Hagedorn EJ, Perlin JR, Freeman RJ, Wattrus SJ, Han T, Mao C, Kim JW, Fernández-Maestre I, Daily ML, D'Amato C, Fairchild MJ, Riquelme R, Li B, Ragoonanan DAVE, Enkhbayar K, Henault EL, Wang HG, Redfield SE, Collins SH, Lichtig A, Yang S, Zhou Y, Kunar B, Gomez-Salinero JM, Dinh TT, Pan J, Holler K, Feldman HA, Butcher EC, van Oudenaarden A, Rafii S, Junker JP, Zon LI. Transcription factor induction of vascular blood stem cell niches in vivo. Dev Cell. 2023 Jun 19;58(12):1037-1051.e4. doi: 10.1016/j.devcel.2023.04.007. Epub 2023 Apr 28. PubMed PMID: 37119815; PubMed Central PMCID: PMC10330626. 

Huang Z, Dinh TT, Luscher E, Li S, Liu X, Won SY, Chen X. Genetic Screens for Floral Mutants in Arabidopsis thaliana: Enhancers and Suppressors. Methods Mol Biol. 2023;2686:131-162. doi: 10.1007/978-1-0716-3299-4_6. PubMed PMID: 37540357.

Dinh TT, Xiang M, Rajaraman A, Wang Y, Salazar N, Zhu Y, Roper W, Rhee S, Brulois K, O'Hara E, Kiefel H, Dinh TM, Bi Y, Gonzalez D, Bao EP, Red-Horse K, Balogh P, Gábris F, Gaszner B, Berta G, Pan J, Butcher EC. An NKX-COUP-TFII morphogenetic code directs mucosal endothelial addressin expression. Nat Commun. 2022 Dec 2;13(1):7448. doi: 10.1038/s41467-022-34991-2. PubMed PMID: 36460642; PubMed Central PMCID: PMC9718832.

Swaminathan G, Nguyen LP, Namkoong H, Pan J, Haileselassie Y, Patel A, Ji AR, Mikhail DM, Dinh TT, Singh H, Liao B, Vázquez-Montesino LM, Butcher EC, Habtezion A. The aryl hydrocarbon receptor regulates expression of mucosal trafficking receptor GPR15. Mucosal Immunol. 2021 Jul;14(4):852-861. doi: 10.1038/s41385-021-00390-x. Epub 2021 Mar 5. PubMed PMID: 33674764; PubMed Central PMCID: PMC7934811. 

Jiang X, Tian W, Tu AB, Pasupneti S, Shuffle E, Dahms P, Zhang P, Cai H, Dinh TT, Liu B, Cain C, Giaccia AJ, Butcher EC, Simon MC, Semenza GL, Nicolls MR. Endothelial Hypoxia-Inducible Factor-2α Is Required for the Maintenance of Airway Microvasculature. Circulation. 2019 Jan 22;139(4):502-517. doi: 10.1161/CIRCULATIONAHA.118.036157. PubMed PMID: 30586708; PubMed Central PMCID: PMC6340714.

Su T, Stanley G, Sinha R, D'Amato G, Das S, Rhee S, Chang AH, Poduri A, Raftrey B, Dinh TT, Roper WA, Li G, Quinn KE, Caron KM, Wu S, Miquerol L, Butcher EC, Weissman I, Quake S, Red-Horse K. Single-cell analysis of early progenitor cells that build coronary arteries. Nature. 2018 Jul;559(7714):356-362. doi: 10.1038/s41586-018-0288-7. Epub 2018 Jul 4. PubMed PMID: 29973725; PubMed Central PMCID: PMC6053322. 

Ocón B, Pan J, Dinh TT, Chen W, Ballet R, Bscheider M, Habtezion A, Tu H, Zabel BA, Butcher EC. A Mucosal and Cutaneous Chemokine Ligand for the Lymphocyte Chemoattractant Receptor GPR15. Front Immunol. 2017;8:1111. doi: 10.3389/fimmu.2017.01111. eCollection 2017. PubMed PMID: 28936214; PubMed Central PMCID: PMC5594226.

Pan J, Dinh TT, Rajaraman A, Lee M, Scholz A, Czupalla CJ, Kiefel H, Zhu L, Xia L, Morser J, Jiang H, Santambrogio L, Butcher EC. Patterns of expression of factor VIII and von Willebrand factor by endothelial cell subsets in vivo. Blood. 2016 Jul 7;128(1):104-9. doi: 10.1182/blood-2015-12-684688. Epub 2016 May 12. PubMed PMID: 27207787; PubMed Central PMCID: PMC4937354. 

Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. Correction: DNA Topoisomerase 1α Promotes Transcriptional Silencing of Transposable Elements through DNA Methylation and Histone Lysine 9 Dimethylation in Arabidopsis. PLoS Genet. 2015 Sep;11(9):e1005452. doi: 10.1371/journal.pgen.1005452. eCollection 2015 Sep. PubMed PMID: 26379054; PubMed Central PMCID: PMC4574932.

