held in conjunction with ACM BCB 2023, the 14-th ACM Conference on  Bioinformatics, Computational Biology and Health Informatics

 September 3-6, 2023, Houston, TX

https://acm-bcb.org/

CALL FOR PAPERS

SUBMISSION DEADLINE EXTENDED: July 8, 2023

Due to the availability of high-throughput platforms (e.g. next generation sequencing, microarray and mass spectrometry) and clinical diagnostic tools (e.g. medical imaging), a recent trend in Bioinformatics and Biomedicine is the ever-increasing production of experimental and clinical data.

Considering the complex analysis pipelines often used in biomedical research, there is a main bottleneck that involves the storage, integration, and analysis of experimental data, as well as their correlation and integration with publicly available data banks.

While parallel computing may offer the computational power and the storage to face this overwhelming availability of data, Cloud Computing is a key technology to hide the complexity of computing infrastructures, to reduce the cost of the data analysis task, and especially to change the overall model of biomedical research and health provision.

High-performance infrastructures may offer the huge data storage needed to store experimental and biomedical data, while parallel computing can be used for basic pre-processing (e.g. parallel BLAST, mpiBLAST) and for more advanced analysis (e.g. parallel data mining). In such a scenario, novel parallel architectures (e.g. CELL processors, GPUs, FPGA, hybrid CPU/FPGA) coupled with emerging programming models may overcome the limits posed by conventional computers to the mining and exploration of large amounts of data.

On the other hand, these technologies yet require great investments by biomedical and clinical institutions and are based on a traditional model where users often need to be aware and face different management problems, such as hardware and software management, data storage, software ownership, and prohibitive costs (different professional-level applications in the biomedical domain have an high starting cost that prevent many small laboratories to use them).

The Cloud Computing technology, and its variations such as Serverless Computing, that is able to offer scalable costs and increased reachability, availability and easiness of application use, and possibility to enforce collaboration among scientists, is already changing the business model in different sectors and now it has begun to be adopted in the bioinformatics and biomedical domains. However, many problems remain to be solved, such as availability and safety of the data, privacy-related issues, availability of software platforms for rapid deployment, and the execution and billing of biomedical applications.

Edge Computing is another recent paradigm that starts to be used in bioinformatics and machine learning. The workshop will also consider bioinformatics and biomedical algorithms and applications developed using Edge Computing.

Objectives and Goals:

The goal of ParBio is to bring together scientists in the fields of high performance computing, computational biology and medicine to discuss, among the others, the parallel implementation of bioinformatics and biomedical applications and problems and opportunities of moving biomedical and health applications on the cloud or on the edge. Moreover, machine learning and big data analytics issues in healthcare and bioinformatics will be addressed. Finally, the workshop will discuss parallel and distributed management and analysis of molecular and clinical data, that more and more need to be integrated and analyzed in a joint way.

TOPICS OF INTEREST 

The main themes and research topics of interest will regard the applications of parallel and high performance computing to biology and medicine, as well as Cloud Computing opportunities and problems for bioinformatics and biomedical applications, including:

- Data Science in Bioinformatics and Health Informatics

- Big data analytics in healthcare and bioinformatics

- Data Mining in Bioinformatics and Health Informatics

- Deep Learning in Bioinformatics and Health Informatics

- Sentiment Analysis in bioinformatics and healthcare 

- Affective Computing in bioinformatics and healthcare

- Text mining of biomedical literature and clinical notes

- Healthcare data quality, privacy, and security

- High performance computing for computational biology

- Data integration and ontologies in biology and medicine 

- Large scale biological and biomedical databases

- Parallel bioinformatics algorithms

- Parallel visualization and exploration of omics and clinical data

- Parallel visualization and analysis of biomedical images

- Computing environments for large scale collaboration

- Scientific workflows in bioinformatics and biomedicine

- Emerging architectures and programming models for bioinformatics and biomedicine

- Parallel processing of bio-signals

- Modeling and simulation in healthcare and medicine

- Cloud Computing for bioinformatics and biomedicine 

- Cloud Computing for health systems 

- Services for bioinformatics and biomedicine

- Internet of Things in bioinformatics and healthcare

- Peer-To-Peer Computing for bioinformatics and biomedicine 

- Edge Computing for bioinformatics

- Serverless Computing for bioinformatics

PROGRAM

The workshop will take place on September 3, 2023 (Schedule To Be Announced). The program is not available yet.

