Publication
Miyako's ORCID, Publons, Loop, etc...
Peer-reviewed journal articles
2022
1: Matsui A, Todaka D, Tanaka M, Mizunashi K, Takahashi S, Sunaoshi Y,
Tsuboi Y, Ishida J, Bashir K, Kikuchi J, Kusano M, Kobayashi M, Kawaura K,
Seki M. Ethanol induces heat tolerance in plants by stimulating unfolded protein
response. Plant Mol Biol. 2022 Jun 22. doi: 10.1007/s11103-022-01291-8.
PMID: 35729482
2: Kusano M, Worarad K, Fukushima A, Kamiya K, Mitani Y, Okazaki Y,
Higashi Y, Nakabayashi R, Kobayashi M, Mori T, Nishizawa T, Takebayashi Y,
Kojima M, Sakakibara H, Saito K, Hao S, Shinozaki Y, Okabe Y, Kimbara J,
Ariizumi T, Ezura H. Transcriptomic, Hormonomic and Metabolomic Analyses
Highlighted the Common Modules Related to Photosynthesis, Sugar Metabolism
and Cell Division in Parthenocarpic Tomato Fruits during Early Fruit Set. Cells.
2022 Apr 22;11(9):1420. doi: 10.3390/cells11091420. PMID: 35563726.
3: Fukushima A, Takahashi M, Nagasaki H, Aono Y, Kobayashi M, Kusano M,
Saito K, Kobayashi N, Arita M. Development of RIKEN Plant Metabolome
MetaDatabase. Plant Cell Physiol. 2022 Mar 11;63(3):433-440.
doi: 10.1093/pcp/pcab173. PMID: 34918130.
4: Fukudome C, Takisawa R, Nakano R, Kusano M, Kobayashi M, Motoki K,
Nishimura K, Nakazaki T. Analysis of mechanism regulating high total soluble
solid content in the parthenocarpic tomato fruit induced by pat-k gene.
Sci Hortic. 2022 Volume 301, 111070.
https://doi.org/10.1016/j.scienta.2022.111070
5: Tamura Y, Iwatoh S, Miyaura K, Asikin Y, Kusano M. Metabolomic profiling
reveals the relationship between taste-related metabolites and roasted
aroma in aged pork. LWT. 2022 Volume 155, 112928.
https://doi.org/10.1016/j.lwt.2021.112928
2021
1: Abdelrahman M, Nishiyama R, Tran CD, Kusano M, Nakabayashi R,
Okazaki Y, Matsuda F, Chavez Montes RA, Mostofa MG, Li W, Watanabe Y,
Fukushima A, Tanaka M, Seki M, Saito K, Herrera-Estrella L, Tran LSP.
Defective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite
networks to mitigate high salinity in Arabidopsis. Proc Natl Acad Sci U S A. 2021
Nov 30;118(48):e2105021118. doi: 10.1073/pnas.2105021118. PMID: 34815339
2: Kawaguchi K, Takei-Hoshi R, Yoshikawa I, Nishida K, Kobayashi M,
Kusano M, Lu Y, Ariizumi T, Ezura H, Otagaki S, Matsumoto S, Shiratake K.
Functional disruption of cell wall invertase inhibitor by genome editing increases
sugar content of tomato fruit without decrease fruit weight. Sci Rep. 2021 Nov
2;11(1):21534. doi: 10.1038/s41598-021-00966-4. PMID: 34728724
3: Aono Y, Asikin Y, Wang N, Tieman D, Klee H, Kusano M.
High-Throughput Chlorophyll and Carotenoid Profiling Reveals Positive
Associations with Sugar and Apocarotenoid Volatile Content in Fruits of
Tomato Varieties in Modern and Wild Accessions. Metabolites.
https://doi.org/10.3390/metabo11060398.
2020
1: Chen Y, Shukurova MK, Asikin Y, Kusano M, Watanabe KN.
