2025
38. Dasom Choi, Sang Woo Lee, Dong‑Hwan Kim* (2025) Histone modification landscapes orchestrate differential expression of aliphatic and indolic glucosinolate genes in wounded Arabidopsis. Plant, Cell & Environment, Accepted.
37. Heewon Moon, Minkyu Park, Dong-Hwan Kim* (2025) Validation of DNA sequence required for the vernalization-mediated epigenetic suppression of floral repressor, BrFLC2 in Brassica rapa L. Submitted to Molecular Breeding.
36. Dong-Hwan Kim* (2025) Current understanding on vernalization-mediated floral transition process in Arabidopsis and several Brassica crop plants. Submitted to The Horticulture Journal. Accepted (2025/06/10). (연구년 논문)
35. Hyunjoon Kim, Peter Choi, Minkyu Park, Byung-Ho Hwang, Dong-Hwan Kim* (2025) Phenotypic, transcriptomic, and metabolic comparison between white cabbage (Brassica oleracea var. capitata) and savoy cabbage (Brassica oleracea var. sabauda). Horticulture, Environment, and Biotechnology. 67(1): , Accepted. DOI: 10.1007/s13580-025-00767-y
34. Dong-Hwan Kim* (2025) Epigenetic regulators and their involvement in the stress response of Arabidopsis plants: focused on DNA methylation, histone modifications, and histone remodeling. Journal of Plant Biology. 68(4): 245-266, https://doi.org/10.1007/s12374-025-09463-x
33. Sang Woo Lee&, Hyunjoon Kim&, Dong-Hwan Kim* (2025) Insertional mutations in RsFLC2 disrupt vernalization-induced intragenic looping and H3K27me3 enrichment in radish. Physiologia Plantarum, 177:e70314, https://doi.org/10.1111/ppl.70314, June, 6th, 2025
32. Heewon Moon, Hyunjoon Kim, Dong-Hwan Kim* (2025) A histone methyltransferase, EARLY FLOWERING IN SHORT DAYS (EFS) is required for reproductive organs development via histone H3K36 methylation in the oil-seed type Brassica rapa (B. rapa var. trilocularis) plant. Horticulture, Environment, and Biotechnology, 66(3):701-714, https://doi.org/10.1007/s13580-025-00681-3, https://rdcu.be/enSrF
31. Jun Kim, Minkyu Park, Dong-Hwan Kim* (2025) Transcriptome analysis revealed that MYB23 homolog (RsMYB23) is required for the trichome production in radish (Raphanus sativus L.). Horticulture, Environment, and Biotechnology, 66(4): pages 865–877, https://link.springer.com/article/10.1007/s13580-025-00697-9
30. Peter Choi, Adji Baskoro Dwi Nugroho, Heewon Moon, Dong-Hwan Kim* (2025) A 2-oxoglutarate-dependent dioxygenase, GLUCORAPHASATIN SYNTHASE 1 (GRS1) is a major determinant for different aliphatic glucosinolates between radish and Chinese cabbage. Plant Molecular Biology, 115, 1
2024
29. Dasom Choi, Seong-Hyeon Kim, Da-Min Choi, Heewon Moon, Jeong-Il Kim, Enamul Huq, Dong-Hwan Kim* (2024) ELONGATED HYPOCOTYL 5 interacts with HISTONE DEACETYLASE 9 to play a suppressive role in the glucosinolate biosynthesis in Arabidopsis. Plant Physiology, Oct. 3, 2024, 196(2): 1340-1355. https://academic.oup.com/plphys/article/196/2/1340/7675295?utm_source=authortollfreelink&utm_campaign=plphys&utm_medium=email&guestAccessKey=87a1504a-6ab7-4e63-b681-d34d9a7b3703
28. Jeonghwan Ahn, Minkyu Park, Jun Kim, Enamul Huq, Jongkee Kim, Dong-Hwan Kim* (2024) Physiological and transcriptomic analyses of healthy and Blossom-End-Rot (BER)-defected fruit of chili Pepper (Capsicum annuum L.). Horticulture, Environment, and Biotechnology, 65(6):971–980
