Conference Presentations
Publication
Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, et al. Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature Biotechnology. 2021;39(9):1151-1160 / PMID:34504347 / SharedIt Link
Xiao W, Ren L, Chen Z, Fang LT, Zhao Y, Lack J, Guan M, Zhu B, Jaeger E, Kerrigan L, et al. Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing. Nature Biotechnology. 2021;39(9):1141-1150 / PMID:34504346 / SharedIt Link
Chen W, Zhao Y, Chen X, Yang Z, Xu X, Bi Y, Chen V, Li J, Choi H, Ernest B, et al. A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples. Nature Biotechnology. 2021;39(9):1103-1114 / PMID:33349700 / SharedIt Link
Sahraeian SME, Fang LT, Karagiannis K, Moos M, Smith S, Santana-Quintero L, Xiao C, Colgan M, Hong H, Mohiyuddin M, et al. Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample. Genome Biology. 2022;23(1):12 / PMID:34996510
Zhao Y, Fang LT, Shen T, Choudhari S, Talsania K, Chen X, Shetty J, Kriga Y, Tran B, Zhu B, et al. Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study. Scientific Data. 2021;8(1):296 / PMID:34753956
Chen X, Yang Z, Chen W, Zhao Y, Farmer A, Tran B, Furtak V, Moos M, Xiao W, Wang C. A multi-center cross-platform single-cell RNA sequencing reference dataset. Scientific Data. 2021;8(1):39 / PMID:33531477
Xiao C, Chen Z, Chen W, Padilla C, Colgan M, Wu W, Fang LT, Liu T, Yang Y, Schneider V, et al. Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples. Genome Biology. 2022;23(1):237 / PMID:36352452
Talsania K, Shen T, Chen X, Jaeger E, Li Z, Chen Z, Chen W, Tran B, Kusko R, Wang L, et al. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies. Genome Biology. 2022;23(1):255 / PMID:36514120