ST. McQuade, S. Almatrudi, N. Khoudari, et al. "Energy-Saving Control of Freeway Traffic: Field Experiments and Results" (in review, 2026)
X. Yang, N. Khoudari, A. Yan, Y. Geng, X. Liu, A. Volkening, Y. Zhou. "Coordinated cell division and growth drive meristem notch formation in Ceratopteris gametophytes" (in review, 2026)
N. Khoudari, J. Nardini, A. Volkening. "Quantifying topological features and irregularities in zebrafish patterns using the sweeping-plane filtration". SIAM Journal on Applied Dynamical Systems, 25(3), 1981-2021, 2026. link, , arXiv:2509.11023
N. Khoudari, R. Ramadan, M. Ross, B. Seibold. "Macroscopic Manifestations of Traffic Waves in Microscopic Models" (to appear in SEMA SIMAI Springer Series: Traffic and Autonomy, 2026, arXiv:2310.05357)
J. Carpio, S. Almatrudi, N. Khoudari, Z. Fu, A. Bayen, J. Lee, B. Seibold. "Validation and Calibration of Energy Models with Real Vehicle Data from Chassis Dynamometer Experiments''. Institute of Transportation Studies, 2025. link, arXiv:2503.21057
N. Khoudari, S. Almatrudi, R. Ramadan, J. Carpio, M. Yao, K. Butts, J. Lee, A. Bayen, B. Seibold. "Reducing Detailed Vehicle Energy Dynamics to Physics-like models" (arXiv:2310.06297)
JW Lee, ...N Khoudari, et al. "Traffic control via connected and automated vehicles (cavs): An open-road field experiment with 100 cavs". IEEE Control Systems, 45 (1), 28-60, 2025. link
M. Abbas, ... N. Khoudari et al. "Mathematical Challenges and Opportunities for Autonomous Vehicles". Institute of Pure and Applied Mathematics, White Paper, 2023 (link)
N. Khoudari, B. Seibold. "Multiscale Properties of Traffic Flow: The Macroscopic Impact of Traffic Waves". In: Booß-Bavnbek, B., Hesselbjerg Christensen, J., Richardson, K., Vallès Codina, O. (eds) Multiplicity of Time Scales in Complex Systems. Mathematics Online First Collections. Springer, Cham, 2022. link
JW Lee, ... N Khoudari, et al. "Integrated Framework of Vehicle Dynamics, Instabilities, Energy Models, and Sparse Flow Smoothing Controllers". DI-CPS’21: Proceedings of the Workshop on Data-Driven and Intelligent Cyber-Physical Systems: 41-47, 2021.
N. Khoudari. "From Microscopic to Macroscopic Scales: Traffic Waves and Sparse Control". PhD Dissertation. Temple University, 2024.
N. Khoudari. "Approximation of non-holomorphic maps". Master’s Thesis http://hdl.handle.net/10938/21401. American University of Beirut, 2018.
Zebrafish skin patterns: Zebrafish are known for their wild-type striped patterns which arise from the interactions between different types of pigment cells. In many cases, those stripes are broken or mutated, reflecting messiness and variability in the biology which could be tied to genetic or environmental condition. I develop new methods that employ approaches in Topological Data Analysis to classify and quantify the spatial and temporal variations of such patterns.
*TDA barcode (black bars: connected components; grey bars: loops; arrows: persistent) of sweeping from top to bottom across a cylinder binary image of a zebrafish skin pattern.
Shapes in fern gametophyte development: In the fern Ceratopteris richardii, cell behavior leads the tissue to transform from round to heart-shaped, with meristem cells at the heart notch having notable regenerative properties. The mechanisms behind the emergence of meristem shapes and their regeneration after ablation are not clear but are of interest from wound healing perspective. In collaboration with Yun Zhou's lab (Botany and Plant Pathology, Purdue), I analyze data collected from experiments and develop mechanistic and data-driven models to understand the driving mechanism for the emergence of such shapes.
*Data-driven evolution of cell trajectory graph (growth and division) in a fern.
I am a researcher under CIRCLES: The Congestion Impacts Reduction via CAV-in-the-loop Lagrangian Energy Smoothing, a multi-campus DOE funded project aiming at improving traffic flow and energy savings in a mixed human-autonomous setup. This project is a collaboration among UC Berkeley, Vanderbilt University, University of Arizona, Temple University, Rutgers University-Camden, in partnership with the Tennessee Department of Transportation, Nissan, Toyota North America, and General Motors. The latest experiment was held in Nashville on I-24 where data of driving trajectories and velocities was collected from an advanced pole camera system installed by Tennessee department of Transportation in collaboration with Vanderbilt University. This experiment is the first of its kind and executed on the largest scale ever where 100 Connected-Autonomous-Vehicles were deployed into traffic and data of vehicle trajectories over a testbed of 4 miles for a bulk of 4 hours during rush hours was collected for five consecutive days.
*Group photo of all the researchers who participated in the traffic experiment on I-24 (Nashville, November 2022)
*A Berkeley News presentation following the conclusion of the traffic experiment showing how AI smooths traffic flow.
Traffic Modeling and Control: Existing traffic models are widely used in multiple frameworks, most prominently, microscopic vehicle-scale occurring on the scale of seconds and macroscopic city-scale flow patterns that develop over the scale of hours. Practical applications usually employ either one or the other framework, and there is little overlap in the respective research communities. One aspect of my work is to develop mathematical techniques to bridge the two scales. Of particular importance are models that can capture dynamic instabilities and traveling traffic waves called phantom jams. Such models are particularly challenging to analyze, as many papers on PDE models explicitly exclude the unstable situation. Starting from existing models, my work particularly addresses the averaging of scales and the understanding of macroscopic manifestations of microscopic traffic waves with the relevance of dampening those waves in the presence of sparse control in light of the energy demand of traffic at the vehicle-scale, waves-scale, and city scale.
Energy Modeling and Optimization: The purpose of introducing sparse control into traffic is the ability to effectively dampen waves, but more importantly, to decrease the overall energy consumption and mitigate the effects of climate change from the transportation industry. Existing energy models used in the literature are simplistic, ignoring many complicated factors that contribute to energy consumption, and are not capable of bridging between micro and macro scales. We develop a model reduction pipeline from high fidelity software to vehicle specific polynomial energy models that can allow us to estimate fuel rates instantaneously in time during simulations and without using hysteresis effects. Our simplified model was developed for six different vehicle types and validated on EPA drive cycles and is used in the training and design of controlled vehicles and in optimization problems to find optimal fuel trajectories.