"I wasn't down there with the molecules when I discovered it.. and I wasn't stoned on LSD, but by then my mind had learned how to get down there. I could sit on a DNA molecule and watch the moonrise go by" (Kary Mullis)
Something that has recently drawn my attention is a phrase by Kary Mullis, alluding to how he used the flexibility of thought he obtained from psychedelics to garner the intuitions that led to invention of the PCR reaction. This reveals the powerful "organisational" effects of psychedelics, just like transient expression of a hormone in development can have effects that far outlast its presence. Psychedelics can (in some situations) leave as a legacy an unusual abiility to bend the frames of thinking and perception. Above all, the image of him sitting on a DNA molecule and watching the sunrise is what stayed with me and has led me to explore some visual representations of this gripping idea.
Supplementary Figure 7: Gating Strategy
Paper Helix
Cytoskeletal
Transcriptome Fingerprints
the White Blood Web
The Gut-Brain-Immune Axis
Tissue Resident Immunity
Polymorphism
Dendrogram
I have recently been experimenting with Stable Diffusion to create some pieces with themes from the biological world, like viruses, DNA helices, circulatory systems and more...
in twenty minutes
E.coli divide again
while I do nothing
a clear agar plate
with no colonies in sight
-I forgot the DAP
while St Peter guards
Heaven's Gate, Thermo Phusion
guards the Golden Gate
Light-hearted haikus written in the Synthetic Biology @Institut Pasteur, while waiting for PCR to run
snapshots
high dimensionality
Below is a poem about how diversity is generated in the antibody repertoire, which I wrote for an Immunology Poetry Competition at the University of Oxford in 2020
( for those interested in the mechanisms, The Generation of Antibody Diversity O.Backhaus (2018) provides an excellent overview)
we were both lying on our backs one night,
gazing at the sparkling sky,
my son, I say, these stars so bright,
look just like antibodies to my eye.
an unbelievably diverse array,
a myriad of specks so pale,
all unique in their own way,
galaxies at a nanoscopic scale.
the size of this prodigious repertoire,
is so vast it remains controversial,
it exceeds our imagination by far,
- although it’s only virtual.
there’s a supermassive black hole,
a place called the bone marrow,
where clonal deletion gains control,
to make their numbers narrow.
some are much too reactive,
they bind self too profusely,
it would certainly be maladaptive,
to let them cause auto-immunity
dad, why not better control their creation?
oh dear, that’s an obscure experimentation,
involving imprecision, VDJ recombination,
non-templated addition and random association,
all this followed by celestial migration,
to the dark zone for somatic hypermutation,
and repeated orbiting for T-helper selection,
astronomical cycles of affinity maturation.
let’s not even mention cytosine deamination,
which would create a whole other constellation,
antibodies maybe need some optimisation
but are already a little miracle of evolution