On this page, you can find all the past Author's Summaries.
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Complexity-stability relationships in competitive disordered dynamical system
O Mazzarisi, M Smerlak - Phys. Rev. E (2024)
https://journals.aps.org/pre/abstract/10.1103/PhysRevE.110.054403
Diversity begets stability: Sublinear growth and competitive coexistence across ecosystems
I Hatton, O Mazzarisi, A Altieri, M Smerlak - Science (2024)
Estimating mutation rates under heterogeneous stress responses
Lucy Lansch-Justen , Meriem El Karoui, Helen K. Alexander - PLOS Comp. Bio. (2024)
Alternative cliques of coexisting species in complex ecosystems
Guim Aguadé-Gorgorió and Sonia Kéfi - J. Phys. Complex. (2024)
Structured community transitions explain the switching capacity of microbial systems
Chengyi Long, Jie Deng, Jen Nguyen, Yang-Yu Liu, Eric J. Alm, Ricard Solé, and Serguei Saavedra - PNAS (2024)
Fingering Instability Accelerates Population Growth of a Proliferating Cell Collective
Yiyang Ye (叶毅扬) and Jie Lin (林杰) - Physical Review Letters (2023)
Environment-organism feedbacks drive changes in ecological interactions
Oliver J. Meacock and Sara Mitri - bioarxiv (2023)
Orientational dynamics and rheology of active suspensions in weakly viscoelastic flows
Akash Choudhary, Sankalp Nambiar & Holger Stark - Communications Physics volume 6 (2023)
Dynamic proteome trade-offs regulate bacterial cell size and growth in fluctuating nutrient environments
Kratz, J.C., Banerjee, S. - Commun Biol 6, 486 (2023)
Eco-evolutionary modelling of microbial syntrophy indicates the robustness of cross-feeding over cross-facilitation
G. Boza, G. Barabás, I. Scheuring & I. Zachar - Scientific Reports 2023
Microbial population dynamics decouple growth response from environmental nutrient concentration
Justus Wilhelm Fink, Noelle A. Held, and Michael Manhart - PNAS 2023
Environmental and ecological controls of the spatial distribution of microbial populations in aggregates
Martinez-Rabert, C van Amstel, C Smith, WT Sloan, R Gonzalez-Cabaleiro - Plos Comput Biol 2022
Feedback linking cell envelope stiffness, curvature, and synthesis enables robust rod-shaped bacterial growth
S al-Mosleh, A Gopinathan, CD Santangelo, KC Huang, ER Rojas - PNAS 2022
Robust replication initiation from coupled homeostatic mechanisms
Mareike Berger & Pieter Rein ten Wolde - Nat Commun 2022
A leader cell triggers end of lag phase in populations of Pseudomonas fluorescens
Maxime Ardré, Guilhem Doulcier, Naama Brenner, Paul B Rainey (2022) - MicroLife
Quantifying the impact of ecological memory on the dynamics of interacting communities
Moein Khalighi, Guilhem Sommeria-Klein, Didier Gonze, Karoline Faust, Leo Lahti (2022) - PloS Comput Biol
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009396
Coexistence in diverse communities with higher-order interactions
Theo Gibbs, Simon A. Levin, Jonathan M. Levine (2022) - PNAS
Theory for Transitions Between Exponential and Stationary Phases: Universal Laws for Lag Time
Yusuke Himeoka, Kunihiko Kaneko (2017) - Phys. Rev. X
https://journals.aps.org/prx/abstract/10.1103/PhysRevX.7.021049
Multiple social encounters can eliminate Crozier’s paradox and stabilise genetic kin recognition
Thomas W. Scott, Alan Grafen & Stuart A. West (2022) - Nat Commun
Size regulation of multiple organelles competing for a limiting subunit pool
Deb Sankar Banerjee and Shiladitya Banerjee (2022) - Plos Comput Biol
Arrested coalescence of multicellular aggregates
David Oriola, Miquel Marin-Riera, Kerim Anlaş, Nicola Gritti, Marina Sanaki-Matsumiya, Germaine Aalderink, Miki Ebisuya, James Sharpeab and Vikas Trivedi (2022) - Soft Matter
Universal constraint on nonlinear population dynamics
Kyosuke Adachi, Ryosuke Iritani, Ryusuke Hamazaki (2022) - Commun Phys
Emergent coexistence in multispecies microbial communities
Chang-Yu Chang, Djordje Bajic, Jean Vila, Sylvie Estrela, Alvaro Sanchez (2022) - bioRxiv https://t.co/ujo4pj85mt
