Selected publications
Shuai P, Hsieh JWA, Kao CT, Hu CW, Wang R, Kuo SC, Yen MR, Liou PC, Ho YC, Huang S, Liu J, Zhang L, Wu CC, Li Q, Hsu CC, Huang CL, Su JC, Tseng MC, Chen YL*, Mai TL*, Lin YJ*. Single-Cell and Spatial Omics Reveals Progressive Loss of Xylem Developmental Complexity across Seed Plants. The Plant Cell. (2025 October) https://doi.org/10.1093/plcell/koaf253. (5-Year IF:12.1) (*corresponding author)
Yu JH, Hsieh JWA, Wang Z, Wei J, Li Q, Chen YL*, Lin YJ*. Decoding Xylem Development in Flowering Plants: Insights from Single-Cell Transcriptomics. Plant, Cell & Environment. (2025 September) doi: 10.1111/pce.70169. (5-Year IF: 7.6) (*corresponding author)
Hsieh JWA, Liou PC, Lin CC, Dai X, Hu CW, Wang IF, Dang JF, Ho YC, Cheng KW, Xu W, Kuo SC, Kao CT, Yang DX, Wang R, Xiao K, Lin JS, Hsu CC, Hsu CC, Mai TL, Cheng Y, Tseng MC, Li W*, Chen YL*, Lin YJ*. Single-Cell and Spatial Multiomics Identifies Heterogeneous Xylem Development Driven by Mechanical Stress in Populus. Developmental Cell. (2025, July). S1534-5807(25);00436-8 (5-Year IF:11.5). (*corresponding author)
Truong TTT, Huang CC, Chiu CC, Su PY, Chang CH, Kuo SC, Chen YL, Mimura T, Lee RH, Gojobori T, Huang HJ*. Microbial Volatile 3‐Methyl‐1‐Butanol Enhances Stomatal Closure and Salt Stress Tolerance via Ethylene and Jasmonate Pathways in Arabidopsis. Physiologia plantarum. (2025, July). 177 (4), e70383. (5-Year IF: 5.4).
Kao CT, Yang FW, Wu MC, Hung TH, Hu CW, Chen CH, Liou PC, Mai TL, Chang CC, Lin TY, Chen YL*, Lin YJ*, Su JC*. Systematic synthesis and identification of monolignol pathway metabolites. New Phytologist. 2024 September. doi: 10.1111/nph.20101. (5-Year IF:10.2) (*corresponding author)
Lin SC, Tsai YC, Chen YL, Lin HK, Huang YC, Lin YS, Cheng YS, Chen HY, Li CJ, Lin TY, Lin SC*. Un-methylation of NUDT21 represses docosahexaenoic acid biosynthesis contributing to enzalutamide resistance in prostate cancer. Drug Resistance Updates. 2024 August, 10144. (5-Year IF: 18.1)
Sun PF, Lu MR, Liu YC, Shaw B, Lin CP, Chen HW, Lin YF, Hoh DZ, Ke HM, Wang IF, Lu MY, Young EB, Millett J, Kirschner Lin YJ, Chen YL, Tsai ISJ*. An acidophilic fungus is integral to prey digestion in a carnivorous plant. Nature Microbiology. 2024 August, 1-16. (5-Year IF: 21.0).
Kao CT, Huang YW, Lin JC, Chou TP, Chen CH, Kuo SC, Huang CC, Li GJ, Yu JH, Chen YL, Xia K*, Lin YJ*. Induction of secondary cell wall biosynthesis genes and their regulators by melatonin in Glycine max. Plant Growth Regulation. 2024 May, 1-11. (5-Year IF: 3.4).
Chen YL*, Hsieh JW, Kuo SC, Kao CT, Tung CC, Yu JH, Chang TH, Ku C, Xie JB, Zhang DQ, Li QZ, Lin YJ*. Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus. Genome biology. 2024 April, 25 (1);85. (5-Year IF: 16.5). (*corresponding author)
Chen YL, Lin FW, Cheng KT, Chang CH, Hung SC, Efferth T, Chen YR*, XCP1 cleaves Pathogenesis-related protein 1 into CAPE9 for systemic immunity in Arabidopsis. Nature Communications. 2023 Aug, 14 (1), 4697. (5-Year IF: 16.1).
Chen YF, Lu HC, Hou PC, Lin YC, Aala WJ, Onoufriadis A, McGrath JA, Chen YL*, Hsu CK*. Plasma metabolomic profiling reflects the malnourished and chronic inflammatory state in recessive dystrophic epidermolysis bullosa. Journal of Dermatological Science. 2022 Aug, 107(2):82-88. (5-Year IF:4.3). (*corresponding author)
Tseng AJ, Tu TH, Hua WJ, Yeh H, Chen CJ, Lin ZH, Hsu WH, Chen YL, Hsu CC, Lin TY *. GMI, Ganoderma microsporum protein, suppresses cell mobility and increases temozolomide sensitivity through induction of Slug degradation in glioblastoma multiforme cells. International Journal of Biological Macromolecules. 2022 Oct, 219, 940-948. (5-Year IF:7.7)
Chen YL, Fan KT, Hung SC, Chen YR, The Role of Peptides Cleaved from Protein Precursors in Eliciting Plant Stress Reactions, New Phytologist. 2020 Mar, doi: 10.1111/nph.16241. (5-Year IF:10.2)
Chen YL, Chang WH, Lee CY, and Chen YR, An Improved Scoring Method for the Identification of Endogenous Peptides based on Mascot MS/MS Ion Search, Analyst. 2019 Apr, 23;144(9):3045-3055. (5-Year IF: 3.7)
Catinot J, Huang JB, Huang PY, Tseng MY, Chen YL, Gu SY, Lo WS, Wang LC, Chen YR, Zimmerli L. ETHYLENE RESPONSE FACTOR 96 positively regulates Arabidopsis resistance to necrotrophic pathogens by direct binding to GCC elements of jasmonate- and ethylene-responsive defence genes. Plant Cell Environ. 2015 Jun, PMID: 26038230. (5-Year IF: 7.6)
Chen YL, Lee CY, Cheng KT, Chang WH, Huang RN, Nam HG, Chen YR. Quantitative peptidomics study reveals that a wound-induced peptide from PR-1 regulates immune signaling in tomato. The Plant Cell. 2014 Oct, 26(10):4135-48. (5-Year IF:11.1)