Papers
* first author
† correspondence
In prep
Yoo SY and Kim JS†. The gyrA gene mediated antibiotic tolerance to quinolones at low temperatures. in prep
Jin DY, Park JS, Seo HW† and Kim JS†. Consuming red ginseng can prevent dysbiosis of the gut microbiota resulting from antibiotic treatments. in prep
Jung SC, Baek GH and Kim JS†. The effect of red ginseng on gut Microbiota in obese mouse models. in prep
Yoo SY and Kim JS†. Lactobacillus casei treatments in a DSS-induced colitis mouse model. in prep
2024
61. Seo S, Kim K, Kim JS, Lee K, Kim HI, Kwon O. Accurate and sensitive detection of pathogenic bacteria living in wastewater via aptamer-loaded GFET for sewage treatment analysis. Submitted
60. Jung JS, Baek GH, Kim JW, Kim JH, Chung EH, Ko JW, Kwon MJ, Kim SK, Lee SH, Kim JS†, Kim TW†. Korean Red ginseng alleviates dextran sodium sulfate-induced colitis through gut microbiota modulation in mice. J Ginseng Res. 2024, 48(6)
59. Lim S*, Park SY*, Kim JS*, Kwon H, Kim SG, Park SC, Han JE, Kim JH. Biological and genomic characterization of the novel bacteriophage vB_VpM-pA2SJ1, which infects Vibrio parahaemolyticus associated with acute hepatopancreatic necrosis disease. Arch Virol. 2024, 169, 196
58. Han S†, Yamamoto S, Jung CY, Kim JS†. Wearable sensors for monitoring chronic kidney disease. Commun Mater. 2024, 5, 153
57. Park B, Han G, Jin DY, Gil KC, Shin D, Lee J, Park JY, Jang H, Park D, Lee S, Kim K, Yang Y, Kim Y, Kim JS†, Kim SH†, Shim MK†. Mucoadhesive Mesalamine Prodrug Nanoassemblies to Target Intestinal Macrophages for the Treatment of Inflammatory Bowel Disease. ACS Nano. 2024, 18, 25, 16297–16311
56. Na HH, Kim S, Kim JS, Lee S, Kim Y, Kim SH, Lee CH, Kim D, Yoon S, Jeong H, Kweon DH, Seo HW, Ryu CM. Facemask acneattenuation through modulation of indirect microbiome interactions. NPJ Biofilms Microbiomes. (2024) 10:50
55. Moon S, Lee KW, Moon J, Park SH, Kim S, Hwang J, Kim JS†, Jeon YJ†, Kweon DH†. 3-Fucosyllactose-Mediated Modulation of Immune Response against Virus Infection. Int. J. Antimicrob. Agents. 2024, 64(1), 107187
54. Yoo SY, Jung SC, Kwak K†, Kim JS†. The Role of Prebiotics in Modulating Gut Microbiota: Implications for Human Health. Int. J. Mol. Sci. 2024, 25(9), 4834
53. Shin J, Baek GH, Cha B, Park SH, Lee JH, Kim JS†, Kwon KS†. Complementary Therapeutic Effect of Fecal Microbiota Transplantation in Ulcerative Colitis after the Response to Anti-Tumor Necrosis Factor Alpha Agent Was Lost: A Case Report. Biomedicines. 2024, 12(4), 800
52. Kim JS*, Park H, Lee JH, Shin J, Cha B, Kwon KS, Shin YW, Kim Y, Kim Y, Bae JS, Lee JH, Park SH. Effect of altered gene expression in lipid metabolism on cognitive improvement in patients with Alzheimer’s dementia following fecal microbiota transplantation: A preliminary study. Ther Adv Neurol Disord. 2024, 17, 1–14
2023
51. Baek GH, Kim YJ, Lee Y, Jung SC, Seo HW†, Kim JS†. Prebiotic Potential of Green Banana Flour: Impact on Gut Microbiota Modulation and Microbial Metabolic Activity in a Murine Model. Front. Nutr. 2023, 10:1249358
50. Park SY, Lee KM, Kwon H, Han JE, Kim JH†, Kim JS†. Complete genome sequence of the bacteriophage vB_EfeM-pEP20 infecting Escherichia fergusonii, a new member of the genus Felixounavirus§. Korean J. Microbiol. 2023, 59(3), 239-242
49. Le VP*, Ahn MJ*, Kim JS*, Jung MC*, Yoon SW, Trinh TBN, Le TN, Kim HK, Kang JA, Lim JW, Yeom M, Na W, Xie X, Feng Z, Song D, Jeong DG. Whole-genome analysis of the African swine fever virus that circulated during the first outbreak in Vietnam in 2019 and subsequently in 2022. Viruses. 2023, 15, 1945
