Microbial Genomics and Bioinformatics
Publications (last 5 years)
2024
Nunes, B.; Barata, A.R.; Oliveira, R.; Guedes, H.; Almeida, C.; Jorge da Silva, G.; Nogueira, T.; Saavedra, M.J.; Almeida, G. Occurrence and diversity of Listeria monocytogenes in Portuguese dairy farms. The Microbe 2024. https://doi.org/10.1016/j.microb.2024.100063
Mavrikaki, E.; Realdon, G.; Aivelo, T; Bajrami, A.; Bakanay, C.D.; (...) Nogueira, Teresa; et al. Evolution in European and Israeli school curricula - a comparative analysis. International Journal of Science Education 2024. https://doi.org/10.1080/09500693.2023.2293090
Azevedo, I.; Barbosa, J.; Albano, H; Nogueira, T.; Teixeira, P. Lactic Acid Bacteria isolated from traditional and innovative alheiras as potential biocontrol agents. Food Microbiology 2024, 104450. https://doi.org/10.1016/j.fm.2023.104450
2023
Ribeiro, M.; Maciel, C.; Cruz, P.; Darmancier, H.; Nogueira, T.; Costa, M.; Laranjeira, J.; Morais, R.M.S.C.; Teixeira, P. Exploiting Potential Probiotic Lactic Acid Bacteria Isolated from Chlorella vulgaris Photobioreactors as Promising Vitamin B12 Producers. Foods 2023, 12, 3277. https://doi.org/10.3390/foods12173277
Improving antimicrobial resistance surveillance in livestock production. Nat Food 4, 646–647 (2023). https://doi.org/10.1038/s43016-023-00835-5
Celia P. F. Domingues; Joao S. Rebelo; Francisco Dionisio; Nogueira, Teresa. "Multi-Drug Resistance in Bacterial Genomes—A Comprehensive Bioinformatic Analysis". International Journal of Molecular Sciences 24 14 (2023): 11438. https://doi.org/10.3390/ijms241411438.
Rebelo, João S.; Domingues, Célia P. F.; Nogueira, Teresa; Dionisio, Francisco. "Plasmid-bearing cells can use their plasmids as efficient weapons even if transconjugants are poor donors". Microorganisms 11 (2023). https://doi.org/10.3390/microorganisms11051238
Rebelo, João S.; Domingues, Célia P. F.; Dionisio, Francisco. "Plasmid Costs Explain Plasmid Maintenance, Irrespective of the Nature of Compensatory Mutations". Antibiotics 12 5 (2023): 841. https://doi.org/10.3390/antibiotics12050841.
Dionisio, Francisco; Nogueira, Teresa. "Mundo feito de mudanças. A variação textual é apenas uma das diferenças que caracterizam a vida humana". In Descubra as diferenças. Variação na literatura portuguesa desde a Idade Média até anteontem. Lisbon: CLUL, 2023. https://variacao.tobeunlikely.pt/mundo-feito-de-mudancas-01/ https://www.bnportugal.gov.pt/images/stories/agenda/2023/descubra_diferencas_brochura.pdf
de Lima, Joelyn; Adnadevic, Tanja; Barstad, Johan; Georgiou, Martha; Holm, Sile; Kenig, Bojan; Martinelli, Lucia; Nogueira, Teresa; et al. "Developing non-formal learning activities focused on increasing evolutionary knowledge and scientific literacy". zenodo (2023): 1-63. https://doi.org/10.5281/zenodo.7711038.
Dionisio, Francisco; Domingues, Célia P. F.; Rebelo, João S.; Monteiro, Francisca; Nogueira, Teresa. "The Impact of Non-Pathogenic Bacteria on the Spread of Virulence and Resistance Genes". International Journal of Molecular Sciences 24 3 (2023): 1967. http://dx.doi.org/10.3390/ijms24031967.
