Publications

Prof. Amar Nath Gupta (Publication from 2020 onwards)

Oxidative stress via UVC irradiation on the structural rearrangement of Hen Egg White Lysozyme

Debdip Bramha, AN Gupta

Physical Chemistry Chemical Physics

Impedance Spectroscopy Unveiled the Surfactant-InducedUnfolding and Subsequent Refolding of Human Serum Albumin

Akshay Narayan Sarangi, and Amar Nath Gupta

ACS Langmuir 40 (36), 19022-19031

Biocompatible l-Cysteine-Capped MoS2 Nanoflowers for Antibacterial Applications: Mechanistic Insights

R Kaushik, S Nandi, M Mandal, AN Gupta

ACS Applied Nano Materials 7 (7), 7753-7765

Oxidative stress induced conformational changes of Human Serum Albumin

Debdip Bramha, AN Sarangi, Rupal Kaushik, AN Gupta

Physical Chemistry Chemical Physics 26, 8528-8538

Structural rearrangement of elastin under oxidative stress

Debdip Brahma, Tamal Sarkar, Rupal Kaushik, Akshay Narayan Sarangi, AN Gupta

Colloids and Surfaces B:Biointerfaces 233, 113663

L-cysteine capped Fe3O4 nanoparticles-functionalized conductive carbon yarn as a flexible electrochemical biosensor for detection of L-phenylalanine

Tamal Sarkar, Debdip Brahma, AN Gupta

Microchemical Journal 196, 109541

Highly fluorescent graphene quantum dots as “turn off–on” nanosensor for detecting toxic metal ions to organic pollutant

D Mandal, P De, S Khatun, AN Gupta, A Chandra

International Journal of Environmental Science and Technology

Plasmid DNA undergoes two compaction regimes under macromolecular crowding

S Khatun, A Singh, K Shikha, A Ganguly, AN Gupta

ACS Macro Letters 11 (2), 186-192

The catalytic core of Leishmania donovani RECQ helicase unwinds a wide spectrum of DNA substrates and is stimulated by replication protein A

K Shikha, G Sriram Bharath, S Mukhopadhyay, M Chakraborty, S Ghosh, ...

The FEBS Journal 289 (2), 394-416

Interactive patches over amyloid-beta oligomers mediate fractal self-assembly

A Singh, S Khatun, N Pawar, AN Gupta

Physical Review E 104 (6), 064404

Electric field-driven conformational changes in the elastin protein

D De, N Pawar, AN Gupta

Physical Chemistry Chemical Physics 23 (7), 4195-4204

Electrostatic and hydrophobic patches on Amyloid-beta oligomers govern their fractal self-assembly: Implication to proteins

A Singh, S Khatun, AN Gupta

arXiv preprint arXiv:2010.01340

Simultaneous detection of tyrosine and structure-specific intrinsic fluorescence in the fibrillation of Alzheimer's associated peptides

A Singh, Suparna Khatun and Amar Nath Gupta

ChemPhysChem

Hierarchical cage-frame type nanostructure of CeO2 for bio sensing applications: From glucose to protein detection

Debabrata Mandal, Sudipta Biswas, Ananya Chowdhury, Debajyoti De, Chandra ...

Nanotechnology

Unveiling the transition path region in the one-dimensional free energy landscape of proteins

D De, A Singh, AN Gupta

Chemical Physics Letters 750, 137498

Fibril growth captured by electrical properties of amyloid-beta and human islet amyloid polypeptide

P Awasthi, A Singh, S Khatun, AN Gupta, S Das

Physical Review E 101 (6), 062413

Glucose-induced structural changes and anomalous diffusion of elastin

D De, N Pawar, AN Gupta

Colloids and Surfaces B: Biointerfaces 188, 110776

Anisotropy versus fluctuations in fractal self-assembly of gold nanoparticles

A Singh, S Khatun, AN Gupta

Soft Matter 16, 7778-7788

Curcumin complexed with graphene derivative for breast cancer therapy

D De, CK Das, D Mandal, M Mandal, N Pawar, A Chandra, and AN Gupta

ACS Applied Bio Materials

Fractal self-assembly and aggregation of human amylin

S Khatun, A Singh, S Maji, TK Maiti, N Pawar, AN Gupta

Soft Matter 16, 3143-3153

Prof. Poorna Sekhar Burada (Publication from 2020 onwards)

Active chiral rotors: hydrodynamics and chemotaxis

R Maity, S Thakur, PS Burada

arXiv preprint arXiv:2501.16835

Role of obstacle softness in the diffusive behavior of active particles

A Gupta, PS Burada

The Journal of Chemical Physics 161 (21)

Chiral swimmer with a regular arbitrary active patch

S Biswas, PS Burada, GP Sekhar

arXiv preprint arXiv:2411.12252

Chemotactic swimming of two chiral squirmers

R Maity, PS Burada

Separation of interacting active particles in an asymmetric channel

A Gupta, PS Burada

Physical Review E 108 (3), 034605

Chemotaxis of two chiral squirmers

R Maity, PS Burada

Physics of Fluids 35 (4)

Magneto-Electric Supercapacitors

A Chowdhury, S Biswas, A Dhar, J Halder, D Mandal, PS Burada, ...