Dynamical systems theory of cellular reprogramming
Yuuki Matsushita, Tetsuhiro S. Hatakeyama, and Kunihiko Kaneko (2022) - Phys. Rev. Research. https://journals.aps.org/prresearch/abstract/10.1103/PhysRevResearch.4.L022008
Synchronization of a genetic oscillator with the cell division cycle
Gabriel Knotz, Ulrich Parlitz and Stefan Klumpp (2022) - Soft MatterNew Journal of Physics. https://iopscience.iop.org/article/10.1088/1367-2630/ac5c16/meta
Motion of an active particle with dynamical disorder
Koushik Goswamia and Rajarshi Chakrabarti (2022) - Soft Matter. https://pubs.rsc.org/en/content/articlelanding/2022/SM/D1SM01816G
Self-organization of collective escape in pigeon flocks
Papadopoulou M, Hildenbrandt H, Sankey DWE, Portugal SJ, Hemelrijk CK (2022) - PLoS Comput Biol 18(1): e1009772. https://doi.org/10.1371/journal.pcbi.1009772
Embedded control of cell growth using tunable genetic systems
Fusco, V, Salzano, D, Fiore, D, di Bernardo, M. - Int J Robust Nonlinear Control. 2022; 1- 15. doi:10.1002/rnc.5982
Suboptimal resource allocation in changing environments constrains response and growth in bacteria
Rohan Balakrishnan, Roshali T de Silva, Terence Hwa, Jonas Cremer - Mol Syst Biol. (2021) 17: e10597 https://doi.org/10.15252/msb.202110597
A traveling-wave solution for bacterial chemotaxis with growth
Avaneesh V. Narla, Jonas Cremer, Terence Hwa - Proceedings of the National Academy of Sciences Nov 2021, 118 (48) e2105138118; DOI: 10.1073/pnas.2105138118
Single-cell growth inference of Corynebacterium glutamicum reveals asymptotically linear growth
Joris JB Messelink, Fabian Meyer, Marc Bramkamp, Chase P Broedersz - eLife 2021;10:e70106 DOI: 10.7554/eLife.70106
When to wake up? The optimal waking-up strategies for starvation-induced persistence
Himeoka Y, Mitarai N (2021) - PLoS Comput Biol 17(2): e1008655. https://doi.org/10.1371/journal.pcbi.1008655
On the optimality of the enzyme–substrate relationship in bacteria
Dourado H, Mori M, Hwa T, Lercher MJ (2021) - PLoS Biol 19(10): e3001416. https://doi.org/10.1371/journal.pbio.3001416
The evolution of strategy in bacterial warfare via the regulation of bacteriocins and antibiotics
Rene Niehus, Nuno M Oliveira, Aming Li, Alexander G Fletcher, Kevin R Foster - eLife 2021;10:e69756 DOI: 10.7554/eLife.69756
Environmental fluctuations reshape an unexpected diversity-disturbance relationship in a microbial community
Christopher P Mancuso, Hyunseok Lee, Clare I Abreu, Jeff Gore, Ahmad S Khalil - eLife 2021;10:e67175 DOI: 10.7554/eLife.67175
Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia
Winkle JJ, Karamched BR, Bennett MR, Ott W, Josić K (2021) - PLoS Comput Biol 17(9): e1009381. https://doi.org/10.1371/journal.pcbi.1009381
The Correlation Between Cell and Nucleus Size is Explained by an Eukaryotic Cell Growth Model
Yufei Wu, Paul Janmey, Sean X. Sun bioRxiv 2021.09.01.458491; https://doi.org/10.1101/2021.09.01.458491
Large Deviation Principle Linking Lineage Statistics to Fitness in Microbial Populations
Ethan Levien, Trevor GrandPre, and Ariel Amir Phys. Rev. Lett. 125, 048102 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.125.048102
Disentangling Intrinsic and Extrinsic Gene Expression Noise in Growing Cells
Jie Lin and Ariel Amir Phys. Rev. Lett. 126, 078101 https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.126.078101
Virus-Host Interactions Shape Viral Dispersal Giving Rise to Distinct Classes of Traveling Waves in Spatial Expansions
Michael Hunter, Nikhil Krishnan, Tongfei Liu, Wolfram Möbius, and Diana Fusco Phys. Rev. X 11, 021066 https://journals.aps.org/prx/abstract/10.1103/PhysRevX.11.021066
Predicting microbial growth dynamics in response to nutrient availability
Nev OA, Lindsay RJ, Jepson A, Butt L, Beardmore RE, Gudelj I (2021) - PLoS Comput Biol 17(3): e1008817. https://doi.org/10.1371/journal.pcbi.1008817
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