Embedded Files
1. Lee, J.M.†, Kim, M.J.†, Lee, H.†, Hyun, Y., Nam S.W., Jeon, D.G., Shin, J.H., & Kim, E.S. (2026) Maternal gut microbial legacy shapes intestinal health and susceptibility of offspring to colitis. npj Biofilms and Microbiomes: in press
2. Hathurusinghe, S.H.K., Joshi, A., Kim, M.J., & Shin, J.H. (2026) Mechanistic insights into perlite-alginate encapsulation of bio fertilizer formulant: impacts on rhizosphere microbiome and cucumber growth. Plant and Soil: 1-15
3. Park, S., Kim, M.J., Shin, J.H., Son, M., & Lee, S. (2026) Chronic PET-Microplastic Exposure: Disruption of Gut-Liver Homeostasis and Risk of Hepatic Steatosis. Advanced Science 13(1): e12030
4. Jeong, M., Kim, M.J., & Shin, J.H. (2025) Complete genome sequence of Bacillus licheniformis KNU11, isolated from soil. Microbiology Resource Announcements 14(12): e01011-24
5. Andargie Y.E., Lee, G.D., Kim, M.J., Fentie, E.G., Jeong, M., Tagele, S.B., Lim, K., Azizoglu, U. & Shin, J.H. (2025) Soil microbial load modulation improves plant-microbe interactions and bioinoculant efficacy in pathogen-stressed soils. Frontiers in Plant Science 16: 1712997
6. Hathurusinghe, S.H.K., Bashizi, T., Jeong, M., Kim, M.J., Pande, A., & Shin, J.H. (2025) Enhancing cucumber growth and disease resistance against Sclerotinia sclerotiorum by exogenous co-inoculation of Bacillus amyloliquefaciens KACC17029 and Salicylic acid. Plant Growth Regulation: 1-16
7. Park, T.H.†, Kim, M.J.†, Lee, Y.K., Lee, J.S., Lee, J., Park, H.Y., Yang, J.D., & Shin, J.H. (2025) Comparative Microbiome Analysis of Biofilm in Contracted Breast Capsules: A Cross-Sectional Study. BMC Microbiology 25(1): 379
8. Bashizi, T., Kim, M.J., Lim, K., Lee, G.D., Tagele, S.B., & Shin, J.H. (2025) Application of a Synthetic Microbial Community to Enhance Pepper Resistance Against Phytophthora capsica. Plants 14(11): 1625
9. Hyun, Y., Kim, M.J., & Shin, J.H. (2025) Complete Genome Sequence of Flavobacterium nitrogenifigens Strain KACC 18538 Chromosome, Isolated from the Rhizosphere of Switchgrass (Panicum virgatum). Microbiology and Biotechnology Letters 53(1): 112-114
10. Bashizi, T., Kim, M.J., Lee, G.D., & Shin, J.H. (2025) Whole Genome Sequence of Flavobacterium anhuiense Strain T4, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.). Microbiology and Biotechnology Letters 53(1): 108-111
11. Hwang, H.J.†, Kim, M.J.†, & Shin, J.H. (2024) Complete Genome Sequence of Priestia aryabhattai KNU10, a Stress-Tolerant Strain with Plant Growth-Promoting Rhizobacteria (PGPR) Activity. Microbiology and Biotechnology Letters 52(4): 487-489
12. Kim, M.J.†, Han, S.Y.†, Kang, D. Shin, J.H., & Lee, S. (2024) Functional Insights into Microbial Communities of Korean Traditional Rice Wine (Makgeolli) during Fermentation. LWT-Food Science and Technology, 116826
13. Lee, G.D. Ibal, J.C., Park, T.H., Kim, M.J., Choi, S.D., & Shin, J.H. (2024) Whole-genome sequences of Beauveria bassiana KNU-101 using the hybrid assembly approach. Microbiology Resource Announcements, e00681-23
14. Kim, M.J., Jung, D.R., Lee, J.M., Kim, I., Son, H.W., Kim, E.S., & Shin, J.H. (2024) Microbial Dysbiosis Index for Assessing Colitis Status in Mouse Models: A Systematic Review and Meta-Analysis. iScience, 108657
15. Kim, M.J., Kang, D., Lee, G.D., Kim, K., Kim, J., Shin, J.H. & Lee, S. (2023) Interplays between Cyanobacterial Blooms and Antibiotic Resistance Genes. Environment International, 108268
16. Sliti, A., Kim, M.J., Lee, G.D., Park, Y.J., & Shin, J.H. (2023) Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max). Microbiology and Biotechnology Letters 51(3): 296-299
17. Lee, G.D., Park, T.H., Kim, M.J., & Shin, J.H. (2023) Complete genome sequence of Bacillus velezensis 2F-NA isolation from the soil of a livestock farmhouse. The Microbiological Society of Korea 59(3), 214-216
18. Jo, J.Y.†, Lee, G.D.†, Ahmad, S., Son, H.W., Kim, M.J., Sliti, A., Lee, S., Kim, K., Lee, S.E., & Shin, J.H. (2023) The Alteration of the Gut Microbiome during Ramadan Offers a Novel Perspective on Ramadan Fasting: A pilot study. Microorganisms 11(8), 2106
19. Kim, J.†, Lee, G.D. †, Han, S., Kim, M.J., Shin, J.H., & Lee, S. (2023) Microbial Communities in Aerosol Generated from Cyanobacterial Bloom-affected Freshwater Bodies: an Exploratory Study in Nakdong River, South Korea. Frontiers in Microbiology, 1203317
20. Bashizi, T., Kim, M.J., Lee, G.D., Tagele, S.B., & Shin, J.H. (2023) Whole-Genome Sequence of Pseudomonas frederiksbergensis Strain A6, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.) Microbiology Resource Announcements, e00229-23
21. Park, C.E., Cho, B.J., Kim, M.J., Kim, M.C., Park, M.K., Son, J.I., Park, H.C., & Shin, J.H. (2023) Ecoinformatic Analysis of the Gut Ecological Diversity of Wild and Captive Long-Tailed Gorals Using Improved ITS2 Region Primers to Support Their Conservation. Microorganisms 11(6), 1368
22. Jeong, M., Tagele, S.B., Kim, M.J., Ko, S.H., Kim, K.S., Koh, J.G., Jung, D.R., Jo, Y.J., Jung, Y.G., Park, Y.J., Kim, M.S., Lim, K., & Shin, J.H. (2023) The Death of Korean Fir (Abies koreana) Affects Soil Symbiotic Fungal Microbiome: Preliminary Findings. Frontiers in Forests and Global Change, 5, 289
23. Jung, D.R.†, Yoo, H.Y.†, Kim, M.J., Singh, V., Park, S.H., Jeong, M., Park, B.J., & Shin, J.H. (2022) Comparative Analysis of Scalp and Gut Microbiome in Androgenetic Alopecia: A Korean Cross-sectional Study. Frontiers in Microbiology, 4921
24. Kim, M.J., Park, T.H., Jung, D.R., Lee, G.D., & Shin, J.H. (2022) Complete Genome sequence of Bacillus inaquosorum 1HC-NA assembled from the Oxford Nanopore sequencing data. The Microbiological Society of Korea, 58(3), 194-196
25. Kim, M.J., Park, T.H., Jeong, M., Lee, G.D., Jung, D.R., & Shin, J.H. (2022) Complete Genome Sequence of Bacillus amyloliquefaciens KNU-28 Isolated from Peach Leaves (Prunus Persica [L.] Batsch). Microbiology Resource Announcements, e00934-22
26. Lee, G.D., Kim, M.J., & Shin, J.H. (2021) Data on complete genome sequence and annotation of Paenibacillus sonchi LMG 24727T. Data in brief, 38, 107271
27. Park, C.E., Cho, B.J., Kim, M.J., Park, H.C., & Shin, J.H. (2021) Geographical Relationships between Long-Tailed Goral (Naemorhedus caudatus) Populations Based on Gut Microbiome Analysis. Microorganisms, 9(9), 2002
28. Kim, M.J., Tagele, S.B., Jo, H.W., Kim, M.C., Jung, Y.G., Park, Y.J., So, J.H., Kim, H.J., Kim, H.J., Lee, D.G., Kang, S., & Shin, J.H. (2021) Effect of a bioconverted product of Lotus corniculatus seed on the axillary microbiome and body odor. Scientific Reports, 11(1), 1-14
29. Hwang, T.K., Park, Y.J., Kim, M.J., Lee, G.D., Kim, R.H., Lee, T.I., Park, S.K., & Shin, J.H. (2021) Whole-genome sequence of Bacillus aryabhattai strain GW320, a potential plant growth-promoting rhizobacterium from Cucumis sativus L. rhizospheric soil. The Microbiological Society of Korea, 57(1), 62-65
30. Hwang, Y.J., Son, J.S., Lee, S.Y., Kim, M.J., Park, J.M., Shin, J.H., & Ghim, S.Y. (2021) Adhaeribacter radiodurans sp. nov., isolated from the rhizospheric soil of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea. International Journal of Systematic and Evolutionary Microbiology 71(1), 004612
31. Lee, H.†, Jo, E.†, Kim, J., Moon, K., Kim, M.J., Shin, J.H., & Cha, J. (2021) Complete Genome Sequence and Antimicrobial Activities of Bacillus velezensis MV2 Isolated from a Malva verticillate Leaf. Microbiology and Biotechnology Letters, 49(1), 111-119
32. Park, M.K., Park, Y.J., Kim, M.J., Kim, M.C., Ibal, J.C., Kang, G.U., Lee, G.D., Tagele, S.B., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2020) Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 390-393
33. Kim, M.J., Park, Y.J., Park, M.K., Park, C.E., Jo, Y.J., Tagele, S.B., & Shin, J.H. (2020) Complete genome sequence of Labrys sp. KNU-23 isolated from ginseng soil in the Republic of Korea. The Microbiological Society of Korea 56(4), 410-412
34. Jo, H.W., Tagele, S.B., Pham, H.Q., Kim, M.C., Choi, S.D., Kim, M.J., Park, Y.J,, Ibal, J.C., Park, G.S., & Shin, J.H. (2020) Response of soil bacterial community and pepper plant growth to application of Bacillus thuringiensis KNU-07. Agronomy 10(4), 551
35. Park, C.E., Park, Y.J., Kim, M.C., Park, M.K., Jung, Y.G., Choi, S.D., Jo, Y.J., Kang, G.U., Kim, M.J., Li, Q.X., Yoza, B.A., Kim, K.H., Park, H.C., & Shin, J.H. (2020) The first complete mitochondrial genome sequence of the korean endemic catfish Silurus microdorsalis (Actinopteri, Siluriformes, Siluridae). Mitochondrial DNA Part B, 5(1), 131-132
36. Park, M.K., Park, Y.J., Kim, M.C., Kang G.U., Kim, M.J., Jo, Y.J., Kwon, H.J., Kang, M.S., Kim, M.H., Kim, S.Y., & Shin, J.H. (2019) Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502771 isolated from shooting range soil in Republic of Korea. The Microbiological Society of Korea, 55(4), 419-421
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