1. Park, S., Kim, M.J., Shin, J.H., Kim, E., Son, M., & Lee, S. (2025) Chronic PET-Microplastic Exposure: Disruption of Gut–Liver Homeostasis and Riak of Hepatic Steatosis. Advanced Science: in press
2. Hathurusinghe, S.H.K., Bashizi, T., Jeong, M., Kim, M.J., Pande, A., & Shin, J.H. (2025) Enhancing cucumber growth and disease resistance against Sclerotinia sclerotiorum by exogenous co-inoculation of Bacillus amyloliquefaciens KACC17029 and Salicylic acid. Plant Growth Regulation: 1-16
3. Park, T.H.†, Kim, M.J.†, Lee, Y.K., Lee, J.S., Lee, J., Park, H.Y., Yang, J.D., & Shin, J.H. (2025) Comparative Microbiome Analysis of Biofilm in Contracted Breast Capsules: A Cross-Sectional Study. BMC Microbiology 25(1): 379
4. Bashizi, T., Kim, M.J., Lim, K., Lee, G.D., Tagele, S.B., & Shin, J.H. (2025) Application of a Synthetic Microbial Community to Enhance Pepper Resistance Against Phytophthora capsica. Plants 14(11): 1625
5. Hyun, Y., Kim, M.J., & Shin, J.H. (2025) Complete Genome Sequence of Flavobacterium nitrogenifigens Strain KACC 18538 Chromosome, Isolated from the Rhizosphere of Switchgrass (Panicum virgatum). Microbiology and Biotechnology Letters 53(1): 112-114
6. Bashizi, T., Kim, M.J., Lee, G.D., & Shin, J.H. (2025) Whole Genome Sequence of Flavobacterium anhuiense Strain T4, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.). Microbiology and Biotechnology Letters 53(1): 108-111
7. Hwang, H.J.†, Kim, M.J.†, & Shin, J.H. (2024) Complete Genome Sequence of Priestia aryabhattai KNU10, a Stress-Tolerant Strain with Plant Growth-Promoting Rhizobacteria (PGPR) Activity. Microbiology and Biotechnology Letters 52(4): 487-489
8. Kim, M.J.†, Han, S.Y.†, Kang, D. Shin, J.H., & Lee, S. (2024) Functional Insights into Microbial Communities of Korean Traditional Rice Wine (Makgeolli) during Fermentation. LWT-Food Science and Technology, 116826
9. Lee, G.D. Ibal, J.C., Park, T.H., Kim, M.J., Choi, S.D., & Shin, J.H. (2024) Whole-genome sequences of Beauveria bassiana KNU-101 using the hybrid assembly approach. Microbiology Resource Announcements, e00681-23
10. Kim, M.J., Jung, D.R., Lee, J.M., Kim, I., Son, H.W., Kim, E.S., & Shin, J.H. (2024) Microbial Dysbiosis Index for Assessing Colitis Status in Mouse Models: A Systematic Review and Meta-Analysis. iScience, 108657
11. Kim, M.J., Kang, D., Lee, G.D., Kim, K., Kim, J., Shin, J.H. & Lee, S. (2023) Interplays between Cyanobacterial Blooms and Antibiotic Resistance Genes. Environment International, 108268
12. Sliti, A., Kim, M.J., Lee, G.D., Park, Y.J., & Shin, J.H. (2023) Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max). Microbiology and Biotechnology Letters 51(3): 296-299
13. Lee, G.D., Park, T.H., Kim, M.J., & Shin, J.H. (2023) Complete genome sequence of Bacillus velezensis 2F-NA isolation from the soil of a livestock farmhouse. The Microbiological Society of Korea 59(3), 214-216
14. Jo, J.Y.†, Lee, G.D.†, Ahmad, S., Son, H.W., Kim, M.J., Sliti, A., Lee, S., Kim, K., Lee, S.E., & Shin, J.H. (2023) The Alteration of the Gut Microbiome during Ramadan Offers a Novel Perspective on Ramadan Fasting: A pilot study. Microorganisms 11(8), 2106
15. Kim, J.†, Lee, G.D. †, Han, S., Kim, M.J., Shin, J.H., & Lee, S. (2023) Microbial Communities in Aerosol Generated from Cyanobacterial Bloom-affected Freshwater Bodies: an Exploratory Study in Nakdong River, South Korea. Frontiers in Microbiology, 1203317
16. Bashizi, T., Kim, M.J., Lee, G.D., Tagele, S.B., & Shin, J.H. (2023) Whole-Genome Sequence of Pseudomonas frederiksbergensis Strain A6, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.) Microbiology Resource Announcements, e00229-23
17. Park, C.E., Cho, B.J., Kim, M.J., Kim, M.C., Park, M.K., Son, J.I., Park, H.C., & Shin, J.H. (2023) Ecoinformatic Analysis of the Gut Ecological Diversity of Wild and Captive Long-Tailed Gorals Using Improved ITS2 Region Primers to Support Their Conservation. Microorganisms 11(6), 1368
