EXAMPLE APPLICATION: VvEXPA14 (VIT_13s0067g02930) co-expression network
EXAMPLE APPLICATION: VvEXPA14 (VIT_13s0067g02930) co-expression network
As VvEXPA14 is placed on Chr13, download the corresponding zipped file and extract the folder with the VIT code: VIT_13s0067g02930. In this example, there are three files: i. Co-expressed gene information and enrichment analysis results (FDR < 0.05) for ii. MapMan BIN functional categories and iii. select cis-regulatory elements.Table 1: The top 10 co-expressed genes of VvEXPA14 and relevant information. See raw file for the full list.
As VvEXPA14 is placed on Chr13, download the corresponding zipped file and extract the folder with the VIT code: VIT_13s0067g02930. In this example, there are three files: i. Co-expressed gene information and enrichment analysis results (FDR < 0.05) for ii. MapMan BIN functional categories and iii. select cis-regulatory elements.Table 1: The top 10 co-expressed genes of VvEXPA14 and relevant information. See raw file for the full list.
Query = 12xV1 code for the query gene
Target = 12xV1 code of the co-expressed gene
Frequency = Frequency of co-expression interaction(s) present across individual GCNs
Condition = ID of experiment where the co-expression interaction is top-ranked (i.e. top 300) and the corresponding PCC value of the interaction
Function_Vnet = VitisNet annotation of co-expressed target
Network_Vnet = VitisNet classification of co-expressed target
BIN = MapMan BIN classification of co-expressed target
Query = 12xV1 code for the query gene
Target = 12xV1 code of the co-expressed gene
Frequency = Frequency of co-expression interaction(s) present across individual GCNs
Condition = ID of experiment where the co-expression interaction is top-ranked (i.e. top 300) and the corresponding PCC value of the interaction
Function_Vnet = VitisNet annotation of co-expressed target
Network_Vnet = VitisNet classification of co-expressed target
BIN = MapMan BIN classification of co-expressed target