Embedded Files
Our result page is divided into 4 individual sections:
Our result page is divided into 4 individual sections:
- Query Summary
- Result Summary
- Results Summary
- Text Files
'Query Summary' Section
'Query Summary' Section
The Query Summary section provides 4 types of information about the user's request. These include:
The Query Summary section provides 4 types of information about the user's request. These include:
i. Server-assigned job ID
i. Server-assigned job ID
ii. Total number of sequences
ii. Total number of sequences
iii. Number of invalid sequences
iii. Number of invalid sequences
iv. Ensemble approach used
iv. Ensemble approach used
A unique 'Job ID' is created by the server for each request. This is done to store and trace the results of the user's query.
A unique 'Job ID' is created by the server for each request. This is done to store and trace the results of the user's query.
The 'Total number of sequences' displays the total number of sequences entered by the user into the server.
The 'Total number of sequences' displays the total number of sequences entered by the user into the server.
Some sequences may not be interpreted due to the restrictions of the server. 'Number of sequences that do not meet the criteria' displays the number of sequences that have been ignored by the server.
Some sequences may not be interpreted due to the restrictions of the server. 'Number of sequences that do not meet the criteria' displays the number of sequences that have been ignored by the server.
The 'Ensemble Approach' is the approach selected by the user, there are two options available:
The 'Ensemble Approach' is the approach selected by the user, there are two options available:
1. Ensemble by Consensus (without probability)
1. Ensemble by Consensus (without probability)
2. Ensemble by Average (with probability)
2. Ensemble by Average (with probability)
'Results Summary' Section
'Results Summary' Section
To provide broad overview of the analysis, Results Summary provides you the following information:
i. Number of Sequences Classified as Vaccine Candidate and;
ii. Number of Sequences Classified as Non Vaccine Candidate
To provide broad overview of the analysis, Results Summary provides you the following information:
i. Number of Sequences Classified as Vaccine Candidate and;
ii. Number of Sequences Classified as Non Vaccine Candidate
'Results' Section
'Results' Section
This section contains a single table consisting of the following information:
This section contains a single table consisting of the following information:
i. Sequence ID which was extracted from the FASTA inputs.
i. Sequence ID which was extracted from the FASTA inputs.
ii. Predicted Class is assigned to each Sequence ID based on the analysis done by Vaxi-DL's Deep Learning model.
ii. Predicted Class is assigned to each Sequence ID based on the analysis done by Vaxi-DL's Deep Learning model.
iii. Probability (%) is assigned to each Sequence ID based on the analysis done by Vaxi-DL's Deep Learning model. It signifies how certain the model is about a sequence's classification.
iii. Probability (%) is assigned to each Sequence ID based on the analysis done by Vaxi-DL's Deep Learning model. It signifies how certain the model is about a sequence's classification.
For example, XP_123456 is classified as a vaccine candidate with probability (%) 88.44%, it means that our model is saying that XP_123456 is a vaccine candidate with 0.8844 probability and 0.1156 probability for the non-vaccine candidate. We display the classification with maximum probability.
For example, XP_123456 is classified as a vaccine candidate with probability (%) 88.44%, it means that our model is saying that XP_123456 is a vaccine candidate with 0.8844 probability and 0.1156 probability for the non-vaccine candidate. We display the classification with maximum probability.
(See how we obtain this https://sites.google.com/view/vaxidl/3-results/probability-optimization) [Only available when Ensemble by Average is selected]
(See how we obtain this https://sites.google.com/view/vaxidl/3-results/probability-optimization) [Only available when Ensemble by Average is selected]
'Text Files' Section
'Text Files' Section
This section contains the 3 downloadable text files. These include:
This section contains the 3 downloadable text files. These include:
i. Query Summary CSV File: Contains the combined data of Query Summary and Results Summary in CSV format.
i. Query Summary CSV File: Contains the combined data of Query Summary and Results Summary in CSV format.
ii. Prediction CSV File: Contains the data of Results Summary section in CSV format.
ii. Prediction CSV File: Contains the data of Results Summary section in CSV format.
iii. Sequences Excluded File: Contains the Sequence IDs of ignored sequences that don't meet the criteria.
iii. Sequences Excluded File: Contains the Sequence IDs of ignored sequences that don't meet the criteria.
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