Publications

Publications

† First/co-first author, * Corresponding/co-corresponding author

1.     Tram Thi Hong Le, Jaehun Jung, Linh Thanh Nguyen, Min Ju Shon, and Byoung Choul Kim*, LNA-Modified DNA Force Probe Reveals High-Force Regulation of YAP Dynamics through Biphasic Talin-Vinculin Interactions in Breast Cancer Cells, ACS Nano (IF = 16.0), Accepted

2.     Hyeon Ju Kang, Jun Min, Vasanthan Ravichandran, Quan Truong Hoang, Le Thi Hong Tram, Byoung Choul Kim, Min Suk Shim, Bioreducible polysorbate-based micelles encapsulating mitochondria-targeting sonosensitizers for efficient chemo-sonodynamic cancer therapy, Biotechnology and Bioprocess Engineering (IF = 3.0), 2025

3.     Chan Yeong Kim, Dong Jin Park, Beung Chul Ahn, Seungbyn Baek, Min Hee Hong, Linh Thanh Nguyen, Sun Ha Hwang, Nayeon Kim, Daniel Podlesny, Askarbek Orakov, Christian Schudoma, Shahriyar Mahdi Robbani, Hyo Sup Shim, Hong In Yoon, Chang Young Lee, Seong Yong Park, Dongeun Yong, Mina Han, Peer Bork, Byoung Choul Kim*, Sang-Jun Ha*, Hey Ryun Kim*, and Insuk Lee*, A conserved pilin from uncultured gut bacterial clade TANB77 enhances cancer immunotherapy, Nature Communications (IF = 14.7), 2024

4.     Jun Min, Dohyun Jeung, Dae Gyun Lee, Hyeon Ju Kang, Ha Young Jo, Le Thi Hong Tram, Han Chang Kang, Joo Young Lee, Hye Suk Lee, Won Jong Rhee, Byoung Choul Kim, Yong-Yeon Cho, and Min Suk Shim, Safe and efficient treatment of drug-resistant colorectal cancer cells using kaempferol-loaded exosomes, Biotechnology and Bioprocess Engineering (IF = 2.5), 2024

5.     Jinsei Jung, Sun Young Joo, Hyehyun Min, Jae Won Roh, Kyung Ah Kim, Ji-Hyun Ma, John Hoon Rim, Jung Ah Kim, Se Jin Kim, Seung Hyun Jang, Young Ik Koh, Hye-Youn Kim, Ho Lee, Byoung Choul Kim, Heon Yung Gee*, Jinwoong Bok*, Jae Young Choi*, and Je Kyung Seong*, LMYH1 deficiency disrupts the outer hair cell electromotility, resulting in hearing loss, Experimental & Molecular Medicine (IF = 9.5), 2024

6.     Le Thi Hong Tram and Byoung Choul Kim*, DNA Origami Force Probes Illuminate T Cell Receptor Forces at the Immune Synapse, Nature Nanotechnology (IF = 38.1), 2024

7.     Seungwon Ryu, Kyung Ah Kim, Jinwoo Kim, Dong Hun Lee, Yong-Soo Bae, Hajeong Lee, Byoung Choul Kim, and Hye Young Kim, The Protective Role of Integrin α4β7 and Amphiregulin-Expressing Innate Lymphoid Cells in Lupus Nephritis, Cellular & Molecular Immunology (IF = 21.8), 2024

8.     Hyeon Ju Kang, Quan Truong Hoang, Jun Min, Min Soo Son, Le Thi Hong Tram, Byoung Choul Kim, Youngjun Song, and Min Suk Shim, Efficient Combination Chemo-Sonodynamic Cancer Therapy Using Mitochondria-Targeting Sonosensitizer-Loaded Polysorbate-Based Micelles, International Journal of Molecular Sciences (IF = 4.9), 2024

9.     Ji Yoon Lee, Soye Lee, Haneul Lee, Tham Truong Phuong Tran, Byoung Choul Kim, and Won Jong Rhee, In Situ Simultaneous Detection of Surface Protein and microRNA in Clustered Extracellular Vesicles from Cancer Cell Lines Using Flow Cytometry, ACS Biomaterials Science & Engineering (IF = 5.67), 2023

10.  Young Kim, Le Thi Hong Tram, Kyung Ah Kim, and Byoung Choul Kim*, Defining integrin tension required for chemotaxis of metastatic breast cancer cells in confinement, Advanced Healthcare Materials (IF = 10), 2023

11.  Chaewon Park, Eunjung Kim, Geunseon Park, Byoung Choul Kim, Srivithya Vellampatti, Jong-Woo Lim, Sojeong Lee, Soohyun Chung, Sung-Hoon Jun, Sangyoon Lee, Sajid Ali, Minjoo Yeom, Daesub Song, and Seungjoo Haam, Membrane Rigidity-Tunable Fusogenic Nanosensor for High Throughput Detection of Fusion-Competent Influenza A Virus, Advanced Functional Materials (IF = 18.5), 2023

12.  Jinyoung Byun, Srivithya Vellampatti, Prathit Chatterjee, Byoung Choul Kim*, and Juyoung Lee*, KPI domain plays an important role in APP dimerization, Journal of Computational Chemistry (IF = 3.4), 2023

13.  Ivie Aifuwa, Byoung Choul Kim, Pratik Kamat, Bartholomew Starich, Anshika Agrawal, Derin Tanrioven, Teresa R Luperchio, Angela M Jimenez Valencia, Tania Perestrelo, Karen Reddy, Taekjip Ha, Jude M Philip, Senescent stroma induces nuclear deformations in cancer cells via the inhibition of RhoA/ROCK/myosin II-based cytoskeletal tension, PNAS Nexus (IF = Not Available), 2022

14.  Kyung Ah Kim, Srivithya Vellampatti, and Byoung Choul Kim*, Characterization of integrin molecular tension of human breast cancer cells on anisotropic nanopatterns, Frontiers in Molecular Biosciences (IF = 5), 2022

15.  Kyung Ah Kim, Srivithya Vellampatti, Sun Ha Hwang, and Byoung Choul Kim*, DNA-based single molecule force sensor for characterization of α5β1 integrin tension required for invadopodia formation and maturation in cancer cells, Advanced Functional Materials (IF = 19), 2022

16.  Quan Truong Hoang, Miyeon Kim, Byoung Choul Kim, Chang Yeon Lee, and Min Suk Shim. Pro-oxidant drug-loaded porphyrinic zirconium metal-organic-frameworks for cancer-specific sonodynamic therapy, Colloids and Surfaces B: Biointerfaces (IF = 5.8), 2022

17.  Sayab, Nawab, Farman Ullah Dawar, Muhammed Nughman, Muhammad Rauf, Muhammad Nasir Khan Khattak, and Byoung Choul Kim*, Biodegradation of Petroleum by Bacteria Isolated from Fishes of Indian Ocean, Brazilian Journal of Biology (IF = Not Available), 2022.

18.  Myung Hyun Jo, Byoung Choul Kim, Keewon Sung, Reynold A. Panettieri Jr. Steven An*, Jian Liu*, and Taekjip Ha*, Molecular mechanical mapping of the excitation-contraction coupling in human airway smooth muscle cells, ACS Nano (IF = 18.027), 2021.

19.  Woon Yong Kwon, Gil Joon Suh, Yoon Sun Jung, Seung Min Park, Subi Oh, Sung Hee Kim, A Rum Lee, Byoung Choul Kim, Kyung Su Kim, Carl J Hauser, and Kiyoshi Itagaki, Circulating mitochondrial N-formyl peptides contribute to poor prognosis in septic shock patients, PNAS (IF = 12.779), 2021.

20.  Gehua Zhen, Yusheng Li, Chuanlong Wu, Shouan Zhu, Ruomei Wang, X. Edward Guo, Byoung Choul Kim, Jessie Huang, Yizhong Hu, Yang Dan, Mei Wan, Taekjip Ha, Steven An, and Xu Cao, Mechanical Stress Determines the Configuration of TGF-beta Activation in Articular Cartilage, Nature Communications (IF = 17.694), 2021.

21.  Yeong Chae Ryu, Kyung Ah Kim, Byoung Choul Kim, Hui-Min David Wang, and Byeong Hee Hwang, Fusion peptide-mediated siRNA delivery using self-assembly complex, Journal of Nanobiotechnology (IF = 9.429), 2021.

22.  Young Kim, Kyung Ah Kim, and Byoung Choul Kim, Double stranded DNA force sensor for studying of molecular level forces required to activate signaling pathways, Journal of The Korean Physical Society (IF = 0.657), 2021.

23.  Wenji Jin, Seongjin Ha, Jae-Ha Myung*, Byoung Choul Kim*, and Dae-Hwan Park*, Ceramic layered double hydroxide nanohybrids for therapeutic applications, Journal of The Korean Ceramic Society (IF = 1.674), 2020.

24.  Seungman Park, Yu Shi, Byoung Choul Kim, Myung Hyun Jo, Leiani O. Cruz, Zheming Gou, Taekjip Ha, Li-Fan Lu, Daniel Reich, and Yun Chen, Force-Dependent Trans-endocytosis by Breast Cancer Cells Depletes Costimulatory Receptor CD80 and Attenuates T Cell Activation, Biosensors and Bioelectronics (IF = 10.618), 2020

25.  S Afridi, Nawab Ali, M Niaz, S.I. Hussain, F. U. Farman, and Byoung Choul Kim*, Molecular characterization, and production of bacterial amylases from Shahdara spring Pakistan, Applied Ecology and Environmental Research (IF = 0.711), 2020.

26.  Jong-Hyeok Jung, Hyun Jung Hong, Jae Young Cho, Aziz Gharderpour, Bumseo Baik, Yong Hur, Byoung Choul Kim, Donghyun Kim, Seung-Yong Seong, Jae-Young Lim and Sang-Uk Seo, Differential induction of interleukin-1β by uropathogenic Escherichia Coli correlates with its phylotype and serum C-reactive protein levels in infant patients in Korea, Scientific Reports (IF = 3.998), 2019

27.  Minsub Han and Byoung Choul Kim, Effect of non-uniform fields on DNA entering nano-channel, Journal of Mechanical Science and Technology (IF = 1.345), 2019

28.  Tuğba Topal, Byoung Choul Kim, Luis Villa-Diaz, Cheri Deng, Shuichi Takayama, and Paul Krebsbach, Rapid translocation of pluripotency-related transcription factors by external uniaxial forces, Integrative Biology (IF = 2.291), 2019

29.  Wanqu Zhu†, Byoung Choul Kim†, Mingyi Wang, Jessie Huang, Abraham Isak, Natalia Bexiga, Robert Monticone, Taekjip Ha, Edward Lakatta, and Steven An, TGF-β1 reinforces arterial againg in the vascular smooth muscle cell through a long-range regulation of the cytoskeletal stiffness, Scientific Reports (IF = 4.011), 2018, * equal contribution  

30.  Pushpendra Singh, Sree Kumar Ramachandran, Jin Zhu, Byoung Choul Kim, Debojyoti Biswas, Taekjip Ha, Pablo A Iglesias, and Rong Li, Sphingolipids facilitate age asymmetry of membrane proteins in dividing yeast cells., Molecular Biology of the Cell (IF = 3.512), 2017

31.  Vincent C. Luca, Byoung Choul Kim, Chenghao Ge, Shinako Kakuda, Mehdi Roein-Peikar, Robert S. Haltiwanger, Cheng Zhu, Taekjip Ha, and K. Christopher Garcia, Notch-Jagged complex structure implicates mechanical force in ligand discrimination, Science (IF = 41.058), 2017

32.  Minsub Han, Byoung Choul Kim, Toshiki Matsuoka, M.D. Thouless, and Shuichi Takayama, Simulation of DNA linearization in gradually narrowing nanochannels, Biomicrofluidics (IF = 2.535), 2016.