Handbook of Nanocomposite Supercapacitor Materials IV: Next-Generation …

Hydrodynamics of a slip-stick sphere with a non-axisymmetric patch

S Biswas, PS Burada, GPR Sekhar

Physics of Fluids 35, 033613

Near- and far-field hydrodynamic interaction of two chiral squirmers

R Maity, PS Burada

Physical Review E 105 (5), 054613

Unsteady chiral swimmer and its response to a chemical gradient

R Maity, PS Burada

Journal of Fluid Mechanics 940, A13

Diffusion of chiral active particles in a Poiseuille flow

N Khatri, PS Burada

Physical Review E 105 (2), 024604

Hydrodynamics of chiral squirmers

PS Burada, R Maity, F Jülicher

Physical Review E 105 (2), 024603

Stable Na-ion supercapacitor under non-ambient conditions using maricite-NaMnPO4 nanoparticles

A Chowdhury, S Biswas, A Dhar, PS Burada, A Chandra

Journal of Power Sources 516, 230679

High performance magnetic pseudocapacitors-Direct correlation between specific capacitance and diffusion coefficients

A Chowdhury, S Biswas, V Sharma, J Halder, A Dhar, B Sundaram, ...

Electrochimica Acta 397, 139252

Mass separation in an asymmetric channel

N Khatri, PS Burada

Physical Review E 104 (4), 044109

Effective medium model for a suspension of active swimmers

D Abyaya, PS Burada, GPR Sekhar

Physics of Fluids 33, 091906

Interacting Brownian particles exhibiting enhanced rectification in an asymmetric channel

N Khatri, PS Burada

Journal of Statistical Mechanics: Theory and Experiment 2021, 073202

Biomolecular response to hour-long ultralow field microwave radiation: An effective coarse-grained model simulation

AK Singh, PS Burada, A Roy

Physical Review E 103 (4), 042416

Hydrodynamics of an inertial active droplet

A Dhar, PS Burada, GPR Sekhar

Journal of Fluid Mechanics 904, A28

Theoretical model for magnetic supercapacitors—From the electrode material to electrolyte ion dependence

A Chowdhury, A Dhar, S Biswas, V Sharma, PS Burada, A Chandra

The Journal of Physical Chemistry C 124 (49), 26613-26624

Hydrodynamics of active particles confined in a periodically tapered channel

A Dhar, PS Burada, GP Sekhar

Physics of Fluids 32 (10)

Confined diffusion in a random Lorentz gas environment

N Khatri, PS Burada

Physical Review E 102 (1), 012137

Dynamics of a spherical droplet driven by active slip and stress

A Dhar, PS Burada, GPR Sekhar

International Journal of Multiphase Flow 127, 103274

Prof. Vishwanath Shukla (Publication from 2020 onwards)

Prethermalization in the PXP model under continuous quasiperiodic driving

P Dutta, S Choudhury, V Shukla

Physical Review B 111 (6), 064303

Nonequilibrium Continuous Transition in a Fast Rotating Turbulence

CS Lohani, SK Nayak, K Seshasayanan, V Shukla

arXiv preprint arXiv:2501.07079

Lyapunov spectra and fluctuation relations: Insights from the Galerkin-truncated Burgers equation

A Das, P Dutta, KL Panigrahi, V Shukla

arXiv preprint arXiv:2408.17310

Poles, shocks, and tygers: The time-reversible Burgers equation

A Das, P Dutta, V Shukla

Physical Review E 109 (6), 065108

Statistical properties of superfluid turbulence in 4He from the Hall-Vinen-Bekharevich-Khalatnikov model

AK Verma, S Shukla, V Shukla, A Basu, R Pandit

Physical Review E 108 (4), 045103

Equivalence of nonequilibrium ensembles: Two-dimensional turbulence with a dual cascade

