Publications

In Preparation/Submitted:

1. *Thewes, D., Lenhart, H., Kerimoglu, O.. Adapting satellite-derived particulate inorganic matter for use in coastal ecosystem models, using in-situ measurements. In prep.

2. van Velzen, E, Wollrab, S., Kerimoglu, O., Gaedke, U., Grossart, H.P., Kasada, M., Klip, H.C.L., Moorthi, S., Shatwell, T., Thongthaisong, P., Prowe, A.E.F. Flexibility in aquatic food web structure: linking scales and approaches. In prep.

3. Kerimoglu, O., Hintz, N.H., Lücken, L., Blasius, B., Böttcher, L., Bunse, C., Dittmar, T., Heyerhoff, B., Mori, C., Striebel, M., Simon, M. (2022) Growth, organic matter release, aggregation and recycling during a diatom bloom: A model-based analysis of a mesocosm experiment. Submitted, preprint at bioRxiv. https://doi.org/10.1101/2022.05.18.492269

Published/Accepted:

1. van Leeuwen, S.M., Lenhart, H.-J., Prins, T.C., Blauw, A., Desmit, X., Fernand, L., Friedland, R., Kerimoglu, O., Lacroix, G.,  Van Der Linden, A., Lefebvre, A., Van Der Molen, J.,  Plus, M., Baroni, I.R., Silva, T., Stegert, C., Troost, T. A., Vilmin, L. (2023) Deriving pre-eutrophic conditions from an ensemble model approach for the North-West European Seas. Frontiers in Marine Science 10:1129951. https://doi.org/10.3389/fmars.2023.1129951

2. Singer, A., Bijleveld, A.I., Hahner, F., Holthuijsen, S.J., Hubert, K., Kerimoglu, O., Kleine Schaars, L., Kröncke, I., Lettmann, K.A., Rittweg, T., Scheiffarth, G., van der Veer, H.W., Wurpts, A. (2023) Long-term response of coastal macrofauna communities to de-eutrophication and environmental habitat changes (1980s versus 2018). Frontiers in Marine Science 9:963325. https://doi.org/10.3389/fmars.2022.963325

3. Kerimoglu, O., Pahlow, M., Anugerahanti, P., Smith, S.L. FABM-NflexPD 2.0 (2023) an instantaneous acclimation approach for computationally efficient modelling of carbon and nitrogen cycles. Geoscientific Model Development 16, 95–108. https://doi.org/10.5194/gmd-16-95-2023

4. Tilstone, G.H., Land, P.E., Pardo, S., Kerimoglu, O., Van der Zande, D. (2023) Threshold indicators of primary production in the north-east Atlantic for assessing environmental disturbances using 21 years of satellite ocean colour. Science of the Total Environment 854, 158757. https://doi.org/10.1016/j.scitotenv.2022.158757 

5. Acevedo-Trejos, E., Cadier, M., Chakraborty, S., Chen, B., Cheung, S.Y., Grigoratou, M., Guill, C., Hassenrück, C., Kerimoglu, O., Klauschies, T., Lindemann, C., Palacz, A., Ryabov, A., Scotti, M., Smith, S.L., Våge, S., Prowe, F. (2022) Modelling approaches for capturing plankton diversity (MODIV), their societal applications and data needs. Frontiers in Marine Science 9: 975414. https://doi.org/10.3389/fmars.2022.975414

6. Hillebrand H., Di Carvalho, J.A., Dajka, J.-C., Dürselen, C.-D., Kerimoglu, O., Kuczynski, L., Rönn, L., Ryabov, A. (2022) Temporal declines in Wadden Sea phytoplankton cell volumes observed within and across species. Limnology and Oceanography, 67, 468–481. https://doi.org/10.1002/lno.12005

7. Kerimoglu, O., Anugerahanti, P., Smith, S.L. (2021) FABM-NflexPD 1.0: assessing an instantaneous acclimation approach for modeling phytoplankton growth. Geoscientific Model Development 14, 6025–6047: https://doi.org/10.5194/gmd-14-6025-2021

8. *Anugerahanti, P., Kerimoglu, O., Smith, S.L. (2021) Enhancing Ocean Biogeochemical Models with Phytoplankton Variable Composition. Frontiers in Marine Science 8:675428. https://doi.org/10.3389/fmars.2021.675428

9. *Stegert, C., Lenhart, H.-J., Blauw, A., Friedland, R., Leujak, W, Kerimoglu, O. (2021) Evaluating uncertainties in reconstructing the pre-eutrophic state of the North Sea as basis for eutrophication assessment. Frontiers in Marine Science 8:637483. https://doi.org/10.3389/fmars.2021.637483