27. Dasmo Choi, Dae Kwan Ko, Dong-Hwan Kim* (2024) Transcriptome analysis revealed that the Arabidopsis model plant invokes the activation of heat shock proteins and ER stress response against cesium stress. Plant Biotechnology Reports, June 2024, 18(3): 385-399. https://rdcu.be/dDJVR
26. Heewon Moon, Byoung-Ho Hwang, Minkyu Park, Enamul Huq, Dong-Hwan Kim* (2024) Time course transcriptomic analysis of cabbage (Brassica oleracea ssp. capitata L.) during vernalization. Journal of Plant Biology, 67(4):317 - 332, 10.1007/s12374-024-09430-y
25. Sang Woo Lee, Adji Baskoro Dwi Nugroho, Minkyu Park, Heewon Moon, Jun Kim, Dong-Hwan Kim* (2024) Identification of vernalization-related genes and COLD MEMORY ELEMENT (CME) required for vernalization response in radish (Raphanus sativus L.). Plant Molecular Biology, 114;5, Published online 16 Jan. 2024DOI: 10.1007/s11103-023-01412-x, https://rdcu.be/dwbbI
24. Yu-Jeong Kwon; Min Jeong Hong; Minkyu Park; Gah-Hyun Lim; Sungyul Chang; Dong-Hwan Kim; Jin-Baek Kim; Jundae Lee, Yeong Deuk Jo* (2024) Conserved and unique features of pepper FLOWERING LOCUS T-like genes revealed by comparative analysis among solanaceous crops. Scientia Horticulturae, 326:112710, 15 February 2024, https://doi.org/10.1016/j.scienta.2023.112710
23. Adji Baskoro Dwi Nugroho1, Peter Choi1, Aditya Nurmalita Pervitasari1, Narae Han1, Jongkee Kim1, and Dong-Hwan Kim1* (2024) Double haploid production using microspore culture is a useful breeding method in the modulation of glucosinolate contents in radishes (Raphanus sativus L.) Horticulture, Environment, and Biotechnology. 65(2):323 - 336. April, 2024, DOI: 10.1007/s13580-023-00558-3
22. Sang Woo Lee, Adji Baskoro Dwi Nugroho, Dong-Hwan Kim* (2024) Correlation analysis of glucosinolate profiles and GSL biosynthetic genes in radishes (Raphanus sativus L.). Horticulture, Environment, and Biotechnology, 65(1): 157 - 167, Jan, 2024, DOI: 10.1007/s13580-023-00555-6
2023
16. Dasom Choi, Jeong Hee Choi, Kee-Jai Park, Changhyun Kim, Jeongho Lim* and Dong-Hwan Kim* (2023) Transcriptomic analysis on effects of 1-methylcyclopropene (1-MCP) and ethylene treatment of kiwifruit (Actinidia chinensis) ripening. Frontiers in Plant Science, 13:1084997, 05 January 2023, https://doi.org/10.3389/fpls.2022.1084997
17. Jin A Kim&, Heewon Moon&, Hyang Suk Kim, Dasom Choi, Nan-Sun Kim, Juna Jang, Sang Woo Lee, Adji Baskoro Dwi Nugroho and Dong-Hwan Kim* (2023) Transcriptome and QTL mapping analyses of major QTL genes controlling glucosinolate contents in vegetable- and oilseed-type Brassica rapa plants. Frontiers in Plant Science, 13:1067508. 18 January 2023, DOI: 10.3389/fpls.2022.1067508
18. Adji Baskoro Dwi Nugroho, Sujeong Kim, Sang Woo Lee, Dong-Hwan Kim* (2023) Transcriptomic and epigenomic analyses revealed that polycomb repressive complex 2 (PRC2) regulates not only the developmental program but also stress-responsive metabolism in Brassica rapa. Frontiers in Plant Science, 14:1079218. 20 February 2023, doi: 10.3389/fpls.2023.1079218.