Characterization of Volatile Organic Compounds in Mango Ginger (Curcuma
amada Roxb.) from Myanmar. Metabolites. 2020 Dec 30;11(1):21. doi:
10.3390/metabo11010021. PMID: 33396947.
2: Shinozaki Y, Beauvoit BP, Takahara M, Hao S, Ezura K, Andrieu MH, Nishida K,
Mori K, Suzuki Y, Kuhara S, Enomoto H, Kusano M, Fukushima A, Mori T, Kojima M,
Kobayashi M, Sakakibara H, Saito K, Ohtani Y, Benard C, Prodhomme D, Gibon Y,
Ezura H, Ariizumi T. Fruit setting rewires central metabolism via gibberellin
cascades. Proc Natl Acad Sci U S A. 2020 Sep 3:202011859. doi:
10.1073/pnas.2011859117. Epub ahead of print. PMID: 32883877.
3: Utsumi Y, Tanaka M, Utsumi C, Takahashi S, Matsui A, Fukushima A, Kobayashi
M, Sasaki R, Oikawa A, Kusano M, Saito K, Kojima M, Sakakibara H, Sojikul P,
Narangajavana J, Seki M. Integrative omics approaches revealed a crosstalk among
phytohormones during tuberous root development in cassava. Plant Mol Biol. 2020
Aug 5. doi: 10.1007/s11103-020-01033-8. Epub ahead of print. PMID: 32757126.
4: Shukurova MK, Asikin Y, Chen Y, Kusano M, Watanabe KN. Profiling of Volatile
Organic Compounds in Wild Indigenous Medicinal Ginger (Zingiber barbatum
Wall.) from Myanmar. Metabolites. 2020 Jun 15;10(6):248. doi:
10.3390/metabo10060248. PMID: 32549365; PMCID: PMC7344531.
5: Ichihashi Y, Date Y, Shino A, Shimizu T, Shibata A, Kumaishi K, Funahashi F,
Wakayama K, Yamazaki K, Umezawa A, Sato T, Kobayashi M, Kamimura M, Kusano M,
Che FS, O Brien M, Tanoi K, Hayashi M, Nakamura R, Shirasu K, Kikuchi J, Nihei
N. Multi-omics analysis on an agroecosystem reveals the significant role of
organic nitrogen to increase agricultural crop yield. Proc Natl Acad Sci U S A.
2020 Jun 23;117(25):14552-14560. doi: 10.1073/pnas.1917259117. Epub 2020 Jun 8.
PMID: 32513689; PMCID: PMC7321985.
6: Fukushima A, Kuroha T, Nagai K, Hattori Y, Kobayashi M, Nishizawa T, Kojima
M, Utsumi Y, Oikawa A, Seki M, Sakakibara H, Saito K, Ashikari M, Kusano M.
Metabolite and Phytohormone Profiling Illustrates Metabolic Reprogramming as an
Escape Strategy of Deepwater Rice during Partially Submerged Stress.
Metabolites. 2020 Feb 14;10(2):68. doi: 10.3390/metabo10020068. PMID: 32075002;
PMCID: PMC7074043.
7: Maruyama K, Urano K, Kusano M, Sakurai T, Takasaki H, Kishimoto M, Yoshiwara
K, Kobayashi M, Kojima M, Sakakibara H, Saito K, Shinozaki K.
Metabolite/phytohormone-gene regulatory networks in soybean organs under
dehydration conditions revealed by integration analysis. Plant J. 2020
Jul;103(1):197-211. doi: 10.1111/tpj.14719. Epub 2020 May 3. PMID: 32072682;
PMCID: PMC7384127.
8: Kusano M, Fukushima A, Tabuchi-Kobayashi M, Funayama K, Kojima S, Maruyama K,
Yamamoto YY, Nishizawa T, Kobayashi M, Wakazaki M, Sato M, Toyooka K, Osanai-
Kondo K, Utsumi Y, Seki M, Fukai C, Saito K, Yamaya T. Cytosolic GLUTAMINE
SYNTHETