよう!エコゲノミクス (5) 自然選択の検出(その1). 日本生態学会誌 60(2): 293-302 DOI: 10.18960/seitai.60.2_293
山道真人・印南秀樹 (2010a) 始めよう!エコゲノミクス (4) 集団内変異データが語る過去:解析手法と理論的背景(その2). 日本生態学会誌 60(1): 137-148 DOI: 10.18960/seitai.60.1_137
津田吉晃・三村真紀子・内山憲太郎・三嶋賢太郎・井上みずき・鈴木節子・木村恵・山道真人・池田啓・中村琢磨・中尾勝洋・玉木一郎・高山浩司・伊原徳子 (2010) 第2回森林遺伝学関連勉強会の報告. 林木の育種 234: 45-47
山道真人・印南秀樹 (2009b) 始めよう!エコゲノミクス (3) 集団内変異データが語る過去:解析手法と理論的背景(その1). 日本生態学会誌 59(3): 339-349 DOI: 10.18960/seitai.59.3_339
山道真人・印南秀樹 (2009a) 始めよう!エコゲノミクス (2) ゲノムワイド関連マッピング. 日本生態学会誌 59(1): 105-113 DOI: 10.18960/seitai.59.1_105
山道真人・印南秀樹 (2008) 始めよう!エコゲノミクス (1) 局所適応と形質の分化. 日本生態学会誌 58(3): 241-247 DOI: 10.18960/seitai.58.3_241
山道真人 (2008) 階層ベイズとその反応拡散モデルへの応用. 日本数理生物学会ニュースレター 56: 10-15 [PDF]
山道真人 (2007) 市民参加型の長期的な調査から階層ベイズを用いてわかること. バードリサーチニュース 4(12): 2 [PDF]