Homework excercises

Alanine tripeptide in water 

1. Alanine tripeptide in water pdb file 

2. d-AFED python script for tripeptide in water 

                                      Chignolin in water

                                      1.  Chignolin pdb , Chignolin pdb2 

                                      2. Chignolin TAMD python script  

                                      3. Reweighting script