Publications

• Chromosome-Level Genome Assembly of Ir64 Near-Isogenic Line Harboring Saltol Reveals Novel Genomic Regions Associated with Salinity Tolerance in Rice (Oryza Sativa L.)

JH Han, JH Hwang, NH Shin, HS Lee, S Kim… - Plant Physiology and Biochemistry, 2025

• Comparative Analysis of Chemical Profiles and Bioactive Properties in Six Pigmented and Non-Pigmented Rice Varieties

N Yoon, Y Kim, JH Chin, S Lee - Chemistry, 2025

• The genetics and genomics of milk thistle: unlocking its therapeutic potential through modern breeding and biotechnological innovations

P Tolangi, J Shim, RM Sumabat, S Kim, HS Park… - Applied Biological Chemistry, 2024

• Agricultural phenotype and silymarin content variations of cultivated milk thistle in Korea

J Shim, H Cho, JS Sung, E Yoo, JH Chin, S Lee - Horticulture, Environment, and Biotechnology, 2024

• The First Domesticated ‘Cheongju Sorori Rice’Excavated in Korea

YG Cho, MS Kim, KK Kang, JH Chin, JK Yu, S Cho… - Plants, 2024

• The BEL1‐like homeodomain protein OsBLH4 regulates rice plant height, grain number, and heading date by repressing the expression of OsGA2ox1

C Cao, S Guo, P Deng, S Yang, J Xu, T Hu, Z Hu… - The Plant Journal, 2024

• Enhancement of rice traits for the maintenance of the phosphorus balance between rice plants and the soil

IP Navea, S Yang, P Tolangi, RM Sumabat, W Zhang… - Current Plant Biology, 2024

• Analysis of silybin A and silybin B in different accessions of Silybum marianum seeds

NP Uy, J Shim, HD Lee, JS Sung, E Yoo, JH Chin… - Journal of Applied Biological Chemistry, 2024

• Chromosome-level genome assembly of milk thistle (Silybum marianum (L.) Gaertn.)

KD Kim, J Shim, JH Hwang, D Kim, M El Baidouri… - Scientific Data, 2024

• Editorial special issue on genomic assisted crop improvement

SR Kim, JS Jeon, JH Chin - 2024

• Optimizing extrusion processes: Development of extrudates utilizing ISP and wheat gluten, incorporating diverse concentrations of rice or legume varieties

A Bakhsh, Y Son, B Kim, J Chin, S Park - Journal of Agriculture and Food Research, 2024

• Antioxidant activities and silymarin content of Silybum marianum using different extraction methods

J Kim, SH Han, NK Kim, GH Tran, J Shim, JH Chin… - Journal of Applied Biological Chemistry, 2024

• A meta-QTL analysis highlights genomic hotspots associated with phosphorus use efficiency in rice (Oryza sativa L.)

IP Navea, PP Maung, S Yang, JH Han, W Jing… - Frontiers in Plant Science, 2023

• Inhibitory effects of polyphenol-and flavonoid-enriched rice seed extract on melanogenesis in melan-a cells via MAPK signaling-mediated MITF downregulation

C Monmai, JS Kim, JH Chin, S Lee, SH Baek - International Journal of Molecular Sciences, 2023

• A genomic evaluation of six selected inbred lines of the naturalized plants of milk thistle (Silybum marianum L. Gaertn.) in Korea

J Shim, SY Hong, JH Han, Y Yu, E Yoo, J Sung… - Plants, 2023

• Transcriptional repressor RST1 controls salt tolerance and grain yield in rice by regulating gene expression of asparagine synthetase

P Deng, W Jing, C Cao, M Sun, W Chi, S Zhao, J Dai… - Proceedings of the National Academy of Sciences, 2022

• GWAS analysis to elucidate genetic composition underlying a photoperiod-insensitive rice population, North Korea

C Jadamba, RL Vea, JH Ryu, NC Paek, S Jang… - Frontiers in Genetics, 2022

• Development of a temperate climate-adapted indica multi-stress tolerant rice variety by pyramiding quantitative trait loci

NH Shin, JH Han, KTX Vo, J Seo, IP Navea, SC Yoo… - Rice, 2022

• Assessing the effect of a major quantitative locus for phosphorus uptake (Pup1) in rice (O. sativa L.) grown under a temperate region

