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List of publications on the period 2019-2024:
Team members underlined, C corresponding authors, *equal contribution, highlight in blue international collaborators, Phd students in red.
1. Dobhal, S., Hugouvieux-Cotte-Pattat, N., Arizala, D., Boluk Sari, G., Chuang, S. C., Alvarez, A. M., & Arif, MC. (2024). Dickeya ananae sp. nov., pectinolytic bacterium isolated from pineapple (Ananas comosus). bioRxiv. https://doi.org/10.1101/2024.10.29.620964
2. Nicolai, X., Liang, Y., Ruaudel, F., Narajczyk, M., Czajkowski, R., Rusconi, F., Arthur, M., & Shevchik, V. EC. (2024). Inner membrane protein OutB is covalently attached to peptidoglycan in the γ-proteobacterium Dickeya dadantii. bioRxiv. https://doi.org/10.1101/2024.09.03.610988
3. Royet, K., Kergoat, L., Lutz, S., Oriol, C., Parisot, N., Schori, C., Ahrens, C. H., Rodrigue, A., & Gueguen, EC . (2024). High-throughput Tn-seq screens identify both known and novel Pseudomonas putida KT2440 genes involved in metal resistance. bioRxiv. https://doi.org/10.1101/2024.04.12.589247
4. Hugouvieux-Cotte-Pattat, NC., Brochier-Armanet, C., Flandrois, J. P., Briolay, J., & Reverchon, S. (2024). Description of a new genus of the Pectobacteriaceae family, Prodigiosinella gen. nov. including the species Prodigiosinella aquatilis sp. nov. Systematic and Applied Microbiology. https://doi.org/10.1016/j.syapm.2024.126497
5. Cayrol, B., Arnoldi, I., Novak, V., Epis, S., Brilli, M., Rahbé, Y., Uzest, M., & Gabrieli, P. (2024). Development of the piercing mouth during the last molt of disease-transmitting aphids and mosquitoes as revealed by synchrotron X-ray microtomography. Entomologia Generalis. https://doi.org/10.1127/entomologia/2024/2475
6. K. Robic, E. Munier, G. Effantin, J. Lachat, D. Naquin, E. Gueguen, D. FaureC, Dissimilar gene repertoires of Dickeya solani involved in the colonization of lesions and roots of Solanum tuberosum. Frontiers in Plant Science 14 (2023). https://doi.org/10.3389/fpls.2023.1154110
7. Galvão Ferrarini, M., Vallier, A., Vincent-Monégat, C., Dell'aglio, E., Gillet, B., Hughes, S., Hurtado, O., Condemine, G., Zaidman-Remy, A., Rebello, R., Parisot, Nc. & Heddi, Ac. (2023). Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp. Microbiome. https://doi.org/10.1186/s40168-023-01714-8
8. Brual, T., Effantin, G.*, Baltenneck, J., Attaiech, L., Grosbois, C., Royer, M., Cigna J, Faure D, Hugouvieux-Cotte-Pattat N, Gueguen E.C (2023). A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria. PLoS Genetics. https://doi.org/10.1371/journal.pgen.1010725
9. Hugouvieux-Cotte-Pattat, N.C, Pédron, J., & Van Gijsegem, F. (2023). Insight into biodiversity of the recently rearranged genus Dickeya. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2023.1168480
10. Ben Moussa, H., Pédron, J., Hugouvieux-Cotte-Pattat, N., & Barny, M. A.C (2023). P. aquaticum and P. quasiaquaticum are two species with a peculiar evolution within the genus Pectobacterium, suggesting an adaptation to a new environmental niche. Environmental Microbiology. https://doi.org/10.1111/1462-2920.16479
11. Condemine, Gc., & Le Derout, B. (2022). Identification of new Dickeya dadantii virulence factors secreted by the type 2 secretion system. PLoS ONE. https://doi.org/10.1371/journal.pone.0265075
12. Zhang, S., Gu, S., Rycroft, P., Ruaudel, F., Delolme, F., Robert, X., Ballut, L., Pickersgill, R.W. & Shevchik, V. E.C (2022). Scaffolding protein GspB/OutB facilitates assembly of the Dickeya dadantii type 2 secretion system by anchoring the outer membrane secretin pore to the inner membrane and to the peptidoglycan cell wall. mBio. https://doi.org/10.1128/mbio.00253-22
13. Job, V., Gomez-Valero, L., Renier, A., Rusniok, C., Bouillot, S., Chenal-Francisque, V., Gueguen, E., Adrait, A., Robert-Genthon, M., Jeannot, K., Panchev, P., Elsen, S., Fauvarque, M-O., Couté, Y., Buchrieser, C., Attrée, I. (2022). Genomic erosion and horizontal gene transfer shape functional differences of the ExlA toxin in Pseudomonas spp. iScience. https://doi.org/10.1016/j.isci.2022.104596
14. Morinière, L., Mirabel, L., Gueguen, E., Bertolla, Fc. (2022) A comprehensive overview of the genes and functions required for lettuce infection by the hemibiotrophic phytopathogen Xanthomonas hortorum pv. vitians. mSystems 7: e0129021. https://doi.org/10.1128/msystems.01290-21
