The double-helix structure of DNA was identified in 1953 by James Watson and Francis Crick. DNA strands are composed of long chains of molecules known as nucleotides.
Each nucleotide consists of three chemical components: a phosphate group, a five-carbon sugar, and one of the nitrogenous bases—adenine, guanine, cytosine, thymine, or uracil.
A gene is the fundamental unit of heredity. It is a specific sequence of nucleotides that carries the information required to produce functional biological molecules and, more broadly, to support the processes of life.
Genes contained in chromosomes
Genes are organized into chromosomes, which are located within the cell nucleus. Each chromosome contains hundreds or even thousands of genes.
Human cells typically contain 23 pairs of chromosomes, for a total of 46. Of these, 22 pairs are autosomes, while the remaining pair consists of the sex chromosomes. Females have two X chromosomes, whereas males have one X and one Y chromosome.
From the early 2000s onward, researchers developed a range of synthetic nucleic acid analogues collectively known as XNAs, or xeno nucleic acids.
Like DNA and RNA, XNAs are polymers capable of storing and transmitting genetic information. However, they differ from natural nucleic acids in the chemical structure of their backbone. The letter “X” stands for xeno, meaning foreign or alien, and highlights their molecular distinction from naturally occurring DNA and RNA.
Synthetic biologists investigate XNAs in order to design biological systems and molecular functions that do not exist in nature. Different forms of XNA are produced by replacing the natural sugar component of DNA or RNA with alternative molecules. Examples include threose nucleic acid, or TNA; glycol nucleic acid, or GNA; and hexitol nucleic acid, or HNA.
These structural modifications make it possible to create synthetic genetic systems with distinctive chemical properties, potentially enabling the development of artificial genes, new forms of molecular information storage, and biological mechanisms beyond those found in natural organisms.
XNA encompasses a variety of synthetic nucleic acid structures that differ chemically from their natural counterparts. These structures can incorporate alternative sugar backbones, such as threose, glycol, or hexitol, enabling the creation of xeno-nucleic acids and artificial genetic systems with properties distinct from those of natural DNA.
Xeno Dna with tetrahedral or octahedral helix structure
Unlike natural DNA, XNAs contain chemically modified molecular backbones and may therefore adopt a range of helical geometries and structural configurations. These differences can provide distinctive properties, including enhanced chemical stability, resistance to enzymatic degradation, and the ability to store and transmit sequence-defined genetic information.
Experimental studies have demonstrated that certain XNAs can undergo heredity and Darwinian evolution under controlled laboratory conditions. This makes them promising candidates for the development of synthetic genes, artificial chromosomes, and genetic systems that operate independently of natural DNA and RNA.
In the future, such technologies could contribute to the creation of highly engineered microorganisms or xeno-organisms with biological functions not found in nature. However, fully autonomous organisms whose genetic systems are based entirely on XNA have not yet been created, and their development remains a long-term objective of synthetic biology.
Meiosis is a specialized form of cell division in which a single cell undergoes two successive divisions, producing four daughter cells, each containing half the original number of chromosomes.
Mitosis, by contrast, is the process through which one cell divides to produce two genetically identical daughter cells, while preserving the same number of chromosomes as the parent cell.
Through the controlled duplication and distribution of synthetic chromosomes, researchers could theoretically initiate the development of an embryonic xeno-life form. However, the creation of a viable organism based entirely on an artificial genetic system remains a speculative objective rather than an established scientific achievement.
Syntetic virus created from Xna genes
Synthetic bacterium created from Xna genes
Synthetic chromosomes with Xna genes
Synthetic embryo models can progress beyond gastrulation, reaching neurulation and the early stages of organogenesis.
These integrated embryoid systems provide a powerful in vitro platform for investigating the roles of specific cell lineages, genes, and molecular pathways during development. The findings demonstrate that embryonic stem cells, together with two distinct types of extra-embryonic stem cells, can self-organize and partially reconstruct key stages of mammalian development, from gastrulation through neurulation and into early organ formation.