19. Sang Woo Lee, Dasom Choi, Heewon Moon, Sujeong Kim, Hajeong Kang, Inyup Paik, Enamul Huq, Dong-Hwan Kim* (2023) PHYTOCHROME-INTERACTING FACTORS (PIFs) are involved in starch degradation adjustment via inhibition of carbon metabolic regulator QUA-QUINE STARCH (QQS) in Arabidopsis. The Plant Journal, 114(1): 110-123, https://onlinelibrary.wiley.com/doi/10.1111/tpj.16124
20. Junghyun Kim, Yogendra Bordiya, Yanpeng Xi, Bo Zhao, Dong-Hwan Kim, Youngjae Pyo, Wei Zong, William A Ricci, and Sibum Sung* (2023) Warm temperature-triggered developmental reprogramming requires VIL1-mediated genome-wide H3K27me3 accumulation in Arabidopsis. Development, 150 (5): dev201343. https://doi.org/10.1242/dev.201343
21. Dong-Hwan Kim* (2023) Polycomb repressive complexes and their roles in plant developmental programs, particularly floral transition. Journal of Plant Biology, 66(5): 383 - 394, doi:10.1007/s12374-023-09397-2, Published: 29 April 2023
2022
9. A.N. pervitasari, A.B.D.Nugroho, W.H. Jung, D.-H. Kim*, J. Kim* (2022) An Efficient Agrobacterium tumefaciens-mediated transformation of Apical Meristem in Radish (Raphanus sativus L.) Using a Needle Perforation. Plant Cell, Tissue and Organ Culture, 148(2): 305–318, February, 2022. DOI 10.1007/s11240-021-02190-4 *Co-corresponding authors
10. S. Kim, J.A. Kim, H. Kang, D.-H. Kim* (2022) A premature stop codon in BrFLC2 transcript results in early flowering in oilseed-type Brassica rapa Plants. Plant Molecular Biology. 108(3):241-255, Feb. 2022, DOI 10.1007/s11103-021-01231-y
11. H. Kang, A.B.D. Nugroho, M. Park, J.A. Kim, S.W. Lee, H. Moon, D. Choi, S. Kim, D.-H. Kim* (2022) Vernalization regulates flowering genes and modulates glucosinolates biosynthesis in Chinese cabbage. Journal of Plant Biology, 65(2):157–173, April, 2022, DOI 10.1007/s12374-021-09344-z
12. D.-H. Kim* (2022) Epigenetic repression and resetting of a floral repressor, FLC, in the life cycle of winter-annual Arabidopsis. Plant Biotechnology Reports, 16(2):133 - 143, April, 2022, https://doi.org/10.1007/s11816-021-00717-x
13. D.-H. Kim*, S.W. Lee, H. Moon, D. Choi, S. Kim, H. Kang, J. Kim, G. Choi, E. Huq (2022) ABI3 and PIF1-mediated regulation of GIG1 enhances seed germination by detoxification of methylglyoxal in Arabidopsis. The Plant Journal, 110(6): 1578-1591. *Corresponding author, http://doi.org/10.1111/tpj.15755 , June 25, 2022 off-line published.
14. Y. Pyo, H. Moon, A.B.D. Nugroho, S.W. Yang, I.L. Jung*, D.-H. Kim* (2022) Transcriptome analysis revealed that jasmonic acid biosynthesis/signaling is involved in plant response to Strontium stress. Ecotoxicology and Environmental Safety, 237(1):113552. April, 2022, online-published, https://doi.org/10.1016/j.ecoenv.2022.113552,
15. A. B. D. Nugroho, J.-H. Jeong, B.-H. Hwang, J. Kim, E. Huq, D.-H. Kim* (2022) Textural quality and nutritional differences of Chinese cabbage (Brassica rapa ssp. pekinensis) under soil fertigation and hydroponics cultivation systems. AMA, Agricultural Mechanization in Asia, Africa, and Latin America, 53(6): 8449-8462.
2021
5. W. Zong, B. Zhao, Y. Xi, Y. Bordiya, H. Mun, N. Cerda, D.-H. Kim, S. Sung* (2021) DEK Domain-Containing Proteins Control Flowering Time in Arabidopsis. New Phytologist, 231 (1): 182–192, https://doi.org/10.1111/nph.17366.
6. N-S Kim, S Kim, J-S Jo, J-G Lee, S-I Lee, D-H Kim*, J-A Kim* (2021) The BrGI Circadian Clock Gene is Involved in the Regulation of Glucosinolates in Chinese Cabbage. Genes, 12(11), 1664, On-line published:2021. 10. 22. *Co-corresponding authors, https://doi.org/10.3390/genes12111664
7. A.N. pervitasari, J.-H. Kim, K. Cho, D. Choi, S.K. Yun, D. Kim, D.-H. Kim, J. Kim* (2021) Effects of Hydrocooling and 1-MCP Treatment on the Quality Changes of Peach (Prunus persica (L.) Batsch) Fruit during Storage, Horticultural Science and Technology, 39(6):769-780.
