Heterogeneous Folding Intermediates Govern the Conformational Pathway of the RNA Recognition Motif Domainof the Ewing Sarcoma Protein, Priyanka Kataria , Vishakha Chaudhary, Chandra Bhushan Mishra, Vijay Kumar, Ravi Datta Sharma and Amresh Prakash, Biomolecules, 2025 https://doi.org/10.3390/biom16010033
Genetic Analysis of Nucleoside Diphosphate Kinase Variants in Escherichia coli: Implications for Virulence and Inflammatory Responses, Nisha, Deepak Chand Sharma, Ravi Datta Sharma, Jinny Tomar, International Journal of Pharmaceutical Sciences and Drug Research, https://10.25004/IJPSDR.2025.170108
Prevalence Around Inflammatory Caspases in Urinary Tract Infections, Review, Nisha, Deepak Chand Sharma, Ravi Datta Sharma1 and Jinny Tomar, BIOSCIENCES BIOTECHNOLOGY RESEARCH ASIA, December 2024, Vol. 21(4), p. 1349-1361, https://dx.doi.org/10.13005/bbra/3308
Engineered nanomicelles inhibit the tumour progression via abrogating the prostaglandin-mediated immunosuppression, Poonam Yadav, Kajal Rana, Viviani Nardini, Ali Khan, Trishna Pani, Animesh Kar, Dolly Jain, Ruchira Chakraborty, Ragini Singh, Somesh K. Jha, Devashish Mehta, Harsh Sharma, Ravi Datta Sharma, S.V.S. Deo, Sagar Sengupta, Veena S. Patil, Lúcia Helena Faccioli, Ujjaini Dasgupta, Avinash Bajaj, Journal of Controlled Release 368 (2024) 548–565 DOI: https://doi.org/10.1016/j.jconrel.2024.03.009
A Localized Hydrogel-mediated Chemotherapy Causes Immunogenic Cell Death via Activation of Ceramide- mediated Unfolded Protein Response, Animesh Kar, Dolly Jain, Sandeep Kumar, Kajal Rajput, Sanjay Pal,Kajal Rana,Raunak Kar,Somesh K. Jha, Nihal Medatwal, Prabhu Srinivas Yavvari, Nishant Pandey, Devashish Mehta, Harsh Sharma, Debanjan Bhattacharya, Manas K. Pradhan, Ravi Datta Sharma,Aasheesh Srivastava, Usha Agarwal, Arnab Mukhopadhyay, Sagar Sengupta,Veena S. Patil,Avinash Bajaj and Ujjaini Dasgupta, Sci. Adv.9,eadf2746(2023).DOI:10.1126/sciadv.adf2746
Prediction of transcript structure and concentration using RNA-Seq data, Harsh Sharma, Trishna Pani, Ujjaini Dasgupta, Jyotsna Batra, Ravi Datta Sharma, Briefings in Bioinformatics, 2023, 1–9, DOI: https://doi.org/10.1093/bib/bbad022 IF-13.99
Directed Evolution Detects Supernumerary Centric Chromosomes Conferring Resistance to Azoles in Candida auris, Aswathy Narayanan,Praveen Kumar,Anshu Chauhan,Mohit Kumar,Kusum Yadav,Atanu Banerjee,Ravi Datta Sharma,Shivaprakash M. Rudramurthy,Arunaloke Chakrabarti,Kaustuv Sanyal, Rajendra Prasad, mBio. 2022 Nov 29;13(6):e0305222
Progesterone limits the tumor-promoting effects of the beta-subunit of human chorionic gonadotropin via non-nuclear receptors, Moumita Sarkar, Harsh Sharma, Parminder Singh, Ranbala Ranu, Ravi Datta Sharma, Usha Agrawal, Rahul Pal, iScience, 25 (7),104527,2022 IF-5.7
Candidate mRNA Isoforms for Prostate Cancer-Risk SNPs Utilizing Iso-eQTL and sQTL Methods, Afshin Moradi, Harsh Sharma, Ravi Datta Sharma, Achala Fernando, Roberto A. Barrero and Jyotsna Batra, Int. J. Mol.Sci.2022,23,12406.IF-6.2
Computational insights of the unfolding of N-Terminal domain of TDP-43 reveal the conformational heterogeneity in the unfolding pathway, Ruhar Singh, Tara Kashav, Ravi Datta Sharma, Andrew M. Lynn, Rajendra Prasad, Amresh Prakash, Vijay Kumar, Front. Mol. Neurosci. 15:822863,IF-5.13, doi: 10.3389/fnmol.2022.822863