Nguyen LP, Pan J, Dinh TT, Hadeiba H, O'Hara E 3rd, Ebtikar A, Hertweck A, Gökmen MR, Lord GM, Jenner RG, Butcher EC, Habtezion A. Role and species-specific expression of colon T cell homing receptor GPR15 in colitis. Nat Immunol. 2015 Feb;16(2):207-213. doi: 10.1038/ni.3079. Epub 2014 Dec 22. PubMed PMID: 25531831; PubMed Central PMCID: PMC4338558. 

Dinh TT, Chen X. Chemical genetic screens using Arabidopsis thaliana seedlings grown on solid medium. Methods Mol Biol. 2015;1263:111-25. doi: 10.1007/978-1-4939-2269-7_9. PubMed PMID: 25618340.

Liu X, Dinh TT, Li D, Shi B, Li Y, Cao X, Guo L, Pan Y, Jiao Y, Chen X. AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. Plant J. 2014 Nov;80(4):629-41. doi: 10.1111/tpj.12658. Epub 2014 Oct 1. PubMed PMID: 25187180; PubMed Central PMCID: PMC4215321. 

Liu X, Gao L, Dinh TT, Shi T, Li D, Wang R, Guo L, Xiao L, Chen X. DNA topoisomerase I affects polycomb group protein-mediated epigenetic regulation and plant development by altering nucleosome distribution in Arabidopsis. Plant Cell. 2014 Jul;26(7):2803-17. doi: 10.1105/tpc.114.124941. Epub 2014 Jul 28. PubMed PMID: 25070639; PubMed Central PMCID: PMC4145115.

Dinh TT, Gao L, Liu X, Li D, Li S, Zhao Y, O'Leary M, Le B, Schmitz RJ, Manavella PA, Li S, Weigel D, Pontes O, Ecker JR, Chen X. DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis. PLoS Genet. 2014 Jul;10(7):e1004446. doi: 10.1371/journal.pgen.1004446. eCollection 2014 Jul. PubMed PMID: 24992598; PubMed Central PMCID: PMC4080997. 

Dinh TT, Luscher E, Li S, Liu X, Won SY, Chen X. Genetic screens for floral mutants in Arabidopsis thaliana: enhancers and suppressors. Methods Mol Biol. 2014;1110:127-56. doi: 10.1007/978-1-4614-9408-9_6. PubMed PMID: 24395255; PubMed Central PMCID: PMC4306286. 

Dinh TT, O'Leary M, Won SY, Li S, Arroyo L, Liu X, Defries A, Zheng B, Cutler SR, Chen X. Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana. Silence. 2013 Apr 5;4(1):1. doi: 10.1186/1758-907X-4-1. PubMed PMID: 23561294; PubMed Central PMCID: PMC3623655. 

Won SY, Li S, Zheng B, Zhao Y, Li D, Zhao X, Yi H, Gao L, Dinh TT, Chen X. Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana. Silence. 2012 Jun 7;3(1):6. doi: 10.1186/1758-907X-3-6. PubMed PMID: 22676624; PubMed Central PMCID: PMC3548752.

Dinh TT, Girke T, Liu X, Yant L, Schmid M, Chen X. The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element. Development. 2012 Jun;139(11):1978-86. doi: 10.1242/dev.077073. Epub 2012 Apr 18. PubMed PMID: 22513376; PubMed Central PMCID: PMC3347690.

Zhao Y, Yu Y, Zhai J, Ramachandran V, Dinh TT, Meyers BC, Mo B, Chen X. The Arabidopsis nucleotidyl transferase HESO1 uridylates unmethylated small RNAs to trigger their degradation. Curr Biol. 2012 Apr 24;22(8):689-94. doi: 10.1016/j.cub.2012.02.051. Epub 2012 Mar 29. PubMed PMID: 22464194; PubMed Central PMCID: PMC3350747. 

Ji L, Liu X, Yan J, Wang W, Yumul RE, Kim YJ, Dinh TT, Liu J, Cui X, Zheng B, Agarwal M, Liu C, Cao X, Tang G, Chen X. ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet. 2011 Mar;7(3):e1001358. doi: 10.1371/journal.pgen.1001358. Epub 2011 Mar 31. PubMed PMID: 21483759; PubMed Central PMCID: PMC3069122.

Yant L, Mathieu J, Dinh TT, Ott F, Lanz C, Wollmann H, Chen X, Schmid M. Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell. 2010 Jul;22(7):2156-70. doi: 10.1105/tpc.110.075606. Epub 2010 Jul 30. PubMed PMID: 20675573; PubMed Central PMCID: PMC2929098. 

Zhao L, Kim Y, Dinh TT, Chen X. miR172 regulates stem cell fate and defines the inner boundary of APETALA3 and PISTILLATA expression domain in Arabidopsis floral meristems. Plant J. 2007 Sep;51(5):840-9. doi: 10.1111/j.1365-313X.2007.03181.x. Epub 2007 Jun 15. PubMed PMID: 17573799; PubMed Central PMCID: PMC2629596.