Fidanoğlu, B.T., Özkılınç, H. Evidence for putative mitochondrial long non-coding RNAs and HEG-derived transcripts in Monilinia laxa from long-read transcriptomics. Mycol Progress 25, 41 (2026). https://doi.org/10.1007/s11557-026-02153-z 

Arslan, K., Durak, M. R., & Özkılınç, H. (2025). Towards Uncovering New Insights into Respiratory Inhibitor Fungicide Resistance in Molinia Fungal Plant Pathogens: Insights from a Mitogenomic Approach. Turkish Journal of Agriculture-Food Science and Technology, 13(6), 1577-1589.  doi.org/10.24925/turjaf.v13i6.1577-1589.7703 

Fidanoğlu, B. T., Keresteci, N., & Özkılınç, H. (2025). A Model System for Understanding Host–Pathogen Relationships Through In Vitro Host Mimicry. European Journal of Plant Pathology, 1-12.   doi.org/10.1007/s10658-025-03030-3 

Öncel, S., & Özkılınç, H. (2025). Discovering the dynamics of peach fruit mycobiome throughout fruit development season by high-throughput sequencing. Scientific Reports, 15(1), 8969. doi.org/10.1038/s41598-025-93090-6  

Durak, M. R., & Özkılınç, H. (2025). Transposable elements in genomic architecture of Monilinia fungal phytopathogens and TE-driven DMI-resistance adaptation. Mobile DNA, 16(1), 8.  doi.org/10.1186/s13100-025-00343-2

Özkılınç, H., Fidanoğlu, B. T., Öncel, S., Kurtuluş, E., & Kadıoğlu, İ. E. (2025). Resistance evolution and local adaptation of Venturia inaequalis to old and new generation SDHI fungicides. Fungal Biology, 129(2), 101543.  doi.org/10.1016/j.funbio.2025.101543 

Arslan, K., Ozkilinc, H. MicroRNA cross-talk between Monilinia fungal pathogens and peach host. Phytoparasitica 52, 29 (2024).  doi.org/10.1007/s12600-024-01131-z 

Muhammed R Durak, Hilal Ozkilinc, Genome-Wide Discovery of Structural Variants Reveals Distinct Variant Dynamics for Two Closely Related Monilinia Species. Genome Biology and Evolution, Volume 15, Issue 6, June 2023, evad085 doi.org/10.1093/gbe/evad085

Fidanoğlu, B.T., Mestav, B. & Özkılınç, H. A case study of the effect of temperature on aggressiveness in the Monilinia-peach pathosystem. Eur J Plant Pathol (2023). doi.org/10.1007/s10658-023-02681-4 

Ece Silan & Hilal Ozkilinc '' Phylogenetic divergences in brown rot fungal pathogens of Monilinia species from a worldwide collection: inferences based on the nuclear versus mitochondrial genes'', BMC Ecology and Evolution, 22(1), 1-12 (2022). https://doi.org/10.1186/s12862-022-02079-6

Muhammed R Durak, Kubra Arslan, Ece Silan, Gozde Yildiz, Hilal Ozkilinc, "A novel approach for in vitro fungicide screening and the sensitivity of Monilinia populations from peach orchards in Turkey to respiratory inhibitor fungicides", Crop Protection (2021). https://doi.org/10.1016/j.cropro.2021.105688

Hakan Guven, Sydney E Everhart, Rita Milvia De Miccolis Angelini, Hilal Ozkilinc, "Genetic diversity assessments of brown rot pathogen Monilinia fructicola based on the six simple sequence repeat loci", Journal of Plant Diseases and Protection (2021). https://doi.org/10.1007/s41348-021-00504-4

Gozde Yildiz & Hilal Ozkilinc, "Pan-mitogenomics approach discovers diversity and dynamism in the prominent brown rot fungal pathogens", Frontiers in Microbiology, 897 (2021). doi: 10.3389/fmicb.2021.647989

Gozde Yildiz & Hilal Ozkilinc, ''First characterization of the complete mitochondrial genome of fungal plant-pathogen Monilinia laxa which represents the mobile intron rich structure", Scientific Reports (2020) doi.org/10.1038/s41598-020-70611-z

H. Ozkilinc, G. Yildiz, E. Silan, K. Arslan, H. Guven, H. H. Altinok, R. Altindag, M. R. Durak, ''Species diversity, mating type assays and aggressiveness patterns of Monilinia pathogens causing brown rot of peach fruit in Turkey''.European Journal of Plant Pathology 102 (2020)dx.doi.org/10.1007/s10658-020-02040-7