Alternative Splicing of Ceramide Synthase 2 Alters Levels of Specific Ceramides and Modulates Cancer Cell Proliferation and Migration in Luminal B Breast Cancer Subtype, Trishna Pani, Kajal Rajput, Animesh Kar, Harsh Sharma, Rituparna Basak, Nihal Medatwal, Sandhini Saha, Gagan Dev, Sharwan Kumar, Siddhi Gupta, Arnab Mukhopadhyay, Dipankar Malakar, Tushar Maiti, Aneeshkumar G. Arimbasseri, SVS Deo, Ravi Sharma, Avinash Bajaj, and Ujjaini Dasgupta, Cell Death & Disease,2, Article number: 171 (2021),IF-8.4
Identification of Nafamostat and VR23 as COVID-19 drug candidates by targeting 3CLpro and PLpro,Deep Bhowmik, Ravi D.Sharma, Amresh Prakash, Diwakar Kumara, Journal of Molecular Structure, 1233(2021),130094, IF-2.0
A Novel Multi Class Random Forest (MCRF) Model for Detecting Small Peptides, Ankita Tripathi, Tapas Goswami,Shrawan Kumar Trivedi, Ravi Datta Sharma, International Journal of Information Management Data Insights, 1(2), November 2021, 100029
Identifying the natural polyphenol Catechin as a multitargated agent against SARS- cvV2 For the plausible therapy of COVID19: An Integrated computational approach, Chandra Bhushan Mishra, Preeti Pandey, Ravi Datta Sharma, Md. Zubbair Malik, Raj Kumar, Mongre, Andrew. M. Lynn, Rajendra Prasad, Raok Jeon and Amresh Prakash, Briefings in Bioinformatics, 2020, Accepted, Impact factor-11.6
Identification of Best Features of Small Peptides Using Various Feature Selection, Ankita Tripathi, Tapas Goswami, Shrawan Kumar Trivedi and Ravi Datta Sharma, International Journal of Advanced Research in Engineering and Technology,11(12), 2020, pp. 384-394
Bile Acid-tethered Docetaxel-based Nanomicelle Mitigates Tumor progression via Epigenetic Changes, Vedagopuram Sreekanth, Animesh Kar, Sandeep Kumar, Sanjay Pal, Poonam Yadav, Yamini Sharma, Varsha Komalla, Harsh Sharma, Radhey Shyam, Ravi D Sharma, Arnab Mukhopadhyay, Sagar Sengupta, Ujjaini Dasgupta, Avinash Bajaj, Angewandte Chemie,2020 Nov 30, Impact factor-15.3
Activation of GPR56, a novel adhesion GPCR, is necessary for nuclear androgen receptor signaling in prostate cells, Julie Pratibha Singh, Manisha Dagar, Gunjan Dagar,Sudhir Rawal,Ravi Datta Sharma, Rakesh Kumar Tyagi,Sudhir Kumar,Gargi Bagchi, Plos One, 2020,15(9): e0226056 (IF-2.7)
Identification of Genome-Wide Alternative Splicing Events in Sequential, Isogenic Clinical Isolates of Candida albicans Reveals a Novel Mechanism of Drug Resistance and Tolerance to Cellular Stresses" by Suraya Muzafar, Ravi Sharma, Abdul Shah, Naseem Gaur, Ujjaini Dasgupta, Neeraj Chauhan, and Rajendra Prasad, MSphere, Page 4 of 8, July 2020,5:e00608-20 (IF-4.2)
VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response, Sakshi Agarwal, Arun Sharma, Rania Bouzeyen, Amar Deep, Harsh Sharma, Kiran K Mangalaparthi, Keshava K Datta, Saqib Kidwai, Harsha Gowda, Raghavan Varadarajan, Ravi Datta Sharma, Krishan Gopal Thakur and Ramandeep Singh, Science Advances,03 Jun 2020:6(23),eaba6944 DOI: 10.1126/sciadv.aba6944,Impact factor-14.1