IP Navea, JH Han, NH Shin, ON Lee, SW Kwon… - Agriculture, 2022

• Recent Advances in Genetics and Breeding of Major Staple Food Crops

JH Chin, BPM Swamy - 2021

• The effect of water level in rice cropping system on phosphorus uptake activity of Pup1 in a Pup1+ Sub1 breeding line

NH Shin, ON Lee, JH Han, K Song, HJ Koh, SC Yoo… - Plants, 2021

• Development of Kompetitive allele specific PCR markers for anaerobic germination 1 locus in Rice

JW Lee, JH Chin, SC Yoo - Plant breeding and biotechnology, 2021

• Population structure and genetic diversity of Cucurbita moschata based on genome-wide high-quality SNPs

HY Lee, S Jang, CR Yu, BC Kang, JH Chin, K Song - Plants, 2020

• Genome-wide association study of root system development at seedling stage in rice

H Zhang, ML San, SG Jang, JH Lee, NE Kim, AR Lee… - Genes, 2020

• Early vigor of a pyramiding line containing two quantitative trait loci, phosphorus uptake 1 (Pup1) and anaerobic germination 1 (ag1) in rice (O. sativa L.)

NH Shin, JH Han, S Jang, K Song, HJ Koh, JH Lee… - Agriculture, 2020

• Characterization of the common japonica-originated genomic regions in the high-yielding varieties developed from inter-subspecific crosses in temperate Rice (Oryza sativa L.)

J Seo, SM Lee, JH Han, NH Shin, YK Lee, B Kim… - Genes, 2020

• Development and application of indica–japonica SNP assays using the Fluidigm platform for rice genetic analysis and molecular breeding

J Seo, G Lee, Z Jin, B Kim, JH Chin, HJ Koh - Molecular Breeding, 2020

• Mapping and validation of QTLs for the amino acid and total protein content in brown rice

S Jang, JH Han, YK Lee, NH Shin, YJ Kang, CK Kim… - Frontiers in Genetics, 2020

• Genetic and phenotypic characterization of rice backcrossed inbred sister lines of Saltol in temperate saline reclaimed area

JH Han, NH Shin, JH Moon, C Yi, SC Yoo, JH Chin - Plant breeding and biotechnology, 2020

• Evaluation of whole-genome sequence, genetic diversity, and agronomic traits of Basmati rice (Oryza sativa L.)

DS Kishor, J Seo, JH Chin, HJ Koh - Frontiers in Genetics, 2020

• Complete chloroplast genome of a milk thistle (Silybum marianum) acc.‘912036’

J Shim - Plant breeding and biotechnology, 2020

• Identification of yield and yield-related quantitative trait loci for the field high temperature condition in backcross populations of rice (Oryza sativa L.)

J Seo, SM Lee, JH Han, NH Shin, HJ Koh, JH Chin - Plant breeding and biotechnology, 2019

• Identification and characterization of LARGE EMBRYO, a new gene controlling embryo size in rice (Oryza sativa L.)

G Lee, R Piao, Y Lee, B Kim, J Seo, D Lee, S Jang… - Rice, 2019

• Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.)

DS Kishor, C Lee, D Lee, J Venkatesh, J Seo, JH Chin… - PLoS One, 2019

• Genetic dissection of grain nutritional traits and leaf blight resistance in rice

GI Descalsota-Empleo, AAS Noraziyah, IP Navea… - Genes, 2019

• Identification of Quantitative Trait Loci for Fatty Acid Content in Brown Rice (Oryza sativa L.)

S Jang, JH Chin - Plant breeding and biotechnology, 2018

• Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.)

G Lee, KI Lee, Y Lee, B Kim, D Lee, J Seo, S Jang… - Theoretical and Applied Genetics, 2018

• Identification of quantitative trait loci for vigorous root development under water-deficiency conditions in rice

JH Han, NH Shin, S Jang, Y Yu, JH Chin, SC Yoo - Plant Breeding and Biotechnology, 2018

• Association between sequence variants in panicle development genes and the number of spikelets per panicle in rice

S Jang, Y Lee, G Lee, J Seo, D Lee, Y Yu, JH Chin… - BMC genetics, 2018

• The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)

Y Yu, HO Lee, JH Chin, HY Park, SC Yoo - Mitochondrial DNA Part B, 2017

• Identification of heterosis QTLs for yield and yield-related traits in indica-japonica recombinant inbred lines of rice (Oryza sativa L.)

CK Kim, SH Chu, HY Park, J Seo, B Kim, G Lee… - Plant breeding and biotechnology, 2017

• Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

MJ Thomson, N Singh, MS Dwiyanti, DR Wang… - Rice, 2017

• Sugary endosperm is modulated by starch branching enzyme IIa in rice (Oryza sativa L.)

