Softwares & Codes
Constant Chemical Potential Molecular Dynamics (CμMD )
Asymmetric scheme:
This repository contains codes and input files required to run asymmetric (cannibalistic) CμMD simulations.
https://github.com/Tarakk/plumed-cumd
All input files related to this work can be found in the materials cloud archive as well.
Tarak Karmakar, Pablo M. Piaggi, Claudio Perego, Michele Parrinello, A Cannibalistic Approach to Grand Canonical Crystal Growth, Materials Cloud Archive 2020.0015/v1 (2020), doi: 10.24435/materialscloud:2020.0015/v1
Ref: A Cannibalistic Approach to Grand Canonical Crystal Growth
Tarak Karmakar, Pablo M Piaggi, Claudio Perego, Michele Parrinello
Journal of Chemical Theory and Computation, 14(5), 2678–2683, 2018 https://pubs.acs.org/doi/abs/10.1021/acs.jctc.8b00191
Spherical scheme:
This repository contains codes and input files required to run CμMD nucleation simulations.
https://github.com/Tarakk/plumed-cumd
All input files related to this work can be found in the materials cloud archive as well.
Tarak Karmakar, Pablo M. Piaggi, Michele Parrinello, Molecular Dynamics Simulations of Crystal Nucleation from Solution at Constant Chemical Potential, Materials Cloud Archive 2020.0013/v1 (2020), doi: 10.24435/materialscloud:2020.0013/v1
The details of the method can be found in the following paper:
Molecular Dynamics Simulations of Crystal Nucleation from Solution at Constant Chemical Potential Tarak Karmakar, Pablo M. Piaggi, and Michele Parrinello*
Cite this: J. Chem. Theory Comput. 2019, 15, 12, 6923–6930 Publication Date:October 28, 2019 https://doi.org/10.1021/acs.jctc.9b00795
CRYSTALLIZATION COLLECTIVE VARIABLE
This repository contains codes and scripts to calculate the three dimensional structure factors.
https://github.com/Tarakk/Crystallization
Ref: "Collective Variables for the Study of Crystallization"
Tarak Karmakar, Michele Invernizzi, Valerio Rizzi, and Michele Parrinello
See (and cite): https://doi.org/10.1080/00268976.2021.1893848