A Localized Chimeric Hydrogel Therapy Combats Tumor Progression through Alteration of Sphingolipid Metabolism, Sanjay Pal, Nihal Medatwal, Sandeep Kumar, Animesh Kar,Varsha Komalla,Prabhu Srinivas Yavvari, Deepakkumar Mishra, Zaigham Abbas Rizvi,Shiv Nandan,Dipankar Malakar,Manoj Pillai,Amit Awasthi, Prasenjit Das,Ravi Datta Sharma,Aasheesh Srivastava,Sagar Sengupta, Ujjaini Dasgupta, and Avinash Bajaj, ACS Central Sciences,2019, 5 (10), 1648-1662, DOI: 10.1021/acscentsci.9b00551,Impact factor-14.5
Delineating the conformational dynamics of intermediate structures on the unfolding pathway of β-lactoglobulin in aqueous urea and dimethyl sulfoxide, Ruhar Singh, Naveen Kumar Meena, Trishala Das, Ravi Datta Sharma, Amresh Prakash Icon & Andrew M. Lynn, Journal of Biomolecular Structure and Dynamics,2019,DOI:10.1080/07391102.2019.1695669, Impact factor-3.3
Multiple transcription factors co-regulate the Mycobacterium tuberculosis adaptation, response to Vitamin C, Malobi Nandi, Kriti Sikri, Neha Chaudhary, Shekhar Chintamani Mande, Ravi Datta Sharma & Jaya Sivaswami Tyagi, BMC Genomics 20, Article number: 887(2019),Doi: 10.1186/s12864-019-6190-3 ,Impact factor-3.7
Aberrant splicing of BAF45d in gliomas: a link between splicing regulation and transcription, Guillermo Aldave, Marisol Gonzalez-Huarriz,Angel Rubio, Juan Pablo Romero, Datta Ravi, Belén Miñana, Mar Cuadrado-Tejedor, Ana García- Osta, Roeland Verhaak, Enric Xipell, Naiara Martinez-Vélez, Arlet Acanda de la Rocha, Montserrat Puigdelloses, Marc García-Moure, Miguel Marigil, Jaime Gállego Pérez- Larraya, Oskar Marín-Bejar, Maite Huarte, Maria Stella Carro, Roberto Ferrarese, Cristobal Belda-Iniesta, Angel Ayuso,Ricardo Prat-Acín,Fernando Pastor, Ricardo Díez- Valle, Sonia Tejada, and Marta M. Alonso, Neuro-Oncology (2018),Volume 20, Issue 7, July 2018, Pages 930–941, DOI:10.1093/neuonc/noy007, Impact factor-10.09
Differential alternative splicing coupled to nonsense-mediated decay of mRNA ensures dietary restriction-induced longevity,Syed Tabrez, Ravi Sharma, Vaibhav Jain, Atif Siddiqui, and Arnab Mukhopadhyay, Nature Communications 8, Article number: 306 (2017), DOI:10.1038/s41467-017-00370-5, Impact factor-15
Understanding the molecular basis of stability in Kunitz (STI) family of inhibitors in terms of a conserved core tryptophan residue: A theoretical investigation, Ravi Datta Sharma, Nabajyoti Goswami, Debasree Ghosh, Sudip Majumder, Journal of Molecular Graphics and Modelling, 75(2017): 233-240, Impact factor-1.8
RDM16 and STA1 regulate differential usage of exon/intron in RNA directed DNA Methylation pathway,R. D. Sharma et al.Gene 2017 April 20(609): 62- 67,DOI:10.1016/j.gene.2017.01.027,Impact factor-2.3
A large-scale analysis of alternative splicing reveals a key role of QKI in lung cancer, Fernando J de Miguel, Ravi D Sharma et al., Molecular Oncology, 2016,Nov;10(9):1437-1449. DOI:10.1016/j.molonc.2016.08.001,Impact factor-5.3, ISSN: 1574-7891
Data on RDM16 and STA1 regulate differential usage of exon/intron in RNA directed DNA Methylation pathway, Ravi Datta Sharma, Bert Bogaerts, Neha Goyal, Data in Brief 12 (2017) 261–268
Identification of alternative splicing events regulated by the oncogenic factor SRSF1 in lung cancer, Fernando J de Miguel*, Ravi D Sharma*, María J Pajares, Luis M Montuenga, Angel Rubio, Ruben Pio, Cancer Res (2014)74:1105-1115, DOI: 10.1158/0008-5472.CAN-13-1481).Impact factor-8.65,[PMID: 24371231] *Joint First authors