48. Kong HG, Son JS, Chung JH, Lee S, Kim JS†, Ryu CM†. Population dynamics of intestinal Enterococcus modulates Galleria mellonella metamorphosis. Microbiol Spectr. 2023
47. Baek GH, Yoo KM, Kim SY, LeeDH, Chung H, Jung SC, Park SK†, Kim JS†. Collagen peptide exerts anti-obesity effect by influencing on the Firmicutes/Bacteroidetes ratio in the gut. Nutrients. 2023, 15(11), 2610
46. Jung SH, Riu M, Lee S, Kim JS, Jeon JS, Ryu CM. An anaerobic rhizobacterium primes rice immunity. New Phytol. 2023
45. Kim SY, Seo HW, Park MS, Park CM, Seo J, Rho J, Myung S, Ko KS, Kim JS†, Ryu CM†. Exploitation of a novel adjuvant for polymyxin B against multidrug-resistant Acinetobacter baumannii. J Antimicrob Chemother. 2023
2022
44. Park SY, Kwon H, Kim JS, Seo S, and Kim JH. Complete genome sequence of Zindervirus phage vB_SenAt-pSL2 infecting Salmonella enterica subsp. enterica serovar Enteritidis from Korean broiler chickens. Korean J. Microbiol. 2022;58(2):105-108
43. Park SH, Lee JH, Kim JS, Kim TJ, Shin J, Im JH, Cha B, Lee S, Kwon KS, Shin YW, Ko SB, Choi SH. Fecal microbiota transplant can improve cognition in patients with cognitive decline and Clostridioides difficile infection. Aging (Albany NY). 2022 Aug 16
42. Kim SY, Shin J, Park JS, Cha B, Seo Y, Park SH, Lee JH, Kim JS, Kwon G. The first report on effect of fecal microbiota transplantation as a complementary treatment in a patient with steroid-refractory Cronkhite-Canada syndrome : A case report. Medicine (Baltimore). 2022 Mar 25;101(12): e29135
2021
41. Lee KS, Lee J, Lee P, Jeon BC, Song MY, Kwak S, Lee J, Kim JS, Kim DJ, Kim JH, Tesh V, Lee MS, Park SK. Inhibition of O-GlcNAcylation protects from Shiga toxin-mediated cell injury and lethality in host . EMBO Mol Med. 2021 Nov 29;e14678. doi: 10.15252/emmm.202114678
40. Song S, Kim JS, Yamasaki R, Oh S, Menedik MJ, Wood TK. Escherichia coli Cryptic Prophages Sense Nutrients to Influence Persister Cell Resuscitation. Environ Microbiol. 2021 Oct 19; 23(11):7245-7254
39. Kim KH, An JE, Kim JS, Bae J, Kwon OS. Graphene field-effect transistor based high-performance wireless portable device for h1n1 detection. Appl Sci Converg Technol. 2021 Jul 30(4); 111-114
38. Park SH, Lee JH, Shin J, Kim JS, Cha B, Lee S, Kwon KS, Shin YW, Choi SH. Cognitive function improvement after fecal microbiota transplantation in in Alzheimer's dementia patient: a case report. Curr Med Res Opin. 2021 Jul 22;1
2011-2020
37. Jung J, Kim JS, Taffner J, Berg G, Ryu CM. Archea, tiny helpers of land plants. Comput Struct Biotechnol J. 2020 Nov 1;167:112514.
36. Kim KH, Park SJ, Park CS, Seo SE, Lee J, Kim JS, Lee SH, Lee S, Kim JS, Ryu CM, Yong D, Yoon H, Song HS, Lee SH, Kwon OS. High-performance portable graphene field-effect transistor device for detecting Gram-positive and -negative bacteria. Biosens Bioelectron. 2020 Nov 1;167:112514.
35. Park SY, Lee M, Lim SR, Kim JS, Kim SY, Han JE, Kim JH, Seo S. Complete genome sequence of Streptococcus equinus CNU_G6, isolated from the rumen of native Korean cattle. Korean J. Microbiol. 2020
34. Han JE, Choi SK, Han SH, Lee SC, Jeon HJ, Lee C, Kim KY, Lee YS, Park SC, Rhee G, Park SY, Kim JS, Park S, Kim JH, Lee KJ. Genomic and histopathological characteristics of Vibrio parahaemolyticus isolated from an acute hepatopancreatic necrosis disease outbreak in Penaeus vannamei shrimp cultured in Korea. Aquaculture. 2020
33. Kim JS*, Lee MS, Kim JH. Recent Updates on Outbreaks of Shiga Toxin-Producing Escherichia coli and Its Potential Reservoirs. Front Cell Infect Microbiol. 2020;10:273.