Y Lee, MS Choi, G Lee, S Jang, MR Yoon, B Kim… - Rice, 2017

• Identification of quantitative trait loci for panicle length and yield related traits under different water and P application conditions in tropical region in rice (Oryza sativa L.)

IP Navea, MS Dwiyanti, J Park, B Kim, S Lee, X Huang… - Euphytica, 2017

• Sugary endosperm is modulated by starch branching enzyme IIa in rice (Oryza sativa L.). Rice 10: 33

Y Lee, MS Choi, G Lee, S Jang, MR Yoon, B Kim… - 2017

• A simple phenotyping method for deep-rooting rice grown in pots

JH Han, NH Shin, JH Moon, JH Chin, SC Yoo - Journal of Plant Biotechnology, 2016

• Characterization of selected rice varieties adapted in Africa

A Megersa, J Seo, JH Chin, B Kim, HJ Koh - Plant breeding and biotechnology, 2016

• Characterization of indica–japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato)

JH Chin, YJ Lee, W Jiang, HJ Koh, MJ Thomson - Genetic Resources and Crop Evolution, 2017

• Identification and characterization of

G Lee, R Piao, Y Lee, B Kim, J Seo, D Lee, S Jang… - LARGE EMBRYO, 2016

• Genetic diversity for mycorrhizal symbiosis and phosphate transporters in rice

K Jeong, N Mattes, S Catausan, JH Chin… - Journal of integrative plant biology, 2015

• Brief history and perspectives on plant breeding

J Lee, JH Chin, SN Ahn, HJ Koh - Current technologies in plant molecular breeding: a …, 2015

• Defining the genome structure ofTongil'rice, an important cultivar in the Korean" Green Revolution"

B Kim, DG Kim, G Lee, J Seo, IY Choi, BS Choi… - Rice, 2014

• Analysis of segregation distortion and its relationship to hybrid barriers in rice

Reflinur, B Kim, SM Jang, SH Chu, Y Bordiya, MB Akter… - Rice, 2014

• Application of indica–japonica single-nucleotide polymorphism markers for diversity analysis of Oryza AA genome species

YJ Lee, MJ Thomson, JH Chin - Plant Genetic Resources, 2014

• A novel allele of the P-st arvation tol erance gene OsPSTOL1 from African rice (Oryza glaberrima Steud) and its distribution in the genus Oryza

J Pariasca-Tanaka, JH Chin, KN Dramé, C Dalid… - Theoretical and Applied Genetics, 2014

• Molecular Breeding for Phosphorus‐efficient Rice

S Heuer, JH Chin, R Gamuyao, SM Haefele… - Translational genomics for crop breeding: Abiotic …, 2013

• The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

R Gamuyao, JH Chin, J Pariasca-Tanaka, P Pesaresi… - Nature, 2012

• QTL analyses of heterosis for grain yield and yield-related traits in indica-japonica crosses of rice (Oryza sativa L.)

SH Chu, W Jiang, J Lee, JH Chin, HJ Koh - Genes & Genomics, 2012

• QTLs for hybrid fertility and their association with female and male sterility in rice

Reflinur, JH Chin, SM Jang, B Kim, J Lee, HJ Koh - Genes & Genomics, 2012

• Mapping QTL for heat tolerance at flowering stage in rice using SNP markers

C Ye, MA Argayoso, ED Redoña, SN Sierra, MA Laza… - Plant Breeding, 2012

• Application of subspecies-specific marker system identified from O. sativa to O. glaberrima accessions and O. sativa× O. glaberrima F1 interspecific progenies

IK Bimpong, JH Chin, J Ramos, HJ Koh - 2011

• Identification of QTLs for drought-related traits in alien introgression lines derived from crosses of rice (Oryza sativa cv. IR64)× O. glaberrima under lowland moisture stress

IK Bimpong, R Serraj, JH Chin, J Ramos… - Journal of Plant biology, 2011

• Developing rice with high yield under phosphorus deficiency: Pup1 sequence to application

JH Chin, R Gamuyao, C Dalid, M Bustamam… - Plant physiology, 2011

• Determination of genetic variability for physiological traits related to drought tolerance in African rice (Oryza glaberrima)

IK Bimpong, R Serraj, JH Chin, EMT Mendoza… - Journal of Plant Breeding and Crop Science, 2011

• Shotgun proteomic analysis for detecting differentially expressed proteins in the reduced culm number rice

J Lee, W Jiang, Y Qiao, YI Cho, MO Woo, JH Chin… - Proteomics, 2011

• Identification of QTLs for hybrid fertility in inter-subspecific crosses of rice (Oryza sativa L.)