M Maji, KS Eswaran, S Ghosh, K Seshasayanan, V Shukla

Physical Review E 108 (1), 015102

Inertial particles in superfluid turbulence: Coflow and counterflow

S Shukla, AK Verma, V Shukla, A Bhatnagar, R Pandit

Physics of Fluids 35 (1)

Machine learning of Ising criticality with spin-shuffling

P Basu, J Bhattacharya, DPS Jakka, C Mosomane, V Shukla

arXiv preprint arXiv:2203.04012

Nonequilibrium Bose-Einstein condensation

V Shukla, S Nazarenko

Physical Review A 105 (3), 033305

Magnus-force model for active particles trapped on superfluid vortices

A Griffin, V Shukla, ME Brachet, S Nazarenko

Physical Review A 101 (5), 053601

Prof. Pintu Patra (Publication from 2020 onwards)

Pair cross-correlation analysis for assessing protein co-localization

P Patra, C Sanchez, M Lanzer, US Schwarz 

Biophysical Journal

Collective migration reveals mechanical flexibility of malaria parasites

P Patra, K Beyer, A Jaiswal, A Battista, K Rohr, F Frischknecht, ...

Nature Physics 18 (5), 586-594

A particle-based computational model to analyse remodelling of the red blood cell cytoskeleton during malaria infections

J Jäger, P Patra, CP Sanchez, M Lanzer, US Schwarz

PLOS Computational Biology 18 (4), e1009509

Role of bacterial persistence in spatial population expansion

P Patra, S Klumpp

Physical Review E 104 (3), 034401

KAHRP dynamically relocalizes to remodeled actin junctions and associates with knob spirals in Plasmodium falciparum‐infected erythrocytes

CP Sanchez, P Patra, SYS Chang, C Karathanasis, L Hanebutte, N Kilian, ...

Molecular Microbiology 117 (2), 274-292

Prof. Raj Kumar Sadhu (Publication from 2020 onwards)

A minimal physical model for curvotaxis driven by curved protein complexes at the cell’s leading edge

RK Sadhu, M Luciano, W Xi, C Martinez-Torres, M Schröder, C Blum, ...

Proceedings of the National Academy of Sciences 121 (12), e2306818121

Mechanosensitivity of an ABC Membrane Transporter Revealed by Single Molecule FRET and Activity Measurement

A Damm, SJ Paik, RK Sadhu, A Di-Cicco, J Manzi, M Castellana, ...

bioRxiv, 2024.01. 24.577054

Experimental and theoretical model for the origin of coiling of cellular protrusions around fibers

RK Sadhu, C Hernandez-Padilla, YE Eisenbach, S Penič, L Zhang, ...

Nature communications 14 (1), 5612

A minimal cell model for lamellipodia-based cellular dynamics and migration

RK Sadhu, A Iglič, NS Gov

Journal of Cell Science 136 (14), jcs260744

Engulfment of particles by vesicles containing curved membrane proteins coupled with active cytoskeletal forces

RK Sadhu, SR Barger, S Penič, A Iglič, M Krendel, NC Gauthier, NS Gov

Advances in Biomembranes and Lipid Self-Assembly 37, 1-27

Modeling cellular shape changes in the presence of curved membrane proteins and active cytoskeletal forces

M Drab, RK Sadhu, Y Ravid, A Iglič, V Kralj-Iglič, NS Gov

Plasma Membrane Shaping, 415-429

Physical principles of cellular membrane shapes

NS Gov, V Kralj-Iglič, RK Sadhu, L Mesarec, A Iglič

Plasma Membrane Shaping, 393-413

A theoretical model of efficient phagocytosis driven by curved membrane proteins and active cytoskeleton forces

RK Sadhu, SR Barger, S Penič, A Iglič, M Krendel, NC Gauthier, NS Gov

Soft Matter 19 (1), 31-43

Modelling cellular spreading and emergence of motility in the presence of curved membrane proteins and active cytoskeleton forces (vol 136, 495, 2021)

RK Sadhu, S Penic, A Iglic, NS Gov

EUROPEAN PHYSICAL JOURNAL PLUS 137 (1)

Phase diagram of the repulsive Blume–Emery–Griffiths model in the presence of an external magnetic field on a complete graph

S Mukherjee, RK Sadhu

Journal of Statistical Mechanics: Theory and Experiment 2021 (4), 043209

Prof. Raj Kumar Manna (Publication from 2020 onwards)

Dry polymer model for a string of pushers: Nontrivial scaling of tumbling time with shear rate

SS Saju, RK Manna, PBS Kumar

Physical Review Research 6 (4), 043126

Multifunctionality of two-dimensional sheets actuated by chemical pumps and motors

OE Shklyaev, RK Manna, AC Balazs

MRS Bulletin, 1-10

Dynamical forces drive organ morphology changes during embryonic development

RK Manna, EM Retzlaff, AM Hinman, Y Lan, O Abdel-Razek, M Bates, ...

bioRxiv

Demixing in binary mixtures with differential diffusivity at high density

E McCarthy, RK Manna, O Damavandi, ML Manning

Physical Review Letters 132 (9), 098301

Autonomous Photothermally-driven Fluid Pumping and Particle Transport and Assembly

OE Shklyaev, RK Manna, A Laskar, JE Kauffman, BM Tansi, A Sen, ...

