Publications

57) Choi H, Park JS, Hwang J-A, Kim S-K, Cha Y, Oh S-Y. (2024) Influence of biofloc technology and continuous flow systems on aquatic microbiota and water quality in Japanese eel aquaculture. Diversity 16(10): 601. https://doi.org/10.3390/d16100601

56) Oh S-Y (2024) The complete mitochondrial genome of Clonostachys farinosa (Bionectriaceae, Hypocreales). Mitochondrial DNA Part B 9(5): 583-587. https://doi.org/10.1080/23802359.2024.2347510

55) Kherlenchimeg N, Burenbaatar G, Baasanmunkh S, Tsegmed Z, Urgamal M, Bau T, Han S-K, Oh S-Y*, Choi HJ* (2024). Improved understanding of the macrofungal diversity of Mongolia: Species richness, conservation status, and an annotated checklist. Mycobiology 51(1): 13-29. https://doi.org/10.1080/12298093.2023.2297485 (*co-corresponding author)

54) Jang JE, Baasanmunkh S, Nyamgerel N, Oh S-Y, Song JH, Yusupov Z, Tojibaev K, Choi HJ (2024) Flower morphology of Allium (Amaryllidaceae) and its systematic significance. Plant Diversity 46(1): 3-27. https://doi.org/10.1016/j.pld.2023.06.009

53) Yang J, Woo JJ, Kim W, Oh S-Y, Hur JS (2023). Exploring the influence of climatic variables on mycobiome composition and community diversity in lichens: insights from structural equation modeling analysis. Environmental Microbiome 18: 79. https://doi.org/10.1186/s40793-023-00535-4

52) Yang J, Woo JJ, Oh S-Y, Kim W, Hur JS (2023) Fungal community inside lichen: a curious case of sparse diversity and high modularity. Environmental Microbiome 18: 73. https://doi.org/10.1186/s40793-023-00531-8

51) Hwang J-A, Park JS, Jeong HS, Kim H, Oh S-Y (2023) Productivity of fish and crop growth and characteristics of bacterial communities in the FLOCponics system. Fishes 8(8), 422. https://doi.org/10.3390/fishes8080422

50) Park KH*, Oh S-Y*, Cho Y, Seo CW, Kim JS, Yoo S, Lim J, Kim CS, Lim YW (2023). Mycorrhizal Fungal diversity associated with six understudied ectomycorrhizal trees in the Republic of Korea. Journal of Microbiology 61(8), 729-739. https://doi.org/10.1007/s12275-023-00073-1 (*: co-1st authors)

49) Cha Y, Oh S-Y (2023) Fungal diversity associated with Armadillidium Isopods: A case study in Central park of Gwacheon, South Korea. Diversity 15(4), 533. https://doi.org/10.3390/d15040533

48) Oh S-Y (2022) Unrecorded mycoparasitic fungus Sepedonium laevigatum isolated from wild mushrooms in South Korea. Journal of Mushrooms 20(4), 249-253. http://doi.org/10.14480/JM.2022.20.4.249

47) Son H, Oh S-Y, Lee K (2022) Genome Sequences of the Human-Skin-Originated Brevundimonas albigilva TT17 and the Soil-Originated B. albigilva KEME 9005-016T. Microbiology Resource Announcements, e00776-22. https://doi.org/10.1128/mra.00776-22

46) Yang JH, Oh S-Y, Kim W, Hur J-S (2022) Endolichenic fungal community analysis by pure culture isolation and metabarcoding: A case study of Parmotrema tinctorum. Mycobiology 50(1): 55-65. https://doi.org/10.1080/12298093.2022.2040112

45) Heo YM, Oh S-Y, Kim K, Han S-I, Kwon SL, Yoo Y, Kim D, Khim JS, Kang S, Lee H, Kim J-J (2021) Comparative genomics and transcriptomics depict marine algicolous Arthrinium species as endosymbionts that help regulate oxidative stress in brown algae. Frontiers in Marine Science 8: 753222. https://doi.org/10.3389/fmars.2021.753222

44) Kim W, Liu R, Woo S, Kang KB, Park H, Yu YH, Ha H-H, Oh S-Y, Yang JH, Kim H, Yun S-H, Hur J-S (2021) Linking a gene cluster to atranorin, a major cortical substance of lichens, through genetic dereplication and heterologous expression. mBio 12: e01111-21. https://doi.org/10.1128/mbio.01111-21

