ConQuR: Batch effects removal for microbiome data via conditional quantile regression. R.Â
DeepEn-Phy: Deep ensemble learning over the microbial phylogenetic tree. Python.
MOSAIC: A pipeline for microbiome studies analytical integration and correction. Python, R, Shell.
SurvBal: Compositional microbiome balances for survival outcomes. [Shiny App]. R.
WEE: Weighted estimated equation approaches in genetic case-control studies. R.
ZINQ: Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach. R.
ZINQ-L: A zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data. R.
ZIQ: Statistical inference in quantile regression for zero-inflated outcomes. R.
ZIQRank: Zero-inflated quantile rank-score based test for scRNA-seq differential gene expression analysis. R.