32. Kim JS*, Yoon SJ, Park YJ, Kim SY, Ryu CM. Crossing the kingdom border: Human diseases caused by plant pathogens. Environ Microbiol. 2020 Apr 19;.
31. Park SH, Yoon SJ, Choi S, Kim JS, Lee MS, Lee SJ, Lee SH, Min JK, Son MY, Ryu CM, Yoo J, Park YJ. Bacterial type III effector protein HopQ inhibits melanoma motility through autophagic degradation of vimentin. Cell Death Dis. 2020 Apr 14;11(4):231.
30. Seo SO, Park SK, Jung SC, Ryu CM, Kim JS†. Anti-Contamination Strategies for Yeast Fermentations. Microorganisms. 2020 Feb 18;8(2).
29. Jung SH, Ryu CM, Kim JS†. Bacterial persistence: Fundamentals and clinical importance. J Microbiol. 2019 Aug 28;.
28. Fernandez-Garcia L, Kim JS, Tomas M, Wood TK. Toxins of Toxin/Antitoxin Systems are Inactivated Primarily Through Promoter Mutations. J Appl Microbiol. 2019 Aug 19
27. Song S, Gong T, Yamasaki R, Kim JS, Wood TK. Identification of a Potent Indigoid Persister Antimicrobial by Screening Dormant Cells. Biotechnol Bioeng. 2019 Jun 4
26. Zhang L, Holle MJ, Kim JS, Daum MA, Miller MJ. Nisin incorporation enhances the inactivation of lactic acid bacteria during the acid wash step of bioethanol production from sugarcane juice. Lett Appl Microbiol. 2019 Apr 20
25. Song S, Guo Y, Kim JS, Wang X, Wood TK. Phages Mediate Bacterial Self-Recognition. Cell Rep. 2019 Apr 16;27(3):737-749.e4.
24. Lee HS, Lee S, Kim JS, Lee HR, Shin HC, Lee MS, Jin KS, Kim CH, Ku B, Ryu CM, Kim SJ. Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence. Front Microbiol. 2019 Jan 14;9:3329.
23. Yoon SJ, Park YJ, Kim JS, Lee S, Lee SH, Choi S, Min JK, Choi I, Ryu CM. Pseudomonas syringae evades phagocytosis by animal cells via type III effector-mediated regulation of actin filament plasticity. Environ Microbiol. 2018 Nov;20(11):3980-3991.
22. Kim JS*, Yamasaki R, Song S, Zhang W, Wood TK. Single cell observations show persister cells wake based on ribosome content. Environ Microbiol. 2018 Jun;20(6):2085-2098.
21. Kim JS*, Chowdhury N, Yamasaki R, Wood TK. Viable but non-culturable and persistence describe the same bacterial stress state. Environ Microbiol. 2018 Jun;20(6):2038-2048. Faculty of 1000 Evaluated!
20. Kim JS*, Daum MA, Jin YS, Miller MJ. Yeast Derived LysA2 Can Control Bacterial Contamination in Ethanol Fermentation. Viruses. 2018 May 24;10(6).
19. Kim JS*, Schantz AB, Song S, Kumar M, Wood TK. GhoT of the GhoT/GhoS toxin/antitoxin system damages lipid membranes by forming transient pores. Biochem Biophys Res Commun. 2018 Mar 4;497(2):467-472.
18. Lee Y, Song S, Sheng L, Zhu L, Kim JS, Wood TK. Substrate Binding Protein DppA1 of ABC Transporter DppBCDF Increases Biofilm Formation in Pseudomonas aeruginosaby Inhibiting Pf5 Prophage Lysis. Front Microbiol. 2018;9:30.
17. Kim JS*, Wood TK. Tolerant, Growing Cells from Nutrient Shifts Are Not Persister Cells. MBio. 2017 Apr 18;8(2).
16. Kim JS*, Wood TK. Persistent Persister Misperceptions. Front Microbiol. 2016;7:2134.
15. Kim JS*, Cho DH, Heo P, Jung SC, Park M, Oh EJ, Sung J, Kim PJ, Lee SC, Lee DH, Lee S, Lee CH, Shin D, Jin YS, Kweon DH. Fumarate-Mediated Persistence of Escherichia coli against Antibiotics. Antimicrob Agents Chemother. 2016 Apr;60(4):2232-40.