43) Yang JH, Oh S-Y, Kim W, Woo J-J, Kim H, Hur J-S (2021) Effect of isolation conditions on Diversity of endolichenic fungal communities from a foliose lichen, Parmotrema tinctorum. Journal of Fungi 7: 335. https://doi.org/10.3390/jof7050335

42) Oh S-Y, KH Park, P Baldrian, JJ Fong, HJ Kwon, S-Y Kim, YW Lim (2021) Fungal diversity living in the root and sporophore of the endemic Korean fern Mankyua chejuense. Fungal Ecology 50: 101038. https://doi.org/10.1016/j.funeco.2020.101038

41) Park KH*, Oh S-Y*, Yoo S, Fong JJ, Kim CS, Jo JW, Lim YW (2020) Influence of season and soil properties on fungal communities of neighboring climax forests (Carpinus cordata and Fraxinus rhynchophylla). Frontiers in Microbiology 11:572706. https://doi.org/10.3389/fmicb.2020.572706 (*: co-1st authors)

40) Park KH*, Oh S-Y*, Yoo S, Park MS, Fong JJ, Lim YW (2020) Successional change of the fungal microbiome pine seedling roots inoculated with Tricholoma matsutake. Frontiers in Microbiology 11: 574146. https://doi.org/10.3389/fmicb.2020.574146 (*: co-1st authors)

39) Noh P, Oh S-Y, Park S, Kwon T, Kim Y, Choe JC, Jeong G (2020) Association between host wing morphology polymorphism and Wolbachia infection in Vollenhovia emeryi. Ecology and Evolution 10(16): 8827–8837. https://doi.org/10.1002/ece3.6582

38) Lee H, Oh S-Y, Lee YM, Jang Y, Jang S, Kim C, Lim YW, Kim J-J (2020). Successional Variation in the Soil Microbial Community in Odaesan National Park, Korea. Sustainability 12(11): 4795. https://doi.org/10.3390/su12114795

37) Kim H, Lee C-R, Lee S-K, Oh S-Y, Kim W (2020). Biodiversity and community structure of mesozooplankton in the marine and coastal national park areas of Korea. Diversity 12(6): 233. https://doi.org/10.3390/d12060233

36) Woo J-J, Lücking R, Oh S-Y, Jeun Y-C, Hur J-S (2020). Two new foliicolous species of Strigula (Strigulaceae, Strigulales) in Korea offer insight in phorophyte-dependent variation of thallus morphology. Phytotaxa 443(1): 1-12. https://doi.org/10.11646/PHYTOTAXA.443.1.1

35) Oh S-Y, Yang JH, Woo J-J, Oh S-O, Hur J-S (2020). Diversity and distribution patterns of endolichenic fungi in Jeju Island, South Korea. Sustainability 12(9): 3769. https://doi.org/10.3390/su12093769

34) Park J-H, Pavlov IN, Kim M-J, Park MS, Oh S-Y, Park KH, Fong JJ, Lim YW (2020). Investigating wood decaying fungi diversity in Central Siberia, Russia using ITS sequence analysis and interaction with host trees. Sustainability 12(6): 2535. https://doi.org/10.3390/su12062535

33) Groffen J, Oh S-Y, Kwon S, Jang Y, Borzée A (2019). High mortality in Bufo gargarizans eggs associated with an undescribed Saprolegnia ferax strain in the Republic of Korea. Diseases of Aquatic Organisms 137(2): 89–99. https://doi.org/10.3354/dao03434

32) Lupala AS, Oh S-Y, Park MS, Kim T, Yoo J-S, Seelan JSS, Lim YW (2019). Co-occurrence patterns of wood-decaying fungi and ants in dead pines of South Korea. Journal of Asia-Pacific Entomology 22(4): 1154-1160. https://doi.org/10.1016/j.aspen.2019.10.009

31) Oh S-Y, Woo J-J, Hur J-S (2019). Distribution of foliicolous lichen Strigula and genetic structure of S. multiformis on Jeju Island, South Korea. Microorganisms 7(10): 430. https://doi.org/10.3390/microorganisms7100430

30) Park MS, Oh S-Y, Fong JJ, Houbraken J, Lim YW (2019). The diversity and ecological roles of Penicillium in intertidal zones. Scientific reports 9: 13540. https://doi.org/10.1038/s41598-019-49966-5