18. Jeong, M., Tagele, S.B., Kim, M.J., Ko, S.H., Kim, K.S., Koh, J.G., Jung, D.R., Jo, Y.J., Jung, Y.G., Park, Y.J., Kim, M.S., Lim, K., & Shin, J.H. (2023) The Death of Korean Fir (Abies koreana) Affects Soil Symbiotic Fungal Microbiome: Preliminary Findings. Frontiers in Forests and Global Change, 5, 289
19. Jung, D.R.†, Yoo, H.Y.†, Kim, M.J., Singh, V., Park, S.H., Jeong, M., Park, B.J., & Shin, J.H. (2022) Comparative Analysis of Scalp and Gut Microbiome in Androgenetic Alopecia: A Korean Cross-sectional Study. Frontiers in Microbiology, 4921
20. Kim, M.J., Park, T.H., Jung, D.R., Lee, G.D., & Shin, J.H. (2022) Complete Genome sequence of Bacillus inaquosorum 1HC-NA assembled from the Oxford Nanopore sequencing data. The Microbiological Society of Korea, 58(3), 194-196
21. Kim, M.J., Park, T.H., Jeong, M., Lee, G.D., Jung, D.R., & Shin, J.H. (2022) Complete Genome Sequence of Bacillus amyloliquefaciens KNU-28 Isolated from Peach Leaves (Prunus Persica [L.] Batsch). Microbiology Resource Announcements, e00934-22
22. Lee, G.D., Kim, M.J., & Shin, J.H. (2021) Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727T. Data in brief, 38, 107271
23. Park, C.E., Cho, B.J., Kim, M.J., Park, H.C., & Shin, J.H. (2021) Geographical Relationships between Long-Tailed Goral (Naemorhedus caudatus) Populations Based on Gut Microbiome Analysis. Microorganisms, 9(9), 2002
24. Kim, M.J., Tagele, S.B., Jo, H.W., Kim, M.C., Jung, Y.G., Park, Y.J., So, J.H., Kim, H.J., Kim, H.J., Lee, D.G., Kang, S., & Shin, J.H. (2021) Effect of a bioconverted product of Lotus corniculatus seed on the axillary microbiome and body odor. Scientific Reports, 11(1), 1-14
25. Hwang, T.K., Park, Y.J., Kim, M.J., Lee, G.D., Kim, R.H., Lee, T.I., Park, S.K., & Shin, J.H. (2021) Whole-genome sequence of Bacillus aryabhattai strain GW320, a potential plant growth-promoting rhizobacterium from Cucumis sativus L. rhizospheric soil. The Microbiological Society of Korea, 57(1), 62-65
26. Hwang, Y.J., Son, J.S., Lee, S.Y., Kim, M.J., Park, J.M., Shin, J.H., & Ghim, S.Y. (2021) Adhaeribacter radiodurans sp. nov., isolated from the rhizospheric soil of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea. International Journal of Systematic and Evolutionary Microbiology 71(1), 004612
27. Lee, H.†, Jo, E.†, Kim, J., Moon, K., Kim, M.J., Shin, J.H., & Cha, J. (2021) Complete Genome Sequence and Antimicrobial Activities of Bacillus velezensis MV2 Isolated from a Malva verticillate Leaf. Microbiology and Biotechnology Letters, 49(1), 111-119
28. Park, M.K., Park, Y.J., Kim, M.J., Kim, M.C., Ibal, J.C., Kang, G.U., Lee, G.D., Tagele, S.B., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2020) Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 390-393
29. Kim, M.J., Park, Y.J., Park, M.K., Park, C.E., Jo, Y.J., Tagele, S.B., & Shin, J.H. (2020) Complete genome sequence of Labrys sp. KNU-23 isolated from ginseng soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 410-412
30. Jo, H.W., Tagele, S.B., Pham, H.Q., Kim, M.C., Choi, S.D., Kim, M.J., Park, Y.J,, Ibal, J.C., Park, G.S., & Shin, J.H. (2020) Response of soil bacterial community and pepper plant growth to application of Bacillus thuringiensis KNU-07. Agronomy 10(4), 551
31. Park, C.E., Park, Y.J., Kim, M.C., Park, M.K., Jung, Y.G., Choi, S.D., Jo, Y.J., Kang, G.U., Kim, M.J., Li, Q.X., Yoza, B.A., Kim, K.H., Park, H.C., & Shin, J.H. (2020) The first complete mitochondrial genome sequence of the korean endemic catfish Silurus microdorsalis (Actinopteri, Siluriformes, Siluridae). Mitochondrial DNA Part B, 5(1), 131-132
32. Park, M.K., Park, Y.J., Kim, M.C., Kang G.U., Kim, M.J., Jo, Y.J., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2019) Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502771 isolated from shooting range soil in Republic of Korea. The Microbiological Society of Korea, 55(4), 419-421