10. Friedland, R., Macias, D., Cossarini, G., Daewel, U., Estournel, C., Garcia-Gorriz, E., Grizzetti B., Grégoire, M., Gustafson, B., Kalaroni, S., Kerimoglu, O., Lazzari, P., Lenhart, H., Lessin, G., Maljutenko, I., Miladinova, S., Muller-Karulis, B., Neumann, T., Parn, O., Pätsch, J., Piroddi, C., Raudsepp U., Schrumm, C., Stegert, C., Stips, A., Tsiaras, K., Ulses, C., Vandenbulcke, L. (2021) Effects of nutrient management scenarios on marine eutrophication indicators: a Pan-European, multi-model assessment in support of the Marine Strategy Framework Directive. Frontiers in Marine Science 8:596126. https://doi.org/10.3389/fmars.2021.596126

11. Ryabov, A., Kerimoglu, O., Litchman, E., Olenina, I., Roselli L., Besset, A., Stanca, E., Blasius, B. (2021) Shape matters: the relationship between cell geometry and diversity in phytoplankton. Ecology Letters, 24: 847–8611. https://doi.org/10.1111/ele.13680

12. Krishna, S., Ulloa, H., Kerimoglu, O., Minaudo, C., Annevile, O., Wüest, A.J. (2021) Model-based data analysis of the effect of winter mixing on primary production in a lake under oligotrophication. Ecological Modelling, 440, 109491. https://doi.org/10.1016/j.ecolmodel.2020.109401

13. Kerimoglu, O., Voynova, Y., Chegini, F., Brix, H., Callies, U.,Hofmeister, R., Klingbeil, K., Schrum, C., van Beusekom, J.E.E. (2020). Interactive impacts of meteorological and hydrological conditions on the physical and biogeochemical structure of a coastal system. Biogeosciences 17, 5097–5127. https://doi.org/10.5194/bg-17-5097-2020

14. Chegini, F., Holtermann, P., Kerimoglu, O., Klingbeil, K., Becker, M., Kreus, M., Klingbeil, K., Gräwe, U., Winter, C., Burchard, H. (2020) Processes of stratification and de‐stratification during an extreme river discharge event in the German Bight ROFI. Journal of Geophysical Research: Oceans. https://doi.org/10.1029/2019JC015987

15. van Beusekom J.E.E., Carstensen J., Dolch T., Grage A., Hofmeister R., Lenhart H., Kerimoglu, O., Kolbe K., Pätsch J., Rick J., Rönn L. and Ruiter H. (2019) Wadden Sea Eutrophication: Long-Term Trends and Regional Differences. Front. Mar. Sci. 6:370. https://doi.org/10.3389/fmars.2019.00370

16. Slavik, K., Lemmen, C., Zhang, W., Kerimoglu, O., Klingbeil, K.,Wirtz, K.W. (2019) The large scale impact of off-shore windfarm structures on pelagic primary production in the southern North Sea. Hydrobiologia 845:35–53. https://doi.org/10.1007/s10750-018-3653-5

17. Kerimoglu, O., Große, F., Kreus, M., Lenhart, H.-J., van Beusekom, J.E.E. (2018) A model-based projection of historical state of a coastal ecosystem: relevance of phytoplankton stoichiometry. Science of the Total Environment 639: 1311–1323. https://doi.org/10.1016/j.scitotenv.2018.05.215

18. Bruce L., Frassl, M., Arhonditsis, G., Gal, G., Hamilton, D., Hanson, P., Hetherington, A., Melack, J., Read, J., Rinke, K., Rigosi, A., Trolle, D., Winslow, L., Adrian, R., Ayala-Zamora, A.I., Bocaniov, S., Boehrer, B., Boon, C., Brookes, J., Bueche, T., Busch, B., Copetti, D., Cortés, A., de Eyto, E., Eliott, A., Gallina, N., Gilboa, Y., Guyennon, N.D., Huang, L., Kerimoglu, O., Lenters, J., MacIntyre, S., Makler-Pick, V., McBride, C., Moreira, S., Özkundakci, D., Plotti, M., Rueda, F., Rusak, J., Samal, N., Schmid, M., Shatwell, T., Snorthheim, C., Soulignac, F., Valerio, G., van der Linden, L., Vetter, M., Vinçon-Leite, B., Wang, J., Weber, M., Wickramaratne, C., Woolway, R., Yao, H., Hipsey, M. (2018) A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental Modelling & Software 102: 274-291. https://doi.org/10.1016/j.envsoft.2017.11.016