29) Oh S-Y, Park MS, Lim YW (2019). The influence of microfungi on the mycelial growth of ectomycorrhizal fungus Tricholoma matsutake. Microorganisms 7(6): 169. https://doi.org/10.3390/microorganisms7060169

28) Phookamsak R, Hyde KD, Jeewon R, …, Oh S-Y, et al. (104 authors) (2019). Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Diversity 95(1): 1-273. https://doi.org/10.1007/s13225-019-00421-w

27) Park MS, Jung YH, Oh S-Y, Kim MJ, Bang WY, Lim YW (2019). Cellulosic nanomaterial production via fermentation by Komagataeibacter sp. SFCB22-18 isolated from ripened persimmons. Journal of Microbiology and Biotechnology 29(4): 617-624. https://doi.org/10.4014/jmb.1801.01005

26) Park KH, Oh S-Y, Park MS, Kim M-S, Klopfenstein NB, Kim NK, Park JY, Kim J-J, Han S-K, Lee JK, Lim YW (2018). Re-evaluation of Armillaria and Desarmillaria in South Korea based on ITS/tef1 sequences and morphological characteristics. Forest Pathology 48(6): e12447. https://doi.org/10.1111/efp.12447

25) Oh S-Y, Park MS, Cho HJ, Lim YW (2018). Diversity and effect of Trichoderma isolated from the roots of Pinus densiflora within the fairy ring of pine mushroom (Tricholoma matsutake). PLoS ONE 13(11): e0205900. https://doi.org/10.1371/journal.pone.0205900

24) Cho HJ, Park MS, Lee H, Oh S-Y, Wilson AW, Mueller GM, Lim YW (2018). A systematic revision of the ectomycorrhizal genus Laccaria from Korea. Mycologia 110(5): 948-961. https://doi.org/10.1080/00275514.2018.1507542

23) Oh S-Y, Lim YW (2018). Effect of fairy ring bacteria on the growth of Tricholoma matsutake in vitro culture. Mycorrhiza 28(5): 411-419. https://doi.org/10.1007/s00572-018-0828-x

22) Oh S-Y, Lim YW (2018). Root-associated bacteria influencing mycelial growth of Tricholoma matsutake (pine mushroom). Journal of Microbiology 56(6): 399-407. https://doi.org/10.1007/s12275-018-7491-y

21) Park MS, Oh S-Y, Lee S, Eimes JA, Lim YW (2018). Fungal diversity and enzyme activity associated with sailfin sandfish egg masses in Korea. Fungal ecology 34: 1-9. https://doi.org/10.1016/j.funeco.2018.03.004

20) Oh S-Y, Cho HJ, Eimes JA, Han S-L, Kim CS, Lim YW (2018). Guild patterns of basidiomycetes community associated with Quercus mongolica in Mt. Jeombong, Republic of Korea. Mycobiology 46(1): 13-23. https://doi.org/10.1080/12298093.2018.1454009

19) Oh S-Y*, Kim M*, Eimes JA, Lim YW (2018). Effect of fruiting body bacteria on the growth of Tricholoma matsutake and its related molds. PLoS ONE 13(2): e0190948. https://doi.org/10.1371/journal.pone.0190948 (*: co-1st authors)

18) Park MS, Eimes JA, Oh SH, Seo HJ, Oh S-Y, Lee S, Park KH, Kwon HJ, Kim S-Y, Lim YW (2018). Diversity of fungi associated with roots of Calanthe orchid species in Korea. Journal of Microbiology 56(1): 49-55. https://doi.org/10.1007/s12275-018-7319-9

17) Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887

16) Jargalmaa S, Eimes JA, Park MS, Park JY, Oh S-Y, Lim YW (2017). Taxonomic evaluation of selected Ganoderma species and database sequence validation. PeerJ 5: e3596.

