I. Research Papers:
1. Mallick, P., Maity, S., Mondal, R., Roy, T., Meitei, P.M., Saxena, S., Sahu, B.S., Chakrabarti, O.#, and Chakrabarti, S. The impact of ERUPR on mitochondrial integrity mediated by PDK4. Cell Death & Disease, 2025 Jul 29;16(1):573.
2. Bose, S., Das, S., Maity, S., Raychaudhuri, D., Banerjee, T., Paul, M., Mukhopadhyay, A., Chakrabarti, O. and Chakrabarti, S. Androgen receptor plays critical role in regulating cervical cancer cell migration. Molecular and Cellular Endocrinology, 2025 May 21:606:112583.
3. Sengupta, D., Sharma, D., Das, R.K., Das, P., Halder, M., Rai, P. and Chakrabarti, O., 2024. Pioneering the Photoactive Relevance of Quinazolinone–Fullereropyrrolidine Nanohybrids To Address Chemotherapeutic Resistance in Cancer. ACS Medicinal Chemistry Letters. 2024, Jun 24;15(7):1118-26.
4. Islam SR, Maity S, Chakrabarti O, Manna SK. Protocol for analyzing energy metabolic pathway dependency in human liver cancer cell lines. STAR protocols, 2024 Jun 21;5(2):102964.
5. Das P, Chakrabarti O. ISGylation of DRP1 closely balances other post-translational modifications to mediate mitochondrial fission. Cell Death & Disease, 2024, Mar 2;15(3):184.
6. Das R, Maity S, Das P, Kamal IM, Chakrabarti S, Chakrabarti O. CMT2A-linked MFN2 mutation, T206I promotes mitochondrial hyperfusion and predisposes cells towards mitophagy. Mitochondrion, 2024, Jan 1;74:101825.
7. Das R., Das S., Chakrabarti S., Chakrabarti O. CMT2A-linked mitochondrial hyperfusion-driving mutant MFN2 perturbs ER-mitochondrial associations and Ca2+ homeostasis. Biology of the Cell, 2022, Nov;114(11):309-19.
8. Das R., Kamal IM, Das S, Chakrabarti S and Chakrabarti O. MITOL-mediated DRP1 ubiquitylation and degradation promotes mitochondrial hyperfusion in CMT2A-linked MFN2 mutant. Journal of Cell Science, 2022, Jan 15;135(2):jcs257808.
9. Mookherjee D, Das S, Mukherjee R, Bera M, Jana SC, Chakrabarti S and Chakrabarti O. RETREG1/FAM134B mediated autophagosomal degradation of AMFR/GP78 and OPA1—a dual organellar turnover mechanism. Autophagy, 2020, Jul 2:1-24.
10. Kaul Z, Mookherjee D, Das S, Chatterjee D, Chakrabarti S and Chakrabarti O. Loss of tumor susceptibility gene 101 (TSG101) perturbs endoplasmic reticulum structure and function. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 2020, May 15:118741.
11. Mookherjee D, Majumder P, Mukherjee R, Chatterjee D, Kaul Z, Das S, Sougrat R, Chakrabarti S and Chakrabarti O. Cytosolic aggregates in presence of non-translocated proteins perturb endoplasmic reticulum structure and dynamics. Traffic, 2019, 20(12), p:943-960.
12. Mukherjee R, Bhattacharya A, Sau A, Basu S, Chakrabarti S, Chakrabarti O. Calmodulin regulates MGRN1-GP78 interaction mediated ubiquitin proteasomal degradation system. FASEB J., 2019, 33 (2), 1927-1945. Epub 2018 Sep 19.
13. Mukherjee R, Majumder P and Chakrabarti O. MGRN1-mediated ubiquitination of α-tubulin regulates microtubule dynamics and intracellular transport. Traffic, 2017, 18 (12), 791-807. Epub 2017 Oct 4.
14. Kaul Z and Chakrabarti O. Tumor susceptibility gene 101, TSG101, regulates predisposition towards apoptosis via ESCRT machinery accessory proteins. Molecular Biology of the Cell, 2017, 28 (15), 2106-2122. Epub 2017 May 24.
15. Mukherjee R and Chakrabarti O. Regulation of Mitofusin1 by Mahogunin Ring Finger-1 and the proteasome modulates mitochondrial fusion. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 2016, 1863 (12), 3065-3083. Epub 2016 Oct 4.
