R codes

Analysis of Composition of Microbiomes (ANCOM) is a methodology to detect differentially abundant taxa in microbial surveys. The code from the original article (Mandal S, Treuren WV, White RA, Eggesbø M, Knight R & Peddada SD. (2015) Analysis of Composition of Microbiomes (ANCOM): A novel method for studying microbial composition, Microbial Ecology in Health and Diseases; 26: 27663.) has now been updated to include repeated measures, covariates and longitudinal analysis. The code and documentation can be downloaded from this page.

Code for ANCOM 2.0 and its documentation can be downloaded from the Git repository: ANCOM git repository