Resources

Open Imaging Datasets

• OpenfMRI
• 1000 Functional Connectomes Project
• Human Connectome Project
  • If you plan on using these data, register for an account here and sign the Open Access Data Use Terms.
  • We will also be having a talk on the HCP on Saturday morning!

Tutorials

Beginner

• The Unix Shell
• Version Control with Git (we will have a talk/demo on this the first day of the hackathon)
• Programming with Python, R, or MATLAB
• Python for Programmers (intro to Python for people who have experience in another language)
• Scientific Python: Transitioning from MATLAB to Python

Intermediate/Advanced

• Python
  • Visualization in Python
  • Introduction to Python's Scikit-Learn (machine learning package in Python)
  • Pandas Cookbook (package for using data frames in Python)
  • Introduction to PsychoPy for Creating Experiments
• R
  • R for Reproducible Scientific Analysis
  • Intermediate R for Reproducible Scientific Analysis
• Neuroimaging-specific (all in Python!)
  • Brain-hacking 101
  • Image Processing in Neuroimaging Applications
  • Diffusion Imaging in Python
  • Neuroimaging in Python
  • Machine Learning for Data-driven Neuroscience
  • Image Processing for Data-driven Neuroscience
  • Multivariate Pattern Analysis with PyMVPA
  • Nilearn User Guide (package for machine learning for neuroimaging)
• Other
  • Advanced Unix and Make
  • Docker for Scientists (an alternative to using virtual machines)
  • Databases and SQL
  • From Excel to a Database
  • Visualizing Your Data on the Web Using D3