Chemically driven multimodal locomotion of active, flexible sheets

RK Manna, OE Shklyaev, AC Balazs

Langmuir 39 (2), 780-789

Modeling cell shape changes in the zebrafish embryo using a 3D vertex model

RK Manna, E Retzlaff, E Lawson-Keister, M Bates, Y Lan, H Hehnly, ...

APS March Meeting Abstracts 2023, Y11. 006

Computer modeling reveals modalities to actuate mutable, active matter

A Laskar, RK Manna, OE Shklyaev, AC Balazs

Nature Communications 13 (1), 2689

Solutal-buoyancy-driven intertwining and rotation of patterned elastic sheets

RK Manna, OE Shklyaev, HA Stone, AC Balazs

PNAS nexus 1 (2), pgac072

Harnessing the power of chemically active sheets in solution

RK Manna, A Laskar, OE Shklyaev, AC Balazs

Nature Reviews Physics 4 (2), 125-137

Self-generated convective flows enhance the rates of chemical reactions

RK Manna, K Gentile, OE Shklyaev, A Sen, AC Balazs

Langmuir 38 (4), 1432-1439

Colloidal Assembly and Separation under UV‐Induced Convective Flows and on Inclines

JE Kauffman, BM Tansi, C LaSalle, RK Manna, OE Shklyaev, AC Balazs, ...

ChemNanoMat 7 (7), 805-810

Chemical pumps and flexible sheets spontaneously form self-regulating oscillators in solution

RK Manna, OE Shklyaev, AC Balazs

Proceedings of the National Academy of Sciences 118 (12), e2022987118

Achieving independent control over surface and bulk fluid flows in microchambers

BM Tansi, RK Manna, OE Shklyaev, ML Peris, AC Balazs, A Sen

ACS Applied Materials & Interfaces 13 (5), 6870-6878

Chemically controlled shape-morphing of elastic sheets

RK Manna, OE Shklyaev, HA Stone, AC Balazs

Materials Horizons 7 (9), 2314-2327

Prof. Joydip Chaudhuri (Publication from 2020 onwards)

Fundamentals of the Oldroyd-B model revisited: Tensorial vs. vectorial theory

A Brunk, J Chaudhuri, M Lukacova-Medvidova, B Duenweg

arXiv preprint arXiv:2308.01326

Kelvin–Helmholtz instability augmented by von Kármán vortex shedding during an oil droplet impact on a water pool

J Chaudhuri, TK Mandal, D Bandyopadhyay

Langmuir 39 (2), 800-812

Electric Field-Induced “Tentillar” Bridging of a Droplet Twin

S Dutta#, J Chaudhuri#, PS Gooh Pattader, D Bandyopadhyay

Langmuir

Single and double toroid formation during oil droplet impact on an air–water interface at low Reynolds number

J Chaudhuri, TK Mandal, D Bandyopadhyay

Physics of Fluids 34, 012011

Influence of pre-impact shape of an oil droplet on the post-impact flow dynamics at air-water interface

J Chaudhuri, TK Mandal, D Bandyopadhyay

Soft Matter 18, 4102-4117

Magnetic-field-and thermal-radiation-induced entropy generation in a multiphase nonisothermal plane Poiseuille flow

J Chaudhuri

Physical Review E 104 (6), 065105

A coupled continuum-statistical model to predict interfacial deformation under an external field

J Chaudhuri, D Bandyopadhyay

Journal of Colloid and Interface Science 587, 864-875

Self-organized spreading of droplets to fluid toroids

S Kumar, A Ghosh, J Chaudhuri, S Timung, AK Dasmahapatra, ...

Journal of Colloid and Interface Science 578, 738-748

Microdroplet based disposable sensor patch for detection of α-amylase in human blood serum

M Bhattacharjee, S Middya, P Escobedo, J Chaudhuri, D Bandyopadhyay, ...

Biosensors and Bioelectronics 165, 112333