Publications

Google Scholar : ‪Yun Sun Lee‬

2025

Flavonoid pathway intermediates implicate UVR8 in functions beyond canonical UV-B signaling

N Jiang, T García Navarrete, YS Lee, EG Pawlowski, S Park, E Grotewold Nature Communications 16 (1), 7810

Comparative transcriptomic, proteomic, and amino acid content analyses of quinoa (Chenopodium quinoa) seed accessions from diverse geographic locations

ML Barberini+, YS Lee+, LD Guerrero+, M Obertello, MA Mazzella, D Bertero, ...BMC Plant Biology 25 (1), 1002 (Co-first author)

2024

GRASSIUS 2.0: A gene regulatory information knowledgebase for maize and other grasses

J Gray, YH Chu, A Abnave, FG Cano, YS Lee, S Percival, N Jiang, ...Current Plant Biology 40, 100396

Evolutionary trajectory of transcription factors and selection of targets for metabolic engineering

YS Lee, EL Braun, E Grotewold Philosophical Transactions B 379 (1914), 20230367

Exploring genetic diversity, population structure, and subgenome differences in the allopolyploid Camelina sativa: implications for future breeding and research …

JR Brock, KA Bird, AE Platts, F Gomez-Cano, SK Gupta, K Palos, ...Horticulture Research 11 (11), uhae247

Molecular mechanisms underlying gene regulatory variation of maize metabolic traits

YH Chu, YS Lee, F Gomez-Cano, L Gomez-Cano, P Zhou, AI Doseff, ...

The Plant Cell 36 (9), 3709-3728

Improved biomass and metabolite production in hairy root culture in various genotypes of Panax ginseng through genetic transformation

N Van Binh, MJ Kim, VNL Giang, YS Lee, M Jayakodi, HS Park, ...

Plant Cell, Tissue and Organ Culture (PCTOC) 156 (2), 43

2023

Evolution and diversification of the ACT-like domain associated with plant basic helix–loop–helix transcription factors

YS Lee, SH Shiu, E Grotewold

Proceedings of the National Academy of Sciences 120 (19), e2219469120

Comparative transcriptome and metabolome analyses of four Panax species explore the dynamics of metabolite biosynthesis

H Koo, YS Lee, VNL Giang, HJ Koo, HS Park, P Mohanan, YH Song, ...

Journal of Ginseng Research 47 (1), 44-53

2022

Genetic and chemical markers for authentication of three Artemisia species: A. capillaris, A. gmelinii, and A. fukudo

YS Lee, S Woo, JK Kim, JY Park, NK Izzah, HS Park, JH Kang, TJ Lee, ...

Plos one 17 (3), e0264576

Modeling temporal and hormonal regulation of plant transcriptional response to wounding

BM Moore, YS Lee, P Wang, C Azodi, E Grotewold, SH Shiu

The plant cell 34 (2), 867-888

Exploring Camelina sativa lipid metabolism regulation by combining gene co‐expression and DNA affinity purification analyses

F Gomez‐Cano, YH Chu, M Cruz‐Gomez, HM Abdullah, YS Lee, ...

The Plant Journal

2021

A hydrophobic residue stabilizes dimers of regulatory ACT-like domains in plant basic helix–loop–helix transcription factors

YS Lee, A Herrera-Tequia, J Silwal, JH Geiger, E Grotewold

Journal of Biological Chemistry 296

Assessing the genetic and chemical diversity of Taraxacum species in the Korean Peninsula

YS Lee, J Kim, S Woo, JY Park, HS Park, H Shim, HI Choi, JH Kang, ...

Phytochemistry 181, 112576

2020

Modeling gene regulation in response to wounding: temporal variations, hormonal variations, and specialized metabolism pathways induced by wounding

BM Moore, YS Lee, E Grotewold, SH Shiu

bioRxiv, 2020.07. 15.204313

Synergy between the anthocyanin and RDR6/SGS3/DCL4 siRNA pathways expose hidden features of Arabidopsis carbon metabolism

N Jiang, A Gutierrez-Diaz, E Mukundi, YS Lee, BC Meyers, MS Otegui, ...

Nature communications 11 (1), 2456

Diversity of genetic lesions characterizes new Arabidopsis flavonoid pigment mutant alleles from T-DNA collections

N Jiang, YS Lee, E Mukundi, F Gomez-Cano, L Rivero, E Grotewold

Plant Science 291, 110335

2018

Genome and evolution of the shade‐requiring medicinal herb Panax ginseng

NH Kim, M Jayakodi, SC Lee, BS Choi, W Jang, J Lee, HH Kim, ...

Plant biotechnology journal 16 (11), 1904-1917

Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng

KB Kang, M Jayakodi, YS Lee, VB Nguyen, HS Park, HJ Koo, IY Choi, ...

Scientific reports 8 (1), 11744

2017

Discrimination and authentication of Eclipta prostrata and E. alba based on the complete chloroplast genomes

I Kim, JY Park, YS Lee, HO Lee, HS Park, M Jayakodi, NE Waminal, ...

