Research
Research Area: Virology
Sub-topic:
Virus Dynamics
1. Hepatitis B virus infection dynamics
2. Single-cell infection dynamics
3. Antiviral therapy of chronic HBV infection
4. Roles of pseudovirus or sub-viral particles
Fractional Derivative
1. Application of fractional derivative in virus dynamics
Machine Learning
1. Application of PINNs in Mathematical Biology(physics-infromed neural network)
Exact solution of some special type partial differential equations
Become reviewer of the journal "Exploration of Digestive Diseases ", May, 2024.
Become reviewer of the journal "The European Physical Journal Plus", May, 2024.
Selected BioRender Community Template Peer Reviewer, April, 2024.
Accepted one article in the journal 'Nonlinear Dynamics', April, 2024.
Publications
Accepted
Click the drop-down arrow beside each publication to read a short description.
Sutradhar, R., & Dalal, D. C.: Cytoplasmic re-cycling rcDNA-containing Capsids Enhances HBV Infection, Nonliner Dynamics, 2024 (Available here)
Hepatitis B virus (HBV) infection is a deadly liver disease. The main aim of this work is to explore the role of cytoplasmic recycling of rcDNA-containing capsids in the hepatitis B virus (HBV) infection. To this purpose, considering the recycling of capsids, a noval mathematical model is proposed in order to understand the dynamics of this viral infection in a better way. Through a rigorous comparison with the experimental data obtained from two chimpanzees, the proposed model exhibits a robust alignment with the dynamics of infection. The effects of three parameters (recycling rate, virus production rate, and volume fraction of newly produced capsids) are examined, revealing an interesting observation: the inclusion of recycling reverses the influence of both virus production rate and the volume fraction of newly produced capsids in infection. A comprehensive global sensitivity analysis is conducted to identify the most positively as well as negatively sensitive parameters for each model compartment. In conclusion, this study underscores that the accumulation of rcDNA-containing capsids within the infected hepatocyte is a key factor contributing to the exacerbation of the disease. In addition, another major finding of our study is that due to recycling of capsids, the number of released viruses increases in spite of low virus production rate. In other words, the recycling of capsids acts as a positive feedback loop in the viral infection.
2. Sutradhar, R., & Dalal, D. C. Fractional‐order models of hepatitis B virus infection with recycling effects of capsids. Mathematical Methods in the Applied Sciences 46.14 (2023): 15599-15625.
Hepatitis B virus (HBV) infection is a major public health concern throughout the world. It can be treated effectively through proper medication and vaccination, although it is very difficult to cure, especially in people who have had the chronic infection. So, it is necessary to pay proper attention for its eradication. In this study, two nonlinear fractional-order HBV infection models with recycling effects of capsids are presented via the Caputo derivative. Each model contains four compartments, namely, susceptible hepatocytes, infected hepatocytes, HBV capsids, and viruses. In the first model, the order of fractional derivatives is equal for each compartment, whereas, in the second model, the order is incommensurate. The existence and uniqueness of solutions for both models are discussed separately. The parameters are estimated in order to vali date the proposed model with experimental data obtained from a chimpanzee. Stability analyses are carried out for both models theoretically. The models are solved numerically using the predictor–corrector Adams–Bashforthm–Moulton method (for commensurate order) and implicit product integration of trape zoidal type method (for incommensurate order) with various choices of frac tional orders and initial conditions. All the results are presented graphically. Interestingly, the results reveal the importance of fractional-order derivatives in capturing the dynamics of HBV transmission in the host. It is also noticed that with the decrease in the order of fractional derivative, the peak level of infection decreases, but the disease takes a long time to be cured.
3. Sutradhar, R., & Dalal, D. C.: Combination Therapy for Chronic Hepatitis B Using Capsid Recycling Inhibitor. in Nonlinear Dynamics and Applications. Springer Proceedings in Complexity, 2024.