High Temperature Unfolding of a truncated hemoglobin by Molecular Dynamics Simulation, R.D.Sharma et al., J Mol Model (2013)19:3993–4002.Imapct factor- 1.9 [PMID:23839248]
High temperature unfolding of Bacillus anthracis amidase-03 by molecular dynamics simulations, RD Sharma, AM Lynn, PK Sharma, Rajnee, Safdar jawaid, Bioinformation 3(10): 430-434 (2009). [PMID: 19759865]
A modelled structure for amidase-03 from Bacillus anthracis, RD Sharma, Nabajyoti Goswami, AM Lynn, Rajnee, PK Sharma, Safdar jawaid. Bioinformation 4(6):242-244 (2009). [PMID: 20975917]
Chapter 2 - Role of alternative splicing in health and diseases,Harsh Sharma, Kusum Yadav, Ravi Datta Sharma,Book:Transcription and Translation in Health and Disease,Editor(s): Manoj Garg, Gautam Sethi, Amit Kumar Pandey, Academic Press, 2023, Pages 19-36,ISBN 9780323995214, https://doi.org/10.1016/B978-0-323-99521-4.00002-7.
Chapter 34: In Silico Analysis of Endosymbionts of Bemisia tabaci (White Fly) by Artemis and Artemis Comparison Tool, Pardeep Kumar, Ravi Datta Sharma and Machiavelli Singh, Book: “Trends in Technology for Agriculture, Food, Environment and Health” Editors: R. K. Behl, Machiavelli Singh, Achim Ibenthal and Manfred J Kern released with AGROBIOS (INTERNATIONAL) ISBN: 978-81-947480-7-7
Chapter 13: Solving the Structure of Amidase-03, Ravi Datta Sharma and Garima Bhardwaj, Book: "Microbial Catalysts. Volume ", Editors: SMA aziz, NGarg , A aeron, CK Jha, SC Nayak, VK Bajpai released with NOVA Publisher (2019), ISBN: 978-1-53614-679-0
Ascertaining alternative splicing in non-small-cell-lung-carcinoma using Affymetrix Exon Junction Arrays (HJAY), RD Sharma, F. de Miguel, R. Pio, L. Montuenga, A. Rubio, In proceeding of 50th Anniversary Conference of tecnun, Engineering Science & Technology, San-Sebastian, Spain, 31 May, 2012
Alternative splicing in glioblastoma: a big new world ahead,Marisol Gonzalez-Huarriz, Guillermo Aldave, Datta Ravi, Angel Rubio, Miguel Marigil, Patricia Jauregi, Ricardo Diez-Valle, Beatriz Vera, Arlet-Acanda de la Rocha, Sonia Tejada, Marta M. Alonso, In -4th Quadrennial Meeting of the World Federation of Neuro-Oncology and 2013 Scientific Meeting, San-Francisco. Neuro-Oncology, 15:iii12–iii31, 2013 DOI:10.1093/neuonc/not174
Abstract 2124: Analysis of the functional relevance of novel alternative splicing events in non-small cell lung cancer, Fernando J. de Miguel, Ravi D. Sharma et al., Cancer res., August 1, 2015 -75;2124, doi:10.1158/1538- 7445.AM2015-2124
A method for Identification of GPR56 as a receptor for androgen signalling, Gargi Bagchi, Julie Pratibha Singh, Ravi Datta Sharma,Patent application no. 201911002934 (CRN3365), 24-01-2019
A method providing spliced transcripts of Ceramide synthase2 gene to alter the level of ceramides to affect tumor regression, Ujjaini Dasgupta and Ravi Datta Sharma, Patent application no.202011011239 (CRN3846),16-03-2020
GSE53410:de Miguel FJ, Sharma RD, Pajares MJ, Montuenga LM, Rubio A, Pio R., Identification of alternative splicing events regulated by the splicing factor SRSF1 using data from exon-junction microarray technologies