JH Chin, SH Chu, W Jiang, YI Cho, R Basyirin, DS Brar… - Genes & genomics, 2011

• Application of subspecies-specific marker system identified from Oryza sativa to Oryza glaberrima accessions and Oryza sativa× Oryza glaberrima F1 interspecific progenies

IK Bimpong, JH Chin, J Ramos, HJ Koh - Int J Genet Mol Biol, 2011

• Genotype× environment interactions for chilling tolerance of rice recombinant inbred lines under different low temperature environments

W Jiang, J Lee, SH Chu, TH Ham, MO Woo, YI Cho… - Field Crops Research, 2010

• Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1

JH Chin, X Lu, SM Haefele, R Gamuyao, A Ismail… - Theoretical and Applied Genetics, 2010

• Fine mapping and candidate gene analysis of the floury endosperm gene, FLO (a), in rice

Y Qiao, SI Lee, R Piao, W Jiang, TH Ham, JH Chin… - Molecules and cells, 2010

• High-resolution mapping of two rice brown planthopper resistance genes, Bph20 (t) and Bph21 (t), originating from Oryza minuta

ML Rahman, W Jiang, SH Chu, Y Qiao, TH Ham… - Theoretical and Applied Genetics, 2009

• Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure

S Heuer, X Lu, JH Chin, JP Tanaka, H Kanamori… - Plant Biotechnology Journal, 2009

• Fine mapping and candidate gene analysis of hwh1 and hwh2, a set of complementary genes controlling hybrid breakdown in rice

W Jiang, SH Chu, R Piao, JH Chin, YM Jin, J Lee… - Theoretical and applied genetics, 2008

• Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)

MO Woo, TH Ham, HS Ji, MS Choi, W Jiang, SH Chu… - The Plant Journal, 2008

• Identification of QTLs associated with physiological nitrogen use efficiency in rice

YI Cho, W Jiang, JH Chin, Z Piao, YG Cho… - Molecules and Cells, 2007

• Comparative genomic analysis and assessment of candidate genes at the Pup1 locus, a major QTL for phosphorus deficiency tolerance in rice.

S Heuer, X Lu, JH Chin, T De Leon, VJ Ulat, M Yano… - 2007

• Identification of subspecies-specific STS markers and their association with segregation distortion in rice (Oryza sativa L.)

JH Chin, JH Kim, W Jiang, SH Chu, MO Woo, L Han… - J Crop Sci Biotech, 2007

• Molecular mapping of a gene ‘ld (t)’controlling cleistogamy in rice

JY Maeng, YJ Won, R Piao, YI Cho, W Jiang, JH Chin… - Theoretical and Applied Genetics, 2006

• Analysis on genetic distance based on RAPD marker as related to the taste meter and RVA properties in indica rice hybrids

J Zheng-xun, J Wen-zhu, C Choong-hyoun, K Hee-jong - Chinese Journal OF Rice Science, 2005

• Grain characteristics and inheritance of two split-hull mutants in rice

CP Lee, JH Chin, YI Cho, HJ Koh - 한국육종학회지, 2004

• Key DNA markers for predicting heterosis in F1 hybrids of japonica rice

YI Cho, CW Park, SW Kwon, JH Chin, HS Ji, KJ Park… - Breeding Science, 2004

• Screening of physiological functionality of germinated giant embryonic rices

YR Lee, HJ Koh, SH Nam, MY Kang, JH Chin - Journal of the Korean Society for Applied Biological …, 2004

• Analysis on the combining ability of taste meter value and starch RVA properties in {\sl Indica} rice

J Zhengxun, J Wenzhu, C Joonghyoun, K Heejong - Zuo wu xue bao, 2004

• Antioxidative activity of germinated specialty rices

MY Kang, SY Kim, HJ Koh, JH Chin, SH Nam - Korean Journal of Food Science and Technology, 2004

• Identifying subspecies-specific DNA markers in rice

JH Chin, HJ Koh - Advances in Rice Genetics, 2003

• Identification of subspecies-specific RAPD markers in rice

JH Chin, JH Kim, SW Kwon, YI Cho, ZZ Piao, LZ Han… - Korean J. Breed, 2003