Publications († equal contribution)

1. Kolimi N., Ghimire S., Duffy F., Peulen T., Medina E., Sanabria H., “Time-resolved fluorescence anisotropy from single molecules for characterizing local flexibility in biomolecules”. JoVE, 10.3791/67802 (2025).

2. Kolimi N., Ballard J., Peulen T., Goutam R., Duffy III FX., Ramirez-Sarmiento C., Babul J., Medina E., Sanabria H., “DNA controls the dimerization of the human FoxP1 Forkhead domain”. Cell Reports Physical Science, 5, 101854  (2024).

3. Cruz P., Paredes N., Asela I., Kolimi N., Molina A., Ramírez-Sarmiento C., Goutam R., Huang G., Medina E., and Sanabria H., “Domain tethering impacts dimerization and DNA-mediated allostery in the human transcription factor FoxP1”.J. Chem. Phys. 158, 195101 (2023).   

4. Kolimi N†,Pabbathi A†, Saikia N, Ding F, Sanabria H, and Alper J., “Out-of-Equilibrium Biophysical Chemistry: The Case for Multidimensional, Integrated Single-Molecule Approaches”. J. Phys. Chem. B, 125, 37, 10404–10418 (2021).

5. Ajjugal Y.†, Kolimi N†. & Rathinavelan T., Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS. Scientific Reports 11, 8163. https://doi.org/10.1038/s41598-021-87097-y (2021).   

6. Tsytlonok M, Hemmen M, Hamilton G, Kolimi N, Felekyan S, Seidel CAM, Tompa P and Sanabria H., “Specific conformational dynamics and expansion underpin a multi-step mechanism for specific binding of p27 with Cdk2/Cyclin A”. Journal of Molecular Biology, 432 (9), 2998-3017 (2020).                                                

7. Kolimi N.†, Ajjugal Y† and Rathinavelan T., “A B–Z junction induced by an A…A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZaADAR1 protein”. Journal of Biological Chemistry 2017 292: 18732-. doi:10.1074/jbc.M117.796235 (2017). 

8. Patro L.P.P., Kumar A.†, Kolimi N.† and Rathinavelan T., “3D-NuS: A Web Server for Automated Modeling and Visualization of non-canonical 3-Dimensional Nucleic Acid Structures”. Journal of Molecular Biology, 429, 2438-2448 (2017).                                                               

9. Sachdeva S.†, Kolimi N.†, Nair S.A.† and Rathinavelan T., “Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin”, Scientific Reports 28157. doi: 10.1038/srep28157 (2016).                                                             

10. Khan N.†, Kolimi N† and Rathinavelan T.†, “Twisting Right To Left: A…A Mismatch In A CAG Trinucleotide Repeat Overexpansion Provokes Left-Handed Z-DNA Conformation”, PLoS Computational Biology, 10.1371/journal.pcbi. 1004162 (2015).