PAPER SUBMISSION, REGISTRATION AND PUBLICATION

ParBio welcomes original submissions that have not been published and that are not under review by another conference or journal. You can submit a Full Paper (8-10 pages) or a Short Paper (4-5 pages). Submitted manuscripts should comply with the requirements delineated on the ACM Master Article Template website (https://www.acm.org/publications/proceedings-template) on 8.5 x 11 inch paper. All submissions will be evaluated on their originality, technical soundness, significance, presentation, and interest to the conference attendees.

Submission implies the willingness of at least one of the authors to register and present the work associated with the paper submitted. ParBio’s technical program committee will review all submitted papers. All accepted papers of registered authors will be included in the workshop proceedings published by ACM digital libraries. Authors of selected papers may be invited to adapt their papers for their publication in several journals. Authors of accepted papers will be required to submit an online ACM Copyright Form. Authors will be contacted by ACM requesting this information. (Note that ACM copyright permissions are directly compatible with NIH and similar open access policies, see http://authors.acm.org/main.html for more information). 

Authors should submit papers using the ParBio2023 Easy Chair Installation: https://easychair.org/conferences/?conf=parbio2023.

IMPORTANT DATES

(all submissions close 11:59pm Anywhere On Earth [AOE])

Paper submissions due: June 9, 2023 July 8, 2023 (EXTENDED)

Notifications sent to authors: July 12, 2023

Camera-ready papers due: July 15, 2023

JOURNAL SPECIAL ISSUE

After of the workshop, we plan to invite the best papers of the workshop for a special issue of an international journal.

WORKSHOP ORGANIZERS

Giuseppe Agapito, University Magna Graecia of Catanzaro, Italy

Mario Cannataro, University Magna Graecia of Catanzaro, Italy

Wes Lloyd, School of Engineering and Technology, University of Washington - Tacoma, Washington

PROGRAM COMMITTEE (TO BE CONFIRMED)

- Pratul K. Agarwal, Oak Ridge National Laboratory, USA

- Luca Barillaro, University Magna Graecia of Catanzaro, Italy

- Lorella Bottino, University Magna Graecia of Catanzaro, Italy

- Barbara Calabrese, University Magna Graecia of Catanzaro, Italy

- Umit Catalyurek, The Ohio State University, USA

- Jake Y. Chen, Indiana University - Purdue University Indianapolis (IUPUI), USA

- Pietro Cinaglia, University Magna Graecia of Catanzaro, Italy

- Tim Clark, Harvard Medical School, USA

- Werner Dubitzky, University of Ulster, UK

- Ling Hong Hung, University of Washington – Tacoma, USA

- Ananth Y. Grama, Purdue University, USA

- Kamer Kaya, The Ohio State University, USA

- Ilaria Lazzaro, University Magna Graecia of Catanzaro, Italy

- Maria Chiara Martinis, University Magna Graecia of Catanzaro, Italy

- Marianna Milano, University Magna Graecia of Catanzaro, Italy

- Salvatore Orlando, University of Venezia, Italy

- Maria S. Perez, Universidad Politecnica de Madrid, Madrid, Spain

- Shruti Ramesh, Micrsosoft, Redmond, WA USA

- Ileana Scarpino, University Magna Graecia of Catanzaro, Italy

- Marzia Settino, University Magna Graecia of Catanzaro, Italy

- Richard Sinnott, University of Melbourne, Melbourne, Australia

- Roberto Tagliaferri, University of Salerno, Italy

- Paolo Trunfio, University of Calabria, Italy

- Albert Zomaya, University of Sydney, Australia

- Chiara Zucco, University Magna Graecia of Catanzaro, Italy