14. Kim JS*, Cho DH, Park M, Chung WJ, Shin D, Ko KS, Kweon DH. CRISPR/Cas9-Mediated Re-Sensitization of Antibiotic-Resistant Escherichia coli Harboring Extended-Spectrum β-Lactamases. J Microbiol Biotechnol. 2016 Feb;26(2):394-401.
13. Van Tassell ML, Angela Daum M, Kim JS, Miller MJ. Creative lysins: Listeria and the engineering of antimicrobial enzymes. Curr Opin Biotechnol. 2016 Feb;37:88-96.
12. Cheon Y, Kim JS, Park JB, Heo P, Lim JH, Jung GY, Seo JH, Park JH, Koo HM, Cho KM, Park JB, Ha SJ, Kweon DH. A biosynthetic pathway for hexanoic acid production in Kluyveromyces marxianus. J Biotechnol. 2014 Jul 20;182-183:30-6.
11. Heo P, Yang TJ, Chung SC, Cheon Y, Kim JS, Park JB, Koo HM, Cho KM, Seo JH, Park JC, Kweon DH. Simultaneous integration of multiple genes into the Kluyveromyces marxianus chromosome. J Biotechnol. 2013 Sep 10;167(3):323-5.
10. Lee KS*, Kim JS*, Heo P, Yang TJ, Sung YJ, Cheon Y, Koo HM, Yu BJ, Seo JH, Jin YS, Park JC, Kweon DH. Characterization of Saccharomyces cerevisiae promoters for heterologous gene expression in Kluyveromyces marxianus. Appl Microbiol Biotechnol. 2013 Mar;97(5):2029-41.
9. Kim JS*, Heo P, Yang TJ, Lee KS, Cho DH, Kim BT, Suh JH, Lim HJ, Shin D, Kim SK, Kweon DH. Selective killing of bacterial persisters by a single chemical compound without affecting normal antibiotic-sensitive cells. Antimicrob Agents Chemother.2011 Nov;55(11):5380-3.
Faculty of 1000 Evaluated!
8. Kim JS*, Heo P, Yang TJ, Lee KS, Jin YS, Kim SK, Shin D, Kweon DH. Bacterial persisters tolerate antibiotics by not producing hydroxyl radicals. Biochem Biophys Res Commun. 2011 Sep 16;413(1):105-10.
2007-2010
7. Yang Y, Shin JY, Oh JM, Jung CH, Hwang Y, Kim S, Kim JS, Yoon KJ, Ryu JY, Shin J, Hwang JS, Yoon TY, Shin YK, Kweon DH. Dissection of SNARE-driven membrane fusion and neuroexocytosis by wedging small hydrophobic molecules into the SNARE zipper. Proc Natl Acad Sci USA. 2010 Dec 21;107(51):22145-50.
6. Shin JY, Shin JI, Kim JS, Yang YS, Hwang Y, Yang JS, Shin D, Seo JH, Jin YS, Park YC, Hwang JS, Kweon DH. Assembly of Coenzyme Q10 nanostructure resembling nascent discoidal high density lipoprotein particle. Biochem Biophys Res Commun. 2009 Oct 16;388(2):217-21.
5. Shin JY, Shin JI, Kim JS, Yang YS, Shin YK, Kim KK, Lee S, Kweon DH. Disulfide bond as a structural determinant of prion protein membrane insertion. Mol Cells. 2009 Jun 30;27(6):673-80.
4. Jung CH, Yang YS, Kim JS, Shin YK, Hwang JS, Son ED, Lee HH, Chung KM, Oh JM, Lee JH, Kweon DH. Inhibition of SNARE-driven neuroexocytosis by plant extracts. Biotechnol Lett. 2009 Mar;31(3):361-9.
3. Jung CH, Yang YS, Kim JS, Shin JI, Jin YS, Shin JY, Lee JH, Chung KM, Hwang JS, Oh JM, Shin YK, Kweon DH. A search for synthetic peptides that inhibit soluble N-ethylmaleimide sensitive-factor attachment receptor-mediated membrane fusion. FEBS J. 2008 Jun;275(12):3051-63.
2. Shin JI, Shin JY, Kim JS, Yang YS, Shin YK, Kweon DH. Deep membrane insertion of prion protein upon reduction of disulfide bond. Biochem Biophys Res Commun. 2008 Dec 19;377(3):995-1000
1. Jung SC, Kim JS, Jung CY, Kweon DH, Park K, Jin YS. Policosanol Production from Rice Bran Oil Byproducts. Food Engineering Progress. 2007 Nov;11(4):293-297.