Embedded Files
We use two publicly available datasets independently recorded by separate laboratories. Raw data from the Friedman2017 dataset were kindly provided by authors upon request and we make them available here with their agreement. The BaranwalClark2022 dataset is open-source and can be found here as well as in the original publication.Â
Friedman, J., Higgins, L. M., & Gore, J. (2017). Community structure follows simple assembly rules in microbial microcosms. Nature ecology & evolution, 1(5), 0109.
Baranwal, M., Clark, R. L., Thompson, J., Sun, Z., Hero, A. O., & Venturelli, O. S. (2022). Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics. Elife, 11, e73870.
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