Scientific References
1. Eschenmoser A. Chemical etiology of nucleic acid structure. Science. 1999;284:2118–24. [PubMed] [Google Scholar]
2. Herdewijn P, Marliere P. Toward safe genetically modified organisms through the chemical diversification of nucleic acids. Chem Biodiversity. 2009;6:791–808. [PubMed] [Google Scholar]
3. Benner SA, Sismour AM. Synthetic biology. Nat Rev Genet. 2005;6:533–43. [PMC free article] [PubMed] [Google Scholar]
4. Woese C. The universal ancestor. Proc Natl Acad Sci USA. 1998;95:6854–9. [PMC free article] [PubMed] [Google Scholar]
5. Pace NR. The universal nature of biochemistry. Proc Natl Acad Sci USA. 2001;98:805–8. [PMC free article] [PubMed] [Google Scholar]
6. Benner SA, Ricardo A, Carrigan MA. Is there a common chemical model for life in the universe? Curr Opin Chem Biol. 2004;8:672–89. [PubMed] [Google Scholar]
7. Sullivan WT, Baross JA. Planets and Life: The Emerging Science of Astrobiology. Cambridge, New York: Cambridge University Press; 2007. p. 604. [Google Scholar]
8. Ludlow RF, Otto S. Systems chemistry. Chem Soc Rev. 2008;37:101–8. [PubMed] [Google Scholar]
9. Szostak JW. Origins of life: systems chemistry on early Earth. Nature. 2009;459:171–2. [PubMed] [Google Scholar]
10. O'Malley MA, Powell A, Davies JF, et al. Knowledge-making distinctions in synthetic biology. Bioessays. 2008;30:57–65. [PubMed] [Google Scholar]
11. Deplazes A. Piecing together a puzzle. An exposition of synthetic biology. EMBO Rep. 2009;10:428–32. [PMC free article] [PubMed] [Google Scholar]
12. Schmidt M, Ganguli-Mitra A, Torgersen H, et al. A priority paper for the societal and ethical aspects of synthetic biology. Syst Synth Biol. 2009;3:3–7. [PMC free article] [PubMed] [Google Scholar]
13. Szostak JW, Bartel DP, Luisi PL. Synthesizing life. Nature. 2001;409:387–90. [PubMed] [Google Scholar]
14. Rasmussen S, Chen L, Deamer D, et al. Evolution. Transitions from nonliving to living matter. Science. 2004;303:963–5. [PubMed] [Google Scholar]
15. Mansy SS, Schrum JP, Krishnamurthy M, et al. Template-directed synthesis of a genetic polymer in a model protocell. Nature. 2008;454:122–5. [PMC free article] [PubMed] [Google Scholar]
16. Luisi PL. Chemical aspects of synthetic biology. Chem Biodiversity. 2007;4:603–21. [PubMed] [Google Scholar]
17. Yang Z, Sismour AM, Sheng P, et al. Enzymatic incorporation of a third nucleobase pair. Nucleic Acids Res. 2007;35:4238–49. [PMC free article] [PubMed] [Google Scholar]
18. Leconte AM, Hwang GT, Matsuda S, et al. Discovery, characterization, and optimization of an unnatural base pair for expansion of the genetic alphabet. J Am Chem Soc. 2008;130:2336–43. [PMC free article] [PubMed] [Google Scholar]
19. Baldwin CY, Clark KB. Design rules. Vol. 1. Cambridge: MA:MIT Press; 2000. pp. 63–92. [Google Scholar]
20. Hold C, Panke S. Towards the engineering of in vitro systems. J R Soc Interface. 2009;6(Suppl 4):S507–21. [PMC free article] [PubMed] [Google Scholar]
21. de las Heras A, Carreno CA, de Lorenzo V. Stable implantation of orthogonal sensor circuits in Gram-negative bacteria for environmental release. Environ Microbiol. 2008;10:3305–16. [PubMed] [Google Scholar]
22. Luisi PL, Chiarabelli C, Stano P. From never born proteins to minimal living cells: two projects in synthetic biology. Orig Life Evol Biosph. 2006;36:605–16. [PubMed] [Google Scholar]
23. Seelig B, Szostak JW. Selection and evolution of enzymes from a partially randomized non-catalytic scaffold. Nature. 2007;448:828–31. [PMC free article] [PubMed] [Google Scholar]
24. Church G. 2009. http://www.edge.org/3rd_culture/church_venter09/church_venter09_index.html. A short course on synthetic genomics. Presentation at EDGE Masterclass.