Plant breeding and biotechnology 5 (4), 334-343

The complete chloroplast genome sequence and intra-species diversity of Rhus chinensis

I Kim, JY Park, YS Lee, HJ Joh, SJ Kang, J Murukarthick, HO Lee, YJ Hur, ...

Plant breeding and biotechnology 5 (3), 243-251

Integrated Transcriptomic and Metabolomic Analysis of Five Panax ginseng Cultivars Reveals the Dynamics of Ginsenoside Biosynthesis

YS Lee, HS Park, DK Lee, M Jayakodi, NH Kim, HJ Koo, SC Lee, YJ Kim, ...

Frontiers in plant science 8, 1048

Comparative analysis of the transcriptomes and primary metabolite profiles of adventitious roots of five Panax ginseng cultivars

YS Lee, HS Park, DK Lee, M Jayakodi, NH Kim, SC Lee, A Kundu, ...

Journal of Ginseng Research 41 (1), 60-68

2016

Phylogenetic relationship of 40 species of genus Aloe L. and the origin of an allodiploid species revealed by nucleotide sequence variation in chloroplast intergenic space and …

YS Lee, HM Park, NH Kim, NE Waminal, YJ Kim, KB Lim, JH Baek, ...

Genetic Resources and Crop Evolution 63 (2), 235-242

The complete chloroplast genome sequence of Rhus chinensis Mill (Anacardiaceae)

YS Lee, I Kim, JK Kim, JY Park, HJ Joh, HS Park, HO Lee, SC Lee, YJ Hur, ...

Mitochondrial DNA Part B 1 (1), 696-697

The complete chloroplast genomes of two Taraxacum species, T. platycarpum Dahlst. and T. mongolicum Hand.-Mazz. (Asteraceae)

JK Kim, JY Park, YS Lee, SM Woo, HS Park, SC Lee, JH Kang, TJ Lee, ...

Mitochondrial DNA Part B 1 (1), 412-413

The complete chloroplast genome of Eclipta prostrata L. (Asteraceae)

JY Park, YS Lee, JK Kim, HO Lee, HS Park, SC Lee, JH Kang, TJ Lee, ...

Mitochondrial DNA Part B 1 (1), 414-415

The complete chloroplast genome sequences of Artemisia gmelinii andArtemisia capillaris (Asteraceae)

YS Lee, JY Park, JK Kim, HO Lee, HS Park, SC Lee, JH Kang, TJ Lee, ...

Mitochondrial DNA Part B 1 (1), 410-411

The complete chloroplast genome sequence of the Taraxacum officinale F.H.Wigg (Asteraceae)

JK Kim, JY Park, YS Lee, HO Lee, HS Park, SC Lee, JH Kang, TJ Lee, ...

Mitochondrial DNA Part B 1 (1), 228-229

Complete chloroplast genome sequence of Artemisia fukudo Makino (Asteraceae)

YS Lee, JY Park, JK Kim, HO Lee, HS Park, SC Lee, JH Kang, TJ Lee, ...

Mitochondrial DNA Part B 1 (1), 376-377

2015

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

K Kim, SC Lee, J Lee, Y Yu, K Yang, BS Choi, HJ Koh, NE Waminal, ...

Scientific reports 5 (1), 15655

Comprehensive analysis of Panax ginseng root transcriptomes

M Jayakodi, SC Lee, YS Lee, HS Park, NH Kim, W Jang, HO Lee, HJ Joh, ...

BMC plant biology 15 (1), 138

Transcriptome analysis reveals in vitro cultured Withania somnifera leaf and root tissues as a promising source for targeted withanolide biosynthesis

K Senthil, M Jayakodi, P Thirugnanasambantham, SC Lee, P Duraisamy, ...

BMC genomics 16 (1), 14

2014

Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots

M Jayakodi, SC Lee, HS Park, W Jang, YS Lee, BS Choi, GJ Nah, DS Kim, ...

Journal of Ginseng Research 38 (4), 278-288

2013

Enhancement of anti-inflammatory activity of Aloe vera adventitious root extracts through the alteration of primary and secondary metabolites via salicylic acid elicitation

YS Lee, HK Ju, YJ Kim, TG Lim, MR Uddin, YB Kim, JH Baek, SW Kwon, ...

PloS one 8 (12), e82479

Optimal protocol for mass propagation of Aloe vera

YS Lee, HM Park, SU Park, JH Baek, TJ Yang

Journal of crop science and biotechnology 16 (4), 285-290

Discrimination between genetically identical peony roots from different regions of origin based on 1H-nuclear magnetic resonance spectroscopy-based …

JA Um, YG Choi, DK Lee, YS Lee, CJ Lim, YA Youn, HD Lee, HJ Cho, ...

Analytical and bioanalytical chemistry 405 (23), 7523-7534

2011

Induction and Proliferation of Adventitious Roots from'Aloe vera'Leaf Tissues for'in vitro'Production of Aloe-emodin

YS Lee, TJ Yang, SU Park, JH Baek, SQ Wu, KB Lim

Plant Omics 4 (4), 190-194

Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots. J Ginseng Res. 2014; 38 (4): 278–88

M Jayakodi, SC Lee, HS Park, W Jang, YS Lee, BS Choi, GJ Nah, DS Kim, ...

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