Nucleic Acid Structure Tutorials

Chapter 3. A and B Conformations

A RNA tutorial

B DNA tutorial

Unnatural DNA base pair

Chapter 4. Z DNA Triplexes Quadruplexes

Z DNA

BZ DNA junction

Triplexes

tRNA

Quadruplex

iMotif

Holliday Junction

RNA tetraloop

RNA_pseudoknots

Chapter 7. Topology of DNA, Supercoiling

TopoII Inhibitor

mono and dinucleosome structures

Chapter 8. Non-covalent binders

ethidium bromide

triostin

metallointercalators

distamycin

polyamide dimers

Quadruplex DNA drug interaction

Chapter 9. DNA bending

TATA binding protein

CAP protein - 1cgp

Integration host factor IHF

Nucleosome

Chapter 13. Nucleotide Biosynthesis

Thymidylate synthetase

Ribonucleotide reductase

Chapter 14. DNA to RNA to protein

Taq Polymerase

T7 RNA Polymerase

Inhibition of DNA polymerase by aphidicholin

polymerase eta synthesizing opposite thymine dimer

Peptide synthesis on ribosome

tetracycline inhibition of ribosome

tRNA

aminoacyltRNA synthetase

DNA Ligase inhibitor

RNA replication

Epigenetics Tet oxidase

Chapter 16. SELEX

Malachite green binding aptamer

Ribozyme

DNAzyme

Chapter 17. Genetic Engineering

Kinase

Ligase

Restriction enzymes

Chapter 18. Protein Engineering

Phage display

Chapter 19. DNA photochemistry

CPD

(6-4) photoproduct

Dewar photoproduct

Spore photoproduct

Psoralen monoadduct tutorial

Chapter 21. Radiomimetic DNA damage

Bleomycin tutorial

esperamycin

neocarzinostatin

Chapter 22. Covalent binders

aaf

aflatoxin

anthramycin

bpde

cisplatin

duocarmycin

mitomycin

Chapter 23. Protein DNA interactions

Helix Turn Helix Motif Cro repressor

Leucine Zipper Motif

Zinc Finger Motif

Beta Sheet Motif

TALES

A DNA binding SASP protein

Z DNA binding protein

Chapter 24. DNA damage repair

Ada protein

AlkB oxygenase

AGT suicide repair

CPD photolyase

(6-4) photolyase

Spore photoproduct lyase

T4 pyrimidine dimer glycosylase

Uracil glycosylase

MutM

MutY

Human Pol eta synthesizing past a cpd

Chapter 25. RNA chemistry and biochemistry

RNase A

Intron

Hammerhead Ribozyme

DNAzyme Ligase

tetracycline riboswitch

Chapter 27. DNA nanoconstruction, nanomachines, nanocomputing

Tensegrity Triangle

Holliday Junction

16 helix bundle

Chapter 28. Gene control agents

Locked nucleic acids

Peptide nucleic acids

Argonaut siRNA

Crispr Cas9

Chem485 Class Tutorials 2017