25. Wang L, Brock A, Herberich B, et al. Expanding the genetic code of Escherichia coli. Science. 2001;292:498–500. [PubMed] [Google Scholar]
26. Chin JW, Cropp TA, Anderson JC, et al. An expanded eukaryotic genetic code. Science. 2003;301:964–7. [PubMed] [Google Scholar]
27. Liu W, Brock A, Chen S, et al. Genetic incorporation of unnatural amino acids into proteins in mammalian cells. Nat Methods. 2007;4:239–44. [PubMed] [Google Scholar]
28. Anderson JC, Wu N, Santoro SW, et al. An expanded genetic code with a functional quadruplet codon. Proc Natl Acad Sci USA. 2004;101:7566–71. [PMC free article] [PubMed] [Google Scholar]
29. Chin JW. Modular approaches to expanding the functions of living matter. Nat Chem Biol. 2006;2:304–11. [PubMed] [Google Scholar]
30. Sismour AM, Lutz S, Park JH, et al. PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1. Nucleic Acids Res. 2004;32:728–35. [PMC free article] [PubMed] [Google Scholar]
31. Yang Z, Hutter D, Sheng P, et al. Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern. Nucleic Acids Res. 2006;34:6095–101. [PMC free article] [PubMed] [Google Scholar]
32. Sismour AM, Benner SA. The use of thymidine analogs to improve the replication of an extra DNA base pair: a synthetic biological system. Nucleic Acids Res. 2005;33:5640–46. [PMC free article] [PubMed] [Google Scholar]
33. Havemann SA, Hoshika S, Hutter D, et al. Incorporation of multiple sequential pseudothymidines by DNA polymerases and their impact on DNA duplex structure. Nucleosides, Nucleotides Nucleic Acids. 2008;27:261–78. [PubMed] [Google Scholar]
34. Carlson R. The pace and proliferation of biological technologies. Biosecur Bioterror. 2003;1:203–214. [PubMed] [Google Scholar]
35. Schmidt M. Diffusion of synthetic biology: a challenge to biosafety. Syst Synth Biol. 2008;2:1–6. [PMC free article] [PubMed] [Google Scholar]
36. Ran T, Kaplan S, Shapiro E. Molecular implementation of simple logic programs. Nat Nanotechnol. 2009;4:6. [PubMed] [Google Scholar]
37. Kershner RJ, Bozano LD, Micheel CM, et al. Placement and orientation of individual DNA shapes on lithographically patterned surfaces. Nat Nanotechnol. 2009;4:557–61. [PubMed] [Google Scholar]
38. Haeckel EHPA. The evolution of man; a popular exposition of the principal points of human ontogeny and phylogeny. New York: D. Appleton and Company; 1883. [Google Scholar]
39. Marliere P. The farther, the safer: a manifesto for securely navigating synthetic species away from the old living world. Syst Synth Biol. 2009;3:77–84. [PMC free article] [PubMed] [Google Scholar]
40. Torres B, Jaenecke S, Timmis KN, et al. A dual lethal system to enhance containment of recombinant micro-organisms. Microbiology. 2003;149:3595–601. [PubMed] [Google Scholar]
41. Vastmans K, Froeyen M, Kerremans L, et al. Reverse transcriptase incorporation of 1,5-anhydrohexitol nucleotides. Nucleic Acids Res. 2001;29:3154–63. [PMC free article] [PubMed] [Google Scholar]
42. Ichida JK, Horhota A, Zou K, et al. High fidelity TNA synthesis by Therminator polymerase. Nucleic Acids Res. 2005;33:5219–25. [PMC free article] [PubMed] [Google Scholar]
43. Kempeneers V, Renders M, Froeyen M, et al. Investigation of the DNA-dependent cyclohexenyl nucleic acid polymerization and the cyclohexenyl nucleic acid-dependent DNA polymerization. Nucleic Acids Res. 2005;33:3828–36. [PMC free article] [PubMed] [Google Scholar]
44. Loakes D, Gallego J, Pinheiro VB, et al. Evolving a polymerase for hydrophobic base analogues. J Am Chem Soc. 2009;131:14827–37. [PMC free article] [PubMed] [Google Scholar]
45. Lartigue C, Glass JI, Alperovich N, et al. Genome transplantation in bacteria: changing one species to another. Science. 2007;317:632–8. [PubMed] [Google Scholar]
46. Lartigue C, Vashee S, Algire MA, et al. Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science. 2009;325:1693–6. [PubMed] [Google Scholar]
47. Rasmussen S, Bedau MA, Chen L, et al. Protocells: Bridging Nonliving and Living Matter. Cambridge, MA: MIT Press; 2008. p. 684. [Google Scholar]
48. Berg P. Meetings that changed the world: Asilomar 1975: DNA modification secured. Nature. 2008;455:290–1. [PubMed] [Google Scholar]
49. Berg P, Baltimore D, Brenner S, et al. Asilomar conference on recombinant DNA molecules. Science. 1975;188:991–4. [PubMed] [Google Scholar]
50. Berg P, Baltimore D, Brenner S, et al. Summary statement of the Asilomar conference on recombinant DNA molecules. Proc Natl Acad Sci USA. 1975;72:1981–4. [PMC free article] [PubMed] [Google Scholar]
51. Schmidt M, Kelle A, et al. Synthetic biology: the technoscience and its societal consequences. New York: Springer; 2009. [Google Scholar]