Vale Costa, L.; Proença, F.; Passos, A.; Zagalo, N.; Nogueira, T.; Duarte, M.; Ortet, C.; Veloso, A. Designing for for viral infection awareness through PLAYMUTATION. https://library.oapen.org/handle/20.500.12657/85829
Nogueira, Teresa. Genomic Analysis of Antibiotics Resistance in Pathogens. MDPI. 2023.
http://doi.org/10.3390/books978-3-0365-6523-1
2022
Daniel G. Silva; Célia P. F. Domingues; João F. Figueiredo; Dionisio, Francisco; Botelho, Ana; Nogueira, Teresa. "Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome". Biology (2022): https://doi.org/10.3390/biology11111681.
Teresa Nogueira; Daniel G. Silva; Susana Lopes; Ana Botelho. "Database of Metagenomes of Sediments from Estuarine Aquaculture Farms in Portugal - AquaRAM Project Collection". Data (2022): https://doi.org/10.3390/data7110167.
Nogueira, Teresa. 2022. Guild-level microbiome signature associated with COVID-19 severity and prognosis. Rapid Reviews COVID-19. https://doi.org/10.1162/2e3983f5.f4c160b1.
Nogueira, Teresa. "Genomic Analysis of Antibiotics Resistance in Pathogens". Antibiotics 11 8 (2022): 1013. http://dx.doi.org/10.3390/antibiotics11081013.
Helena Darmancier; Celia P. F. Domingues; Joao S. Rebelo; Ana Amaro; Dionisio, Francisco; Joël Pothier; Serra, Octávio; Nogueira, Teresa. "Are Virulence and Antibiotic Resistance Genes Linked? A Comprehensive Analysis of Bacterial Chromosomes and Plasmids". Antibiotics 11 706 (2022): https://doi.org/10.3390/antibiotics11060706.
Evolution of Animal Microbial Communities in Response to Environmental Stress. Lausanne, Suiça: Frontiers Media SA. 2022.
Nogueira, Teresa; Ana Rosa Botelho; Lucas Bowler; João Inácio. "Editorial: Evolution of Animal Microbial Communities in Response to Environmental Stress". Frontiers in Microbiology (2022): https://doi.org/10.3389/fmicb.2022.860609.
2021
Celia P. F. Domingues; Joao S. Rebelo; Francisca Monteiro; Nogueira, Teresa; Dionisio, Francisco. "Harmful behaviour through plasmid transfer: a successful evolutionary strategy of bacteria harbouring conjugative plasmids". Philosophical Transactions B (2021): https://doi.org/10.1098/rstb.2020.0473.
João S. Rebelo; Célia P. F. Domingues; Francisca Monteiro; Teresa Nogueira; Francisco Dionisio. "Bacterial persistence is essential for susceptible cell survival in indirect resistance, mainly for lower cell densities". PLOS ONE (2021): https://doi.org/10.1371/journal.pone.0246500.
Margarida Duarte; Teresa Nogueira; Ana Botelho; Sandra Cavaco; Ana Duarte; Patricia Tavares Santos; Rita Sousa; Sara Portela. Animal and Human Coronaviruses: Evolution and pathogenicity of the virus and disease prevention. Zenodo. 2021. https://doi.org/10.5281/zenodo.5710679.
Nogueira, Teresa; Ana Rita Ponce. Influenza Virus: A Challenge to the Immune System and to Medicine in the Light of Evolution. Zenodo. 2021. https://doi.org/10.5281/zenodo.5809065
Nogueira, Teresa; Ana Botelho. "Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures". Antibiotics 10 7 (2021): 787. https://doi.org/10.3390/antibiotics10070787.
João Rebelo; Celia P. F. Domingues; Francisco Dionisio; Manuel Carmo Gomes; Ana Botelho; Nogueira, Teresa. "COVID-19 lockdowns may reduce resistance genes diversity in the human microbiome and the need for antibiotics". International Journal of Molecular Sciences 22 13 (2021): 6891. https://doi.org/10.3390/ijms22136891.
Rita Ponce; Nogueira, Teresa. "A Gripe (Flu)". Revista de Ciência Elementar 9 2 (2021): 32. http://doi.org/10.24927/rce2021.032.
