Research software:
Research software:
Embedded Files
- 2018: “serpentin binning”, Locally smearing noisy regions in Hi-C contact maps as a prelude to differential analyses. https://github.com/koszullab/serpentine
- 2012 – 2018: “nucleoid” and “crosslink”, high performance Montecarlo simulations of polymer Brownian dynamics. Freely available for the community at https://github.com/scovit/nucleoid and https://github.com/scovit/crosslink.
- 2014 – 2015: DADE – the 3C DATA Devouring protocol, big-data pipeline for process and analysis of 3C/HiC genomics datasets. https://github.com/scovit/dade
- 2012: Web-application: Nucleoid Survey Tools, http://www.lcqb.upmc.fr/nust/ . It consists in a database and instruments of genomic data processing and analysis. The website allows private upload of datasets, and implements instruments to reveal aggregations, at a variable observation scale, of genes along the genome of Escherichia Coli. Source available on github: https://github.com/scovit/nust-helico
Other publicly available authored tools at https://github.com/scovit
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