Publications

1.              Cabello-Garcia J., Mukherjee R., Bae W., Stan GBV., Ouldridge T.E. Information propagation through enzyme-free catalytic templating of DNA dimerization with weak product inhibition. Nat. Chem, 2025.

2.              Smith F., Sengar A., Stan GBV., Ouldridge TE., Stevens M., Goertz J., Bae W*. Overcoming the speed limit of four-way DNA branch migration with bulges in toeholds. Nano Letters, under revision.

3.              Huang, Z., Moiseev, R. V., Melides, S. S., Bae, W., Jurewicz, I., Khutoryanskiy, V. V., & Keddie, J. L. Pickering emulsions stabilised with oligoglycine-functionalised nanodiamond as a model system for ocular drug delivery applications. Soft Matter, 2023,19, 5513-5526

4.              Climent-Catala, A., Ouldridge, T. E., Stan, G., Bae, W*. Building an RNA-based Toggle Switch using Inhibitory RNA Aptamers. ACS Synth. Biol. 2022, 11 (2), 562-569.

5.              Plesa, T., Stan, G., & Ouldridge, T. E. Bae, W. Quasi-robust control of biochemical reaction networks via stochastic morphing. J. R. Soc. Interface. 2021, 18 (177).

6.              Bae, W.*; Yoon, T. Y.; Jeong, C. H. Direct evaluation of self-quenching behavior of fluorophores at high concentrations using an evanescent field. PLOS ONE. 2021, 16(2).

7.              Bae, W.; Stan, GB.; Ouldridge, TE. In situ generation of RNA complexes for synthetic molecular strand displacement circuits in autonomous systems. Nano Lett. 2021, 21, 1,  265–271.

8.              Cabello-garcia, J., Bae, W., Stan, G. V, & Ouldridge, T. E. Handhold-mediated strand displacement : a nucleic acid-based mechanism for generating far-from-equilibrium assemblies through templated reactions. ACS Nano. 2020, 15, 2, 3272–3283

9.              Funck, T.; Liedl, T.; Bae, W*. Dual Aptamer-Functionalized 3D Plasmonic Metamolecule for Thrombin Sensing. Appl. Sci. 2019, 9, 3006.

10.           Bae, W.; Kocabey, S.; Liedl, T. DNA Nanostructures in Vitro, in Vivo and on Membranes. Nano Today, 2019, 26, 98–107

11.           Kempter, S.; Khmelinskaia, A.; Strauss, M. T.; Schwille, P.; Jungmann, R.; Liedl, T.; Bae, W*. Single Particle Tracking and Super-Resolution Imaging of Membrane-Assisted Stop-and-Go Diffusion and Lattice Assembly of DNA Origami. ACS Nano 2019, 13, 2, 996–1002.

12.           Nicoli, F.; Barth, A.; Bae, W.; Neukirchinger, F.; Crevenna, A. H.; Lamb, D. C.; Liedl, T. Directional Photonic Wire Mediated by Homo-Förster Resonance Energy Transfer on a DNA Origami Platform. ACS Nano 2017, 11, 11264–11272.

13.           Maier, A. M.; Bae, W.; Schiffels, D.; Emmerig, J. F.; Schiff, M.; Liedl, T. Self-Assembled DNA Tubes Forming Helices of Controlled Diameter and Chirality. ACS Nano 2017, 11, 1301–1306.

14.           Nickels, P. C.; Wünsch, B.; Holzmeister, P.; Bae, W.; Kneer, L. M.; Grohmann, D.; Tinnefeld, P.; Liedl, T. Molecular Force Spectroscopy with a DNA Origami-Based Nanoscopic Force Clamp. Science (80-. ). 2016, 354, 305–307.

15.           Kocabey, S.; Kempter, S.; List, J.; Xing, Y.; Bae, W.; Schiffels, D.; Shih, W. M.; Simmel, F. C.; Liedl, T. Membrane-Assisted Growth of DNA Origami Nanostructure Arrays. ACS Nano 2015, 9, 3530–3539.

16.           Bae, W.; Kim, K.; Min, D.; Ryu, J. K.; Hyeon, C.; Yoon, T. Y. Programmed Folding of DNA Origami Structures through Single-Molecule Force Control. Nat. Commun. 2014, 5, 5654.

17.           Bae, W.; Choi, M. G.; Hyeon, C.; Shin, Y. K.; Yoon, T. Y. Real-Time Observation of Multiple-Protein Complex Formation with Single-Molecule FRET. J. Am. Chem. Soc. 2013, 135, 10254–10257.

18.           Diao, J.; Ishitsuka, Y.; Bae, W. Single-Molecule FRET Study of SNARE-Mediated Membrane Fusion. Biosci. Rep. 2011, 31, 457–463.