Su Lab @ UAB - Publications

Su Lab @ UAB

Selected Publications

Full list @ Google Scholar

Methods in Enzymology (2025)

Induro-seq to analyze subcellular enrichment of small RNAs Link to the article

Monima Anam, Xisheng Liu, Taylor L Schanel, Christopher D Willey, Zhangli Su

BioRxiv (2025)

Comparative Landscape of Small RNAs in Tissue and Liquid Biopsies for Liver Transplant Outcomes Link to the article

Monima Anam, Christine Watkins, Grace Rucker, Katherine Marlow, Matthew Khalil, Murat Dogan, James Eason, Jason Vanatta, Corey Eymard, Cem Kuscu, Zhangli Su*, Canan Kuscu*

Journal of Molecular Biology (2025)

The secret life of N1-methyladenosine: a review on its regulatory functions Link to the article

Nhi Yen Tran Nguyen , Xisheng Liu, Anindya Dutta, Zhangli Su

Cell Reports (2025)

Regulation of epigenetics and chromosome structure by human ORC2 Link to the article

Zhangli Su*#, Mengxue Tian#, Etsuko Shibata, Yoshiyuki Shibata, Tianyi Yang, Zhenjia Wang, Fulai Jin, Chongzhi Zang*, Anindya Dutta*

Methods in Enzymology (2025)

TGIRT-seq to profile tRNA-derived fragments and associated RNA modifications Link to the article

Abigail Johnston, Monima Anam, Anindya Dutta, Zhangli Su

Elife (2024)

Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap Link to the article

Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta*, Chongzhi Zang*

iScience (2024)

sRNA-Effector: A tool to expedite discovery of small RNA regulators Link to the article

Briana Wilson, Fatemeh Esmaeili, Matthew Parsons, Wafa Salah, Zhangli Su*, Anindya Dutta*

PLOS Genetics (2023)

XRN2 suppresses aberrant entry of tRNA trailers into argonaute in humans and Arabidopsis Link to the article

Briana Wilson, Zhangli Su, Pankaj Kumar, Anindya Dutta

Nature Communications (2022)

TRMT6/61A-dependent base methylation of tRNA-derived fragments regulates gene-silencing activity and the unfolded protein response in bladder cancer Link to the article

Zhangli Su, Ida Monshaugen, Briana Wilson, Fengbin Wang, Arne Klungland, Rune Ougland*, Anindya Dutta*

NAR Genomics and Bioinformatics (2022)

tRForest: a novel random forest-based algorithm for tRNA-derived fragment target prediction Link to the article

Rohan Parikh, Briana Wilson, Laine Marrah, Zhangli Su, Shekhar Saha, Pankaj Kumar, Fenix Huang*, Anindya Dutta*

Front. Mol. Biosci. (2022)

Characterization of novel small non-coding RNAs and their modifications in bladder cancer using an updated small RNA-seq workflow Link to the article

Zhangli Su, Ida Monshaugen, Arne Klungland, Rune Ougland, Anindya Dutta

Science (2021)

De-stressing the T cells in need Link to the article

Zhangli Su, Anindya Dutta

Bio-protocol (2021)

ATAC-Seq-based Identification of Extrachromosomal Circular DNA in Mammalian Cells and Its Validation Using Inverse PCR and FISH Link to the article

Zhangli Su#, Shekhar Saha#, Teressa Paulsen, Pankaj Kumar, Anindya Dutta

Genome Medicine (2020)

The pan-cancer landscape of prognostic germline variants in 10,582 patients Link to the article

Ajay Chatrath, Roza Przanowska, Shashi Kiran, Zhangli Su, Shekhar Saha, Briana Wilson, Takaaki Tsunematsu, Ji-Hye Ahn, Kyung Yong Lee, Teressa Paulsen, Ewelina Sobierajska, Manjari Kiran, Xiwei Tang, Tianxi Li, Pankaj Kumar, Aakrosh Ratan, Anindya Dutta

Annual Review of Genetics (2020)

Non-canonical roles of tRNAs: tRNA fragments and beyond

Link to the article

Zhangli Su, Briana Wilson, Pankaj Kumar, Anindya Dutta

FASEB Journal (2020)

miR‐206 family is important for mitochondrial and muscle function, but not essential for myogenesis in vitro Link to the article

Roza K. Przanowska, Ewelina Sobierajska, Zhangli Su, Kate Jensen, Piotr Przanowski, Sarbajeet Nagdas, Jennifer A. Kashatus, David F. Kashatus, Sanchita Bhatnagar, John R. Lukens, Anindya Dutta

Science Advances (2020)

ATAC-seq identifies thousands of extrachromosomal circular DNA in cancer and cell lines

Link to the article

Pankaj Kumar, Shashi Kiran, Shekhar Saha, Zhangli Su, Teressa Paulsen, Ajay Chatrath, Yoshiyuki Shibata, Etsuko Shibata, Anindya Dutta

Journal of Biological Chemistry (2019)

Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3 mediated gene silencing Link to the article

Zhangli Su, Canan Kuscu, Asrar Malik, Etsuko Shibata, Anindya Dutta

PNAS (2019)

A packing for A-form DNA in an icosahedral virus Link to the article

Fengbin Wang, Ying Liu, Zhangli Su, Tomasz Osinski, Guilherme AP de Oliveira, James F Conway, Stefan Schouten, Mart Krupovic, David Prangishvili, Edward H Egelman

RNA (2018)

tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner Link to the article

Canan Kuscu, Pankaj Kumar, Manjari Kiran, Zhangli Su, Asrar Malik and Anindya Dutta

Nature Communications (2016)

Reader domain specificity and lysine demethylase-4 family function Link to the article

Zhangli Su, Fengbin Wang, Jin-Hee Lee, Kimberly E. Stephens, Romeo Papazyan, Ekaterina Voronina, Kimberly A. Krautkramer, Ana Raman, Jeremy J. Thorpe, Melissa D. Boersma, Vyacheslav I. Kuznetsov, Mitchell D. Miller, Sean D. Taverna, George N. Phillips Jr, John M. Denu