19. Nasermoaddeli, M. H., Lemmen, C., Kösters, F., Stigge, G., Kerimoglu, O., Burchard, H., Klingbeil, K., Hofmeister, R., Kreus, M., Wirtz, K. W., Kösters, F. (2018) A model study on the large-scale effect of macrofauna on the suspended sediment concentration in a shallow shelf sea. Estuarine, Coastal and Shelf Science 211: 62-76. https://doi.org/10.1016/j.ecss.2017.11.002

20. Lemmen, C., Hofmeister, R., Klingbeil, K., Nasermoaddeli, M. H., Kerimoglu, O., Burchard, H., Wirtz, K. W. (2018) Modular System for Shelves and Coasts (MOSSCO v1.0) – a flexible and multi-component framework for coupled coastal ocean ecosystem modelling. Geoscientific Model Development 11: 915–935. https://doi.org/10.5194/gmd-11-915-2018

21. Kerimoglu, O., Hofmeister, R., Maerz, J., Riethmüller, R., Wirtz, K.W. (2017) The acclimative biogeochemical model of the southern North Sea. Biogeosciences 14: 4499–4531. https://doi.org/10.5194/bg-14-4499-2017

22. *Taherzadeh, N., Kerimoglu, O., Wirtz, K.W. (2017) Can We Predict Phytoplankton Community Size Structure Using Size Scalings of Eco-Physiological traits? Ecological Modelling 360: 279-289. https://doi.org/10.1016/j.ecolmodel.2017.07.008

23. Kerimoglu, O., Jacquet, S., Vinçon-Leite, B., Lemaire, B.J., Rimet, F.,Soulignac, F., Trévisan, D., Anneville, O. (2017) Modelling the plankton groups of the deep, peri-alpine Lake Bourget. Ecological Modelling 359: 415–433. https://doi.org/10.1016/j.ecolmodel.2017.06.005

24. Wirtz, K.W., Kerimoglu, O. (2016) Autotrophic Stoichiometry Emerging from Optimality and Variable Co-limitation. Frontiers in Marine Research 4:131. https://doi.org/10.3389/fevo.2016.00131

25. Straile, D., Kerimoglu, O., Peeters, F. (2015) Trophic mismatch requires seasonal heterogeneity of warming. Ecology 96: 2794-2805. https://doi.org/10.1890/14-0839.1

26. Anneville, Domaizon I., Kerimoglu, O., Rimet, F. and Jacquet, S. (2015) Blue-green algae in a “greenhouse century”? New insights from field data on climate change impacts on cyanobacteria abundance. Ecosystems 18: 441-458. https://doi.org/10.1007/s10021-014-9837-6

27. Jacquet, S., Kerimoglu, O., Rimet, F., Paolini, G., Anneville, O. (2014) Cyanobacterial bloom termination: the disappearance of Planktothrix rubescens from Lake Bourget (France) after restoration. Freshwater Biology 59: 2472–2487. https://doi.org/10.1111/fwb.12444

28. Kerimoglu, O., Straile, D., Peeters, F. (2014) Modeling the spring blooms of ciliates in a deep lake. Hydrobiologia 731: 173-189. https://doi.org/10.1007/s10750-013-1551-4

29. Kerimoglu, O. and Rinke, K. (2013) Stratification dynamics in a shallow reservoir under different hydrometeorological scenarios and operational strategies. Water Resources Research 49: 7518-7527. https://doi.org/10.1002/2013WR013520

30. Kerimoglu, O., Straile, D., Peeters, F. (2013) Seasonal, inter-annual and long term variation in the relative importance of top-down vs. bottom-up limitation of primary production. Oikos 122: 223-234. https://doi.org/10.1111/j.1600-0706.2012.20603.x

31. Peeters, F., Kerimoglu, O., Straile, D.(2013) Implications of seasonal mixing for phytoplankton production and bloom development. Theoretical Ecology 6: 115-129. https://doi.org/10.1007/s12080-012-0164-2

32. Kerimoglu, O., Straile, D., Peeters, F. (2012) Role of phytoplankton cell size on the competition for nutrients and light in incompletely mixed systems. Journal of Theoretical Biology 300: 330-343. https://doi.org/10.1016/j.jtbi.2012.01.044

33. Straile, D., Kerimoglu, O., Peeters, F., Jochimsen, M. C., Kümmerlin, R., Rinke, K., und Rothhaupt, K.-O. (2010) Effects of a half a millennium winter on a deep lake – a shape of things to come? Global Change Biology 16: 2844- 2856. https://doi.org/10.1111/j.1365-2486.2009.02158.x