Matt did his PhD in the Angenent Lab at Cornell University, where he studied how novel robust, interconnected metabolic networks can be shaped in the microbial communities of anaerobic, open-culture bioreactors. His postdoctoral work was mostly carried out at the Max-Planck Institute for Plant Breeding Research in Cologne, where he found that microbe-microbe interactions play important roles in shaping leaf microbial communities in the model plant Arabidopsis thaliana.
Matt is since November 2017 a Junior Research Group Leader in the Plant Microbiosis Lab, which is enbedded in the Institute of Microbiology at Friedrich Schiller University in Jena. His research interests focus around how and why microbial communities form in natural systems, especially the roles of microbe-microbe interactions. His research currently focuses on plant-associated microorganisms.
He enjoys spending time with his family and friends, especially when it gets him outdoors.
E-mail: matthew.agler (at) uni-jena (dot) de
Phone: +49 (0)3641 9 49980
Jisna did her Bachelor’s in Biotechnology (Multi-major) at the University of Kerala and Master’s in Plant Science at the Central University of Kerala, India. Her research experience includes an internship at the Banaras Hindu University with the focus on Green synthesis of silver nanoparticles by Withania coagulans Dunal from in vitro grown plantlets and its effect on withanolide biosynthesis under the supervision of Dr. Rai Shashi Pandey. Her Masters thesis focused on the background effects on SWEET gene induction by Xanthomonas oryzae pv.oryzae, supervised by Dr. Ginny Antony. She also worked on two other projects in the same group: Functional analysis of putative genes in Arabidopsis thaliana using CRISPR/Cas9 mediated multiplex gene editing and identification of novel effector genes in Phytophthora palmivora using CRISPR/Cas9 mediated gene knock-out.
In the Plant Microbiosis Lab, Jisna will study what, if anything, makes A. thaliana leaf microbiota resileint. Her goal is to use forward genetics methods to generate abnormal endophytic leaf microbiota, and to use this abnormal microbiota to understand the mechanisms of balanced leaf microbiome recruitment and the importance in disease susceptibility.
In her free time Jisna enjoys dancing (basically Indian classical dance), practicing yoga and cooking.
Contact: jisna.jose (at) uni-jena (dot) de
Ali completed his Master's in Evolution, Ecology and Systematics at the Friedrich Schiller University o Jena in 2020. His thesis entitled 'Climate and humanity in focus: population responses to short-term changes in aridity and temperature' was supervised by Dr René Orth (Max Planck Institute for Biogeochemistry) and Prof. Aletta Bonn (Helmholtz Centre for Environmental Research).
In addition to his Master's degree, he was involved in a project related to insect olfaction at the Max Planck Institute for Chemical Ecology. The project uncovered the chemical ecology of a multitrophic interaction in the Hansson lab. The results have since been peer-reviewed and published.
In the plant microbiosis lab, Ali will investigate how temperature and hosts together influence microbial assemblage in the phyllosphere. The project aims to investigate aspects of leaf colonisation, including but not limited to the influence of cold dormancy, the combinatorial role of temperature and glucosinolates, and the effect of temperature on bacterial isothiocyanate resistance. This project is being carried out in collaboration with the Gershenzon lab.
In his free time, he likes to read, binge Sci-fi, go to concerts and hang out with his friends.
Contact: ali.raza (at) uni-jena (dot) de
We are always looking for motivated people who are passionate about almost any topic and who can see themselves getting passionate about microbiology and microbial ecology to join the lab. If this describes you, contact Matt Agler [matthewtagler (at) gmail (dot) com] to discuss how we can make it happen!
Dr. Mariana Murillo-Roos (PhD Candidate + Post-doc), Dr. Kerstin Unger (PhD Candidate), Dr. Shubhangi Sharma (Post-doc), Dr. Teresa Mayer (PhD Candidate)
Janek Wunderlich (HiWi/Bachelor thesis), Niclas Krauss (Master's), Lilly Winkler (HiWi), Rebecca Ruiter (HiWi/Bachelor's), Simrat Naseem (HiWi), Anamarija Primc (Practical Student), Smilla Adler (Visiting Researcher, Masters Uni Lisbon), Md. Raju Ahmed (researcher), Erik Teutloff (Master's/Research Associate), Aria Aghayan (HiWi), Muhammad Abdullah Dar (Masters, together with Dr. Falk Hillmann Lab, HKI Jena), Muhammad Abdullah (Masters); Pamela Baumann (Masters); Eberechukwu Maryann Okoli (HiWi); Aminat Odejide (Masters),