8. A.B.D.Nugroho, S. Lee, A.N.Pervitasari, H. Moon, D. Choi, J. Kim, D.-H. Kim* (2021) Transcriptomic and metabolic analyses revealed the modulatory effect of vernalization on glucosinolate metabolism in radish (Raphanus sativus L.) Scientific Reports, 11(1):24023, On-line published: 2021.12.15, https://doi.org/10.1038/s41598-021-03557-5
2020
2. A. Nugroho, N. Han, A. Pervitasari, D.-H. Kim*, and Jongkee Kim* (2020) Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development. Plant Mol. Biol. 102(1):171–184 . *Co-corresponding authors, Published:2020.02.01
3. D.-H. Kim* (2020) Current understanding on flowering pathways in plants: focusing on vernalization pathway in Arabidopsis and several vegetable crop plants. Horticulture, Environment, and Biotechnology, 61(2): 209-227. Published: 2020.02.21
4. Y. Xi, S.-R. Park, D.-H. Kim, E.-D. Kim, S. Sung* (2020) Transcriptome and epigenome analyses of vernalization in Arabidopsis thaliana. The Plant Journal. 103(4):1490-1502, Published:2020.05.15.
2019
1. D.-H. Kim*, W-H. Kang*, S-I, Yeom, B-D. Kim (2019) Isolation of putative pepper defense-related genes against the pathogen Phytophthora capsici using suppression subtractive hybridization/macroarray and RNA-sequencing analyses. Horticulture, Environment, and Biotechnology, 60(5): 685-699. *Corresponding authors,
*Patent 출원
발명의 명칭 : BrCLF(Brassica rapa CURLY LEAF) 유전자를 포함하는 폴리콤(Polycomb) 유전자의 염기서열교정을 통한 십자화과 작물의 글루코시놀레이트 함량 증진 방법
출 원 인 : 중앙대학교 산학협력단
발 명 자 : 김동환ㆍ앗지 바스코로
출 원 번 호 : 10-2023-0036076 (출원일 : 2023-03-20)
발명의 명칭 : 배추속 식물의 개화억제인자인 BrFLC 유전자 내 RY 모티프의 기능상실을 유도하는 가이드 RNA 및 이의 용도
출 원 인 : 중앙대학교 산학협력단
발 명 자 : 김동환ㆍ문희원
출 원 번 호 : 10-2025-0019684 (출원일 : 2025-02-14)
D.-H. Kim, Y. Xi, S. Sung (2017) Modular function of long noncoding RNA, COLDAIR, in the vernalization response. pLoS Genetics, 13(7), e1006939.
D.-H. Kim and S. Sung (2017) Vernalization-triggered intragenic loop formation by long noncoding RNAs. Developmental cell, 40, 302–312.
D.-H. Kim and S. Sung (2017) The binding specificity of PHD-finger domain of VIN3 moderates vernalization response. Plant Physiology, 173: 1258-1268.
E.D. Kim, Y. Xiong, Y. Pyo, D.-H. Kim, B. Kang, S. Sung (2017) Spatio-temporal analysis of coding and non-coding transcripts during maize endosperm development. Scientific Reports, 7:3838.
N. Sharma, R. Xin, D.-H. Kim, S. Sung, T. Lange, E. Huq (2016) NFL promotes flowering specifically under short-day in Arabidopsis. Development, 143(4): 682-690
YD Jo, Y. Choi, D.H. Kim, BD Kim, BC Kang (2014) Extensive structural variations between mitochondrial genomes of CMS and normal peppers (Capsicum annuum L.) revealed by complete nucleotide sequencing. BMC Genomics, 15:561
D.-H. Kim and S. Sung (2014) Polycomb-mediated gene silencing in Arabidopsis thaliana. Mol. Cells, 37(12): 841-850.
D.-H. Kim and S. Sung (2014) Genetic and Epigenetic Mechanisms Underlying Vernalization Response. The Arabidopsis Book (TAB), 12:e0171. doi: 10.1199/tab.0171. eCollection 2014.
S. Lim, J. Park, N. Lee, J. Jeong, S. Toh, A. Watanabe, J. Kim, H. Kang, D.H. Kim, N. Kawakami, G. Choi (2013)ABA-INSENSITIVE3, ABA-INSENSITIVE5, and DELLAs Interact to Activate the Expression of SOMNUS and Other High-Temperature-Inducible Genes in Imbibed Seeds in Arabidopsis. Plant Cell, 25: 4863-4878.
D.-H. Kim, and S. Sung (2013) Temperature and Plant Development; Vernalization: Competence to flower provided by winter (Chapter 4), WILEY Blackwell, PP79-96, ISBN 978-1-118-30820-2.