15. Martis Badiadka, S., Droux, M., Nasser, W., Reverchon, S., & Meyer, Sc. (2022). Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii. Journal of Biological Chemistry. https://doi.org/10.1016/j.jbc.2021.101446
16. Jacobsen, T., Dazzoni, R., Renault, M., Bardiaux, B., Nilges, M., Shevchik, V. E., & Izadi-Pruneyre N. (2022). Secondary structure and 1H, 15N & 13C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system. Biomolecular NMR Assignments. https://doi.org/10.1007/s12104-022-10085-4
17. Hugouvieux-Cotte-Pattat, N., Royer, M.*, Gueguen, E., Le Guen, P., Süssmuth, R., Reverchon, S., et al. (2022). Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15889
18. Przepiora, T., Figaj, D., Lewandowska, A., Czajkowski, R., Fikowicz-Krosko, J., Hugouvieux-Cotte-Pattat, N., & Skorko-Glonek, J.C (2022). The periplasmic oxidoreductase DsbA is required for virulence of the phytopathogen Dickeya solani. International Journal of Molecular Sciences. https://doi.org/10.3390/ijms23020697
19. Pineau, C., Guschinskaya, N., Gonçalves, I. R., Ruaudel, F., Robert, X., Gouet, P., Ballut, L., Shevchik, V.E.C (2021). Structure–function analysis of pectate lyase Pel3 reveals essential facets of protein recognition by the bacterial type 2 secretion system. Journal of Biological Chemistry. https://doi.org/10.1016/j.jbc.2021.100305
20. Morinière, L., Lecomte, S., Gueguen, E., Bertolla, Fc. (2021) In vitro exploration of the Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes. Microbial Genomics. https://doi.org/10.1099/mgen.0.000546
21. Hugouvieux-Cotte-Pattat, N.C, & van Gijsegem, F. (2021). Diversity within the Dickeya zeae complex, identification of Dickeya zeae and Dickeya oryzae members, proposal of the novel species Dickeya parazeae sp. nov. International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijsem.0.005059
22. Li, X., Sivignon, C., da Silva, P., Rahbé, Y., Queneau, Y., & Moebs-Sanchez, S. (2021). Design and synthesis of 3,5-hetero diesters of 4-deoxy quinic acid and their aphicidal activity against Acyrthosiphon pisum. Tetrahedron. https://doi.org/10.1016/j.tet.2021.131982
23. Martis Badiadka, S., Droux, M., Deboudard, F., Nasser, W., Meyer, S., & Reverchon, Sc. (2021). Separation and quantification of 2-Keto-3-deoxy-gluconate (KDG), a major metabolite in pectin and alginate degradation pathways. Analytical Biochemistry. https://doi.org/10.1016/j.ab.2020.114061
24. Hugouvieux-Cotte-Pattat, N.C, Jacot-des-Combes, C., Briolay, J., & Pritchard, L. (2021). Proposal for the creation of a new genus Musicola gen. nov., reclassification of Dickeya paradisiaca (Samson et al. 2005) as Musicola paradisiaca comb. nov. and description of a new species Musicola keenii sp. nov. International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijsem.0.005037
25. Reuter, A., Hilpert, C., Dedieu-Berne, A., Lematre, S., Gueguen, E., Launay, G., Bigot, S., Lesterlin, C.c (2021) Targeted-antibacterial-plasmids (TAPs) combining conjugation and CRISPR/Cas systems achieve strain-specific antibacterial activity. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab126
26. Cayron, J., Effantin, G., Prudent, E., & Rodrigue, A. (2020). Original sequence divergence among Pseudomonas putida CadRs drive specificity. Research in Microbiology. https://doi.org/10.1016/j.resmic.2019.11.001
27. Deshoux, M., Masson, V., Arafah, K., Voisin, S., Guschinskaya, N., van Munster, M., et al. (2020). Cuticular structure proteomics in the pea aphid Acyrthosiphon pisum reveals new plant virus receptor candidates at the tip of maxillary stylets. Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.9b00851
28. Kassa-Laouar, M., Mechakra, A., Rodrigue, A., Meghnous, O., Bentellis, A., & Rached, O. (2020). Antioxidative enzyme responses to antimony stress of Serratia marcescens – an endophytic bacterium of Hedysarum pallidum roots. Polish Journal of Environmental Studies. https://doi.org/10.15244/pjoes/100494
29. Hugouvieux-Cotte-Pattat, N.C, Brochier-Armanet, C., Flandrois, J. P., & Reverchon, S. (2020). Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum). International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijsem.0.004306
30. Guschinskaya, N., Ressnikoff, D., Arafah, K., Voisin, S., Bulet, P., Uzest, M., & Rahbé, Y.C (2020). Insect mouthpart transcriptome unveils extension of cuticular protein repertoire and complex organization. iScience. https://doi.org/10.1016/j.isci.2020.100828
