Phylogenetic tree/network inference 

HMM-based introgression detection and analysis 

Non-tree-like evolution in metagenomics

Deep learning-based complex protein structure and function prediction

Fold recognition and protein structure prediction

Domain boundary prediction

Contact map analysis and prediction

DNA binding protein prediction 

Post-translational Modification (PTM) Prediction

Metabolic Network and pathway of diseases, such as Alzheimer’s Disease and HIV