In this paper, we investigate the dynamics of hepatitis B virus infection taking into account the implementation of combination therapy through mathe matical modeling. This model is established considering the interplay between uninfected cells, infected cells, capsids, and viruses. Three drugs are considered for specific roles: (i) pegylated interferon (PEG-IFN) for immune modulation, (ii) lamivudine (LMV) as a reverse-transcriptase inhibitor, and (iii) entecavir (ETV) to block capsid recycling. Using these drugs, three combination therapies are introduced, specifically CT: PEG-IFN+LMV, CT: PEG-IFN+ETV, and CT: PEG IFN+LMV+ETV. As a result, when LMV is used in combination therapy with PEG-IFN and ETV, the impacts of ETV become insignificant. In conclusion, if the appropriate drug effectively inhibits reverse-transcription, there’s no need for an additional inhibitor to block capsid recycling.
Communicated
Sutradhar, R., & Dalal, D. C.: Infection with Hepatitis B Virus: Predicting the Future Through an Intracellular Dynamic Model.
Sutradhar, R., & Dalal, D. C.: On Existence of Traveling wave of an HBV infection dynamics model: A Novel Approach.
Sutradhar, R., & Dalal, D. C.: Mitosis Cell Division of Infected Hepatocytes in HBV Infection.
Sutradhar, R., Sadhu, G. & Dalal, D. C.: The Roles of Sub-viral Particles in the Persistence of HBV Infection.
In preparation
Sutradhar, R., Sadhu, G. & Dalal, D. C.: How Does Hepatitis B Virus Enhance Hepatocellular Carcinoma?
Sutradhar, R., & Dalal, D. C.: The Study of HBV Infection by Considering Multiple Points of Infection in
Triangular Domain.
Sutradhar, R., & Dalal, D. C.: Exploration of Hepatitis B Virus Infection Dynamics within a Triangular Domain Reflecting Liver Morphology.
Sutradhar, R.: The Effects of Cytokine Inflammation in Viral Infection.
Sutradhar, R.: The Identifiability Analysis of HBV Infection Dynamics Model.
Sutradhar, R.: The Prediction of HBV Infection Using Physics-Infromed Neural Network.
Welcome for collaboration
Conferences/Workshops/Seminars/Programs
Third International Conference on Applications of Mathematics to Nonlinear Sciences (AMNS-2023) May 25-28, 2023, Pokhara, Nepal.
Research and Industrial Conclave 2023, Students Academic Board, Indian Institute of Technology Guwahati, Guwahati, India, May 2023.
Five Day International Workshop on " Application of Mathematical Modelling in Engineering and Sciences" , April 18-22, 2023, Department of Mathematics, SKIT, Jaipur, Rajasthan.
Lecture Series on “Nonlinear Dynamics and Applications” organized by the Department of Mathematics, Indian Institute of Technology Indore, INDIA, during 13-16th February, 2023.
3rd International Workshop on Numerical and Analytical Techniques in Engineering Problems (IWNATEP-2023) organized by the Dept. of Mathematics, SRMIST, Kuttankulathur, Tamilnadu, India, from January 30-February 1, 2023.
2nd Lecture Series on Mathematical Modeling in Biology 15-16 October 2022, Bangladesh Society for Mathematical Biology (BSMB).
International FDP on Mathematical Modelling of Biosystems with Special Focus on Epidemiology 21st – 27th August 2022, Mizoram University.
38th Annual Conference of Ramanujan Mathematical Society, 22nd - 24th December 2023, Department of Mathematics, IIT Guwahati.
International Conference on the History of Mathematics (ICHM), organized by Centre for Indian Knowledge Systems, IIT Guwahati and NIT Arunachal Pradesh, January 19-21, 2024.
2nd International Conference on Nonlinear Dynamics and Applications, organized by the Department of Mathematics Sikkim Manipal Institute of Technology, February 21-23, 2024.
Collaboration Network
Interested in working with Artificial Intelligence (Machine Learning) in the field of Mathematical Biology.
Reviewers:
BioRender Community Template Peer Reviewer.
Reviewer of the journal 'The European Physical Journal Plus'.
Reviewer of the journal 'Exploration of Digestive Diseases'.
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