Nogueira, Teresa; Rita Ponce. "O Vírus da Gripe (Flu Virus)". Revista de Ciência Eementar 9 2 (2021): 38. http://doi.org/10.24927/rce2021.038.
Joana Inês Bastos Barbosa; Helena Albano; Beatriz Silva; Maria Helena Almeida; Nogueira, Teresa; Paula Teixeira. "Characterization of a Lactiplantibacillus plantarum R23 isolated from arugula by whole-genome sequencing and its bacteriocin production ability". International Journal of Environmental Research and Public Health (2021): https://doi.org/10.3390/ijerph18115515.
Celia P. F. Domingues; Joao S. Rebelo; Joël Pothier; Francisca Monteiro; Nogueira, Teresa; Francisco Dionisio. "The perfect condition for the rising of superbugs: person-to-person contact and antibiotic use are the key factors responsible for the positive correlation between antibiotic resistance gene diversity and virulence gene diversity in human metagenomes". Antibiotics (2021): https://doi.org/10.3390/antibiotics10050605.
Fabio Abade dos Santos; Sara portela; Nogueira, Teresa; Carina Carvalho; Rita Sousa; Margarida Duarte. "Harmless Or Threatening? Interpreting the Results of Molecular Diagnosis in the context of Virus-Host Relationships". Frontiers in Microbiology (2021): https://www.frontiersin.org/articles/10.3389/fmicb.2021.647730.
Sá-Pinto, Xana; Realdon, Giulia; Torkar, Gregor; Sousa, Bruno; Georgiou, Martha; Jeffries, Alex; Korfiatis, Konstantinos; (...) Nogueira, Teresa; et al. "Development and validation of a framework for the assessment of school curricula on the presence of evolutionary concepts (FACE)". Evolution: Education and Outreach 14 1 (2021): http://dx.doi.org/10.1186/s12052-021-00142-2.
2020
Margarida Duarte; Teresa Nogueira; Ana Rosa Botelho; Sandra Cavaco Gonçalves; Ana Duarte; Patricia Tavares Santos; Rita Sousa; Sara Portela. Coronavírus dos Animais e do Homem: Evolução e Patogenia dos Vírus e Prevenção de Doença. Portugal: INIAV. 2020.
Célia P. F. Domingues; João S. Rebelo; Francisco Dionisio; Ana Botelho; Teresa Nogueira. "The Social Distancing Imposed To Contain COVID-19 Can Affect Our Microbiome: a Double-Edged Sword in Human Health". mSphere (2020): https://doi.org/10.1128/mSphere.00716-20.
Adnadevic, Tanja; Milosevic, Tamara; Radovcic, Davorka, (...) Nogueira, Teresa; et al. "Exploratory study of evolution-themed, non-formal education in Europe". (2020): https://doi.org/10.5281/zenodo.3712725.
2019
Pedro HC David; Xana Sá-Pinto; Nogueira, Teresa. "Microbiomes are Important Key Players in Human Health-Mutualistic Interactions with and between our Microbes". JOJ Internal Medicine 1 2 (2019): 555556. https://juniperpublishers.com/jojim/pdf/JOJIM.MS.ID.555556.pdf.
Nogueira, Teresa; Ponce, Rita. Vírus da gripe: desafios do sistema imunitário e da medicina à luz da evolução. 2019.
Pedro Escudeiro; Joël Pothier; Francisco Dionisio; Teresa Nogueira. "Antibiotic Resistance Gene Diversity and Virulence Gene Diversity Are Correlated in Human Gut and Environmental Microbiomes". mSphere (2019): https://doi.org/10.1128/mSphere.00135-19.
Pedro H C David; Xana Sá-Pinto; Teresa Nogueira. "Using SimulATe to model the effects of antibiotic selective pressure on the dynamics of pathogenic bacterial populations". Biology Methods and Protocols (2019): https://doi.org/10.1093/biomethods/bpz004.
Teresa Nogueira; Pedro H. C. David; Joël Pothier. "Antibiotics as both friends and foes of the human gut microbiome: The microbial community approach". Drug Development Research (2019): https://doi.org/10.1002/ddr.21466.