Packages

PairClone

Estimating latent tumor cell subpopulations from mutation pairs in next-generation sequencing data.

TreeClone

Estimating latent tumor cell phylogenies from mutation pairs in next-generation sequencing data.

RNDClone

Estimating the genotypes and gene expression profiles of latent tumor cell subpopulations by integrating DNA and RNA data.

bspmis

Estimating treatment effects in longitudinal studies with missing outcomes data.

RoBoT

A robust Bayesian hypothesis method for basket trials.

RNDClone

Estimating latent tumor cell subpopulations and transcription rates from DNA and RNA sequence data.

(Paper is not yet published. Contact me if interested.)

PoD-TPI

Accelerating phase I dose-finding designs.

(Paper is not yet published. Contact me if interested.)

SUBA

Subgroup-based adaptive designs for multi-arm biomarker trials.

(Confidential. Contact me if interested.)