33.  Farhan Chowdhury, Isaac T. S. Li, Thy Ngo, Ben J. Leslie, Byonug Choul Kim, Xuefeng Wang, Yann R. Chemla, Timothy M. Lohman, and Taekjip Ha, Tiny molecular forces are essential for Notch signaling, Nano Letters (IF = 12.712), 2016

34.  Sejoong Kim, Sasha Cai Lesher-Perez, Byoung Choul Kim, Cameron Yamanishi, Joseph Labuz, Brendan Leung, and Shuichi Takayama, Pharmacokinetic profile that reduces nephrotoxicity of gentamicin in a perfused kindney-on-a-chip, Biofabrication (IF = 5.240), 2016

35.  Byoung Choul Kim†, Priyan Weerappuli, M.D. Thouless, and Shuichi Takayama, Fracture fabrication of a multi-scale channel device that efficiently captures and linearizes DNA from dilute solutions, Lab on a Chip (IF = 5.586), 2015

36.  Byoung Choul Kim†, Christopher Moraes†, Jiexi Huang, M.D. Thouless, and Shuichi Takayama, Fracture-based fabrication of normally-closed and fully reversible dynamic micro-scale fluidic channels, Small (IF = 8.368), 2014, * equal contribution.

37.  Christopher Moraes, Byoung Choul Kim, Xiaoyue Zhu, Kristen L. Mills, Angela R. Dixon, M.D. Thouless, and Shuichi Takayama, Defining topologically complex protein matrices to manipulate cell shape in three dimensions, Lab on a Chip (IF = 6.115), 2014

38.  Byoung Choul Kim†, Christopher Moraes, Jiexi Huang, M.D. Thouless, and Shuichi Takayama, Fracture-based fabrication for biological applications, Biomaterials Science (IF = 3.831), 2014

39.  Jiexi Huang, Byoung Choul Kim, Shuichi Takayama, and M.D. Thouless, The control of crack arrays in thin films, Journal of Materials Science (IF = 2.371), 2014.

40.  Byoung Choul Kim†, Toshiki Matsuoka, Christopher Moraes, Jiexi Huang, M.D. Thouless, and Shuichi Takayama, Guided fracture on soft substrates creates crack arrays with controlled periodicity, Scientific Reports (IF = 5.078), 2013

41.  Toshiki Matsuoka, Byoung Choul Kim, Christopher Moraes, Minsub Han, and Shuichi Takayama, Micro- and nanofluidic technologies for epigenetic profiling, Biomicrofluidics (IF = 3.771), 2013

42.  Dongwook Lee, Onas Bolton, Byoung Choul Kim, Ji Ho Youk, Shuichi Takayama, and Jinsang Kim, Room Temperature Phosphorescence of Metal-free Organic Materials in Amorphous Polymer Matrices, Journal of the American Chemical Society (JACS) (IF = 11.444), 2013

43.  Cheng, Mou-Chi; Leske, Austin; Matsuoka, Toshiki; Byoung Choul Kim, Lee, Jae-Sung; Burns, Mark; Takayama, Shuichi, and Biteen, Julie. Super-Resolution Imaging of PDMS Nanochannels by Single-Molecule Micelle-Assisted Blink Microscopy, J. Phys. Chem (IF = 3.377), 2013

44.  Toshiki Matsuoka, Byoung Choul Kim†, Jiexi Huang†, Nicholas Douville†, M.D. Thouless and Shuichi Takayama, Nanoscale squeezing linearizes DNA and traps its fully elongated state, Nano Letters (IF = 13.025), 2012

45.  Chantiwas R, Park S, Soper SA, Byoung Choul Kim, Takayama S, Sunkara V, et al. Flexible fabrication and applications of polymer nanochannels and nanoslits. Chem Soc Rev (IF = 28.760), 2011