31. Rispe, C., Legeai, F., Nabity, P., Fernández, R., Arora, A., Baa-Puyoulet, P., et al. (2020). The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. BMC Biology. https://doi.org/10.1186/s12915-020-00820-5
32. Czajkowski, R.C, Fikowicz-Krosko, J., Maciag, T., Rabalski, L., Czaplewska, P., Jafra, S., Richert, M., Krychowiak-Maśnicka, M., & Hugouvieux-Cotte-Pattat, N. (2020). Genome-wide identification of Dickeya solani transcriptional units up-regulated in response to plant tissues from a crop-host Solanum tuberosum and a weed-host Solanum dulcamara. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2020.580330
33. Potrykus, M., Decorosi, F., Perkowska, I., Viti, C., Mengoni, A., Hugouvieux-Cotte-Pattat, N., & Lojkowska, E.C (2020). The metabolic shift in highly and weakly virulent Dickeya solani strains is more affected by temperature than by mutations in genes encoding global virulence regulators. FEMS Microbial Ecology. https://doi.org/10.1093/femsec/fiaa023
34. Przepióra, T., Figaj, D., Radzińska, M., Apanowicz, M., Sieradzka, M., Ambroziak, M., Hugouvieux-Cotte-Pattat, N., Lojkowska, E., & Skorko-Glonek, J.C (2020). Effects of stressful physico-chemical factors on the fitness of the plant pathogenic bacterium Dickeya solani. European Journal of Plant Pathology. https://doi.org/10.1007/s10658-019-01902-z
35. Soumahoro, S., Ouattara, H., Droux, M., Nasser, W., Niamke, S., & Reverchon, Sc. (2019). Acetic acid bacteria (AAB) involved in cocoa fermentation from Ivory Coast: Species diversity and performance in acetic acid production. Journal of Food Science and Technology. https://doi.org/10.1007/s13197-019-04226-2
36. Liu, L., Gueguen-Chaignon, V.*, Gonçalves, I. R.*, Rascle, C., Rigault, M., Dellagi, A., Loisel, E., Poussereau, N., Rodrigue, A., Terradot, L. & Condemine Gc. (2019). A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species. Nature Communications. https://doi.org/10.1038/s41467-019-12826-x
37. Royet, K., Parisot, N., Rodrigue, A., Gueguen, E.c, & Condemine, G. (2019). Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants. Molecular Plant Pathology. https://doi.org/10.1111/mpp.12754
38. Hugouvieux-Cotte-Pattat, N.C, Jacot-Des-Combes, C., & Briolay, J. (2019). Dickeya lacustris sp. nov., a water-living pectinolytic bacterium isolated from lakes in France. International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijsem.0.003208
39. Hugouvieux-Cotte-Pattat, N.C, Jacot-Des-Combes, C., & Briolay, J. (2019). Genomic characterization of a pectinolytic isolate of Serratia oryzae isolated from lake water. Journal of Genomics. https://doi.org/10.7150/jgen.38365
2-2-2 Reviews and book chapters
40. Dubois, Q., Brual, T., Oriol, C., Mandin, P., Condemine, G., & Gueguen, EC. (2024). Function and mechanism of action of the small regulatory RNA ArcZ in Enterobacterales. RNA. https://doi.org/10.1261/rna.080010.124
41. Toth, I.C, Barny, M. A., Brurberg, M., Condemine, G., Czajkowski, R., Elphinstone, J. G., Helias, V., Johnson, S. B., Moleleki, L. N., Pirhonen, M., Rossman, S., Tsror, L., van der Waals, J. E., van der Wolf, J. M., van Gijsegem, F., & Yedidia, I. (2021). Pectobacterium and Dickeya: Environment to disease development. In Plant Diseases Caused by Dickeya and Pectobacterium Species. Springer International Publishing, pp. 39–84. https://doi.org/10.1007/978-3-030-61459-1_3
42. Van Gijsegem, F.C, Hugouvieux-Cotte-Pattat, N., Kraepiel, Y., Lojkowska, E., Moleleki, L., Gorshkov, V., & Yedidia, I. (2021). Molecular interactions of Pectobacterium and Dickeya with plants. In Plant Diseases Caused by Dickeya and Pectobacterium Species. Springer International Publishing, pp. 85–147. https://doi.org/10.1007/978-3-030-61459-1_4
43. Hugouvieux-Cotte-Pattat, N.C, Condemine, G., Gueguen, E., & Shevchik, V. E. (2020). Dickeya plant pathogens. In eLS. John Wiley & Sons, Ltd: Chichester. https://doi.org/10.1002/9780470015902.a0028932
2-2-3 Articles for general readers
44. Brochier, C.C, Hugouvieux-Cotte-Pattat, N., Flandrois, J. P., Reverchon, S., & Briolay, J. (2024). Diversity and diversification of Pectobacteriaceae, a family of phytopathogenic bacteria with global importance. Cahiers Scientifiques de la Fondation Pierre Vérots, 10, 19–29.
45. Rahbé, Y. (2020). Humanité bio-inspirée. Pour la Science, 17.
46. Rahbé, Y., & Orlandi, S. (2019). Insects as interactants in artists’ minds: Symbols and anti-symbols. Comptes Rendus Biologie, 342(7–8), 249–250. https://doi.org/10.1016/j.crvi.2019.09.004
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