15) Oh S-Y, Fong JJ, Park MS, Lim YW (2016). Distinctive feature of microbial communities and bacterial functional profiles in Tricholoma matsutake dominant soil. PLoS ONE 11(12): e0168573. https://doi.org/10.1371/journal.pone.0168573

14) Park MS, Lee S, Oh S-Y, Cho GY, Lim YW (2016). Diversity and enzyme activity of Penicillium species associated with macroalgae in Jeju Island. Journal of Microbiology 54(10): 646-654. https://doi.org/10.1007/s12275-016-6324-0

13) Cho HJ, Park MS, Lee H, Oh S-Y, Jang Y, Fong JJ, Lim YW (2015). Four new species of Amanita in Inje County, Korea. Mycobiology 43(4): 408-414. https://doi.org/10.5941/MYCO.2015.43.4.408

12) Lee H, Park MS, Jung PE, Fong JJ, Oh S-Y, Verbeken A, Lim YW (2015). Lactarius cucurbitoides (Russulales, Basidiomycota), a new species from South Korea supported by molecular and morphological data. Phytotaxa 205(3): 168-176. http://doi.org/10.11646/phytotaxa.205.3.4

11) Park MS, Fong JJ, Oh S-Y, Houbraken J, Sohn JH, Hong SB, Lim YW (2015). Penicillium jejuense sp. nov., isolated from the marine environments of Jeju Island, Korea. Mycologia 107(1): 209-216. https://doi.org/10.3852/14-180

10) Jung PE, Fong JJ, Park MS, Oh S-Y, Kim C, Lim YW (2014). Sequence validation for the identification of the white-rot fungi Bjerkandera in public sequence databases. Journal of Microbiology and Biotechnology 24(10): 1301-1307. http://doi.org/10.4014/jmb.1404.04021

9) Park MS*, Oh S-Y*, Cho HJ, Fong JJ, Cheon WJ, Lim YW (2014). Trichoderma songyi sp. nov., a new species associated with the pine mushroom (Tricholoma matsutake). Antonie van Leeuwenhoek 106(4): 593-603. https://doi.org/10.1007/s10482-014-0230-4 (*: co-1st authors)

8) Park MS, Lee H, Oh S-Y, Jung PE, Seok SJ, Fong JJ, Lim YW (2014). Species delimitation of three species within the Russula subgenus Compacta in Korea: R. eccentrica, R. nigricans, and R. subnigricans. Journal of Microbiology 52(8): 631-638. https://doi.org/10.1007/s12275-014-4168-z

7) Park MS, Fong JJ, Oh S-Y, Kwon KK, Sohn JH, Lim YW (2014). Marine-derived Penicillium in Korea: diversity, enzyme activity, and antifungal properties. Antonie Van Leeuwenhoek 106(2): 331-345. https://doi.org/10.1007/s10482-014-0205-5

6) Park MS, Quan Y, Jung PE, Oh S-Y, Jang Y, Kim JJ, Lim YW (2014). Re-evaluation of the genus Antrodia (Polyporales, Basidiomycota) in Korea. Mycobiology 42(2): 114-119. https://doi.org/10.5941/MYCO.2014.42.2.114

5) Lee WD, Lee H, Fong JJ, Oh S-Y, Park MS, Quan Y, Jung PE, Lim YW (2014). A checklist of the basidiomycetous macrofungi and a record of five new species from Mt. Oseo in Korea. Mycobiology 42(2): 132-139. https://doi.org/10.5941/MYCO.2014.42.2.132

4) Oh S-Y, Fong JJ, Park MS, Chang L, Lim YW (2014). Identifying airborne fungi in Seoul, Korea using metagenomics. Journal of Microbiology 52(6): 465-472. https://doi.org/10.1007/s12275-014-3550-1

3) Kim TE*, Oh S-Y*, Chang E, Jang Y (2014). Host availability hypothesis: complex interactions with abiotic factors and predators may best explain population densities of cicada species. Animal Cells and Systems 18(2): 143-153. https://doi.org/10.1080/19768354.2014.906501 (*: co-1st authors)

2) Park MS, Fong JJ, Lee H, Oh S-Y, Jung PE, Min YJ, Seok SJ, Lim YW (2013). Delimitation of Russula subgenus Amoenula in Korea using three molecular markers. Mycobiology 41(4): 191-201. https://doi.org/10.5941/MYCO.2013.41.4.191

1) Lee HY*, Oh S-Y*, Jang Y (2012). Morphometrics of the final instar exuviae of five cicada species occurring in urban areas of central Korea. Journal of Asia-Pacific Entomology 15(4): 627-630. https://doi.org/10.1016/j.aspen.2012.07.004 (*: co-1st authors)

1) Kim CS, Kim N, Jo JW, Kwag Y-N, Han S-K, Oh S-H, Lim YW, Oh S-Y (2018). Guidelines for investigation of soil-fungal communities in forest. Korea National Arboretum. Pocheon, Republic of Korea (ISBN: 979-11-88720-28-6 [93480]).