D.-H. Kim and S. Sung (2013) The vernalization response in Arabidopsis is coordinated through a VIN3 and FLC gene family regulatory network. Plant Cell, 25:454-469.
Y. Hyun, H. Yun, K. Park, H. Ohr, O. Lee, D.-H. Kim, S. Sung and Y. Choi (2013) The catalytic subunit of Arabidopsis DNA polymerase α ensures stable maintenance of histone modification. Development, 140(1): 156-166.
D.-H. Kim and S. Sung (2012) Environmentally Coordinated Epigenetic Silencing of FLC by Proteins and Long Noncoding RNA Components. Curr. Opin. Plant Biol. 15 (1): 51-56.
D.-H. Kim, S. Sung (2010) The Plant homeo domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5. Proc. Natl. Acad. Sci. USA (PNAS), 107: 17029-17034.
D.-H. Kim, B.R. Zografos, S. Sung (2010) Vernalization-mediated VIN3 induction overcomes the LIKE-HETEROCHROMATIN PROTEIN 1/Polycomb Repression Complex 2 -mediated epigenetic repression. Plant Physiology, 154(2) 949-957.
D.-H. Kim and S. Sung (2010) Role of VIN3-like 2 in facultative photoperiodic flowering response in Arabidopsis. Plant Signal Behav. 5 (12): 1672-1673.
D.-H. Kim, B.R. Zografos, S. Sung (2010) Mechanisms underlying vernalization-mediated VIN3 induction in Arabidopsis. Plant Signal Behav. 5 (11): 1457-1459.
D.P. Horvath, S. Sung, D.-H. Kim, W. Chao, J. Anderson (2010) Characterization, expression and function of DORMANCY ASSOCIATED MADS-BOX genes from leafy spurge. Plant Mol. Biol., 73(1-2):169-79.
D.-H. Kim, M.R. Doyle, S. Sung, R.M. Amasino (2009) VERNALIZATION: WINTER AND THE TIMING OF FLOWERING IN PLANTS. Annu. Rev. Cell Dev. Biol., 25: 277-299.
D.H. Kim, S. Yamaguchi, S. Lim, E. Oh, J. Park, A. Hanada, Y. Kamiya, G. Choi (2008) SOMNUS, a CCCH-type Zinc Finger Protein in Arabidopsis, Negatively Regulates Light-Dependent Seed germination Downstream of PIL5. Plant Cell, 20:1260-1277.
D.H.Kim, M. S. Han, H. W. Cho, D. S. Kim, H.-J. Kim, B.-D. Kim (2008) Molecular Cloning of the CaLFY, putative ortholog of pepper FLO/LFY. Mol. Breeding, 22:443-453.
D.H. Kim, J.G. Kang, and B.D. Kim. (2007) Isolation and characterization of the cytoplasmic male sterility-associated orf456 gene of chili pepper (Capsicumannuum L.). Plant Mol. Biol., 63: 519-532.
J.H. Han, H.S. Choi, D.H. Kim, H.R. Lee, and B.D. Kim (2006) Biological, physical and cytological properties of pepper mottle virus-SNU1 and its RT-PCR detection. Plant Pathol. J., 22: 155-160.
D.S. Kim, D.H. Kim, J.H. Yoo, and B.D. Kim (2006) Cleaved amplified polymorphic sequence and amplified fragment length polymorphism markers linked to the fertility restorer gene in chili pepper (Capsicum annuumL.) Mol. Cells, 21: 135-140.
D.H. Kim, M.S. Han, H.W. Cho, Y.D. Jo, M.C. Cho, and B.D. Kim (2006) Molecular cloning of a pepper gene that is homologous to SELF-PRUNING. Mol. Cells., 22: 89-96.
D.H. Kim and B. D. Kim (2006) The organization of mitochondrial atp6 gene region in male fertile and CMS lines of pepper (Capsicum annuum L.). Curr. Genet., 49: 59-67.
D.H. Kim and B.D. Kim (2005) Development of SCAR markers for early identification of cytoplasmic male sterility genotype in chili pepper (Capsicum annuum L.). Mol. Cells, 20: 416-422.
D.H. Kim, J.G. Kang, S.J. Kim, and B.D. Kim. (2001) Identification of coxⅡ and atp6 regions as associated to CMS in Capsicum annuum by using RFLP and long accurate PCR. J. Kor. Soc. Hort. Sci., 42 (2): 121-127.