16. Bera K, Sau A, Mondal P, Mukherjee R, Mookherjee D, Metya A, Kundu AK, Mandal D, Satpati B, Chakrabarti O and Basu S. Metamorphosis of Ruthenium-Doped Carbon Dots: In Search of the Origin of Photoluminescence and Beyond. Chemistry of Materials, 2016, 28 (20):7404-7413.
17. Srivastava D, Mukherjee R, Mookherjee D and Chakrabarti O. Mahogunin-mediated regulation of Gαi localisation during mitosis and its effect on spindle positioning. Biochemistry and Cell Biology, 2016, 94 (4), 359-369. Epub 2016 Apr 21.
18. Mukherjee R. and Chakrabarti O. Ubiquitin mediated regulation of the E3 ligase GP78 by Mahogunin in trans affects mitochondrial homeostasis. Journal of Cell Science, 2015, 129 (4), 757-73. Epub 2016 Jan 7.
19. Majumder P and Chakrabarti O. Mahogunin regulates fusion between amphisomes/MVBs and lysosomes via ubiquitination of TSG101. Cell Death and Disease, 2015, 6, e1970.
20. Theeya N, Ta A, Das S, Mandal RS, Chakrabarti O, Chakrabarti S, Ghosh AN and Das S. An inducible and secreted eukaryote-like serine/threonine kinase of Salmonella enterica serovar Typhi promotes intracellular survival and pathogenesis. Infection and Immunity, 2015, 83 (2), 522-533. Epub 2014 Nov 17.
21. Roy K, Chakrabarti O and Mukhopadhyay D. Interaction of Grb2 SH3 domain with UVRAG in an Alzheimer's disease-like scenario. Biochemistry and Cell Biology, 2014, 92 (3), 219-225. Epub 2014 Apr 24.
22. Srivastava D. and Chakrabarti O. Mahogunin-mediated α-tubulin ubiquitination via noncanonical K6 linkage regulates microtubule stability and mitotic spindle orientation. Cell Death and Disease, 2014, 5, e1064.
23. Roy K, Raychaudhuri M, Chakrabarti O and Mukhopadhyay D. Growth Factor Receptor-Bound Protein 2 Promotes Autophagic Removal of Amyloid-β Protein Precursor Intracellular Domain Overload in Neuronal Cells. Journal of Alzheimer’s Disease, 2014, 38 (4), 881-895.
24. Chattopadhyay S, Basak T, Nayak MK, Bhardwaj G, Mukherjee A., Bhowmick R, Sengupta S, Chakrabarti O, Chatterjee NS and Chawla-Sarkar M. Identification of cellular calcium binding protein calmodulin as a regulator of rotavirus A infection during comparative proteomic study. PLoS One, 2013, 8 (2), e56655. Epub 2013 Feb 20.
25. Chakrabarti O#, Rane NS and Hegde RS. Cytosolic aggregates perturb the degradation of non-translocated secretory and membrane proteins. Molecular Biology of the Cell, 2011, 22 (10), 1625-1637 (2011). Epub 2011 Mar 16.
26. Emerman A, Zhang Z, Chakrabarti O and Hegde RS. Compartment-restricted biotinylation reveals novel features of prion protein metabolism in vivo. Molecular Biology of the Cell, 2010, 21 (24), 4325-4337 (2010). Epub 2010 Oct 27.
27. Rane NS, Chakrabarti O, Feigenbaum L and Hegde RS. Signal sequence insufficiency contributes to neurodegeneration caused by transmembrane Prion protein. Journal of Cell Biology, 2010, 188 (4), 515-526. Epub 2010 Feb 15.
28. Chakrabarti O and Hegde RS. Functional depletion of Mahogunin by cytosolically exposed prion protein contributes to neurodegeneration. Cell, 2009, 137 (6), 1136-1147.
29. Rane NS, Kang S-W, Chakrabarti O, Feigenbaum L and Hegde RS. Reduced translocation of nascent prion protein during ER stress contributes to neurodegeneration. Developmental Cell, 2008, 15 (3), 359-370.
30. Veeraraghavalu K, Subbaiah VK, Srivastava S, Chakrabarti O, Syal R and Krishna S. Complementation of human papillomavirus type 16 E6 and E7 by Jagged1-specific Notch1-phosphatidylinositol 3-kinase signaling involves pleiotropic oncogenic functions independent of CBF1;Su(H);Lag-1 activation. Journal of Virology, 2005, 79 (12), 7889-7898.
31. Chakrabarti O, Veeraraghavalu K, Tergaonkar V, Liu Y, Androphy EJ, Stanley MA and Krishna S. Human papillomavirus type 16 E6 amino acid 83 variants enhance E6-mediated MAPK signaling and differentially regulate tumorigenesis by notch signaling and oncogenic Ras. Journal of Virology, 2004, 78 (11), 5934-5945.
32. Rangarajan A, Syal R, Selvarajah S, Chakrabarti O, Sarin A and Krishna S. Activated Notch1 signaling cooperates with papillomavirus oncogenes in transformation and generates resistance to apoptosis on matrix withdrawal through PKB/Akt. Virology, 2001, 286 (1), 23-30.
II. Reviews/Guidelines:
33. Chatterjee D, Das P, Chakrabarti O. Mitochondrial epigenetics regulating inflammation in cancer and aging. Frontiers Cell and Developmental Biology. 2022 10: 929708.
34. Mallick P, Maity S, Chakrabarti O#, Chakrabarti S. Spatial interconnectivity and temporal dynamicity of ER stress mediated cellular responses: Role of systems biology and multi-omics analyses. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research. 2022, Jan 12:119210.
35. Chatterjee D, Chakrabarti O. Role of stress granules in modulating senescence and promoting cancer progression: special emphasis on glioma. International Journal of Cancer. 2022, Feb 15;150(4):551-61. Epub 2021 Sep 25.
36. Maity S. and Chakrabarti O. Mitochondrial protein import as a quality control sensor. Biology of the Cell. 2021, Sep;113(9):375-400.
37. Klionsky et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy, 2021, Feb 8;1-382.
38. Das P and Chakrabarti O. Mitochondrial DNA in innate immune responses against infectious diseases. Biochemical Society Transactions, 2020, Dec 18;48(6):2823-38.
39. Das R and Chakrabarti O. Mitochondrial hyperfusion: a friend or a foe. Biochemical Society Transactions, 2020, Apr 29;48(2):631-44.
40. Kaul Z and Chakrabarti O. Endosomal sorting complexes required for ESCRTing cells toward death during neurogenesis, neurodevelopment and neurodegeneration. Traffic, 2018, 19 (7), 485-495. Epub 2018 Apr 18.
41. Majumder P and Chakrabarti O. Lysosomal Quality Control in Prion Diseases. Molecular Neurobiology, 2018, 55 (3), 2631-2644. Epub 2017 Apr 18.
42. Mukherjee R, Das A, Chakrabarti S and Chakrabarti O. Calcium dependent regulation of protein ubiquitination – interplay between E3 ligases and calcium binding proteins. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 2017, 1864 (7), 1227-1235. Epub 2017 Mar 8.
43. Majumder P and Chakrabarti O. ESCRTs and associated proteins in lysosomal fusion with endosomes and autophagosomes. Biochemistry and Cell Biology, 2016, 94 (5), 443-450. Epub 2016 Jul 22.
44. Srivastava D and Chakrabarti O. Ubiquitin in regulation of spindle apparatus and its positioning: implications in development and disease. Biochemistry and Cell Biology, 2015, 93 (4), 273-281. Epub 2015 May 13.
45. Mukherjee R. and Chakrabarti O. Mitochondrial quality control: decommissioning power plants in neurodegenerative diseases. Scientific World Journal, 2013, 2013:180759. (2013).
46. Chakrabarti O, Ashok A and Hegde RS. Prion protein biosynthesis and its emerging role in neurodegeneration. Trends in Biochemical Sciences, 2009, 34 (6), 287-295. Epub 2009 May 15.
47. Chakrabarti O and Krishna S. Molecular interactions of “high risk” human papillomaviruses E6 and E7 oncoproteins: implications in tumour progression. Journal of Biosciences, 2003, 28 (3), 337-348.
III. BookChapters:
48. Maity S and Chakrabarti O. Functional coupling of the Endoplasmic Reticulum and ubiquitin proteasome system in a Springer publication entitled “Ubiquitin Proteasome System in CNS Neurodegenerative Diseases”; edited by Dr. Sarika Singh (In Press).
49. Chakrabarti O and Hegde, RS. Trafficking of the cellular prion protein and its role in neurodegeneration, in an Elsevier publication entitled “Protein Trafficking in the Neuron”; edited by Dr. Andrew Bean. (Academic Press, 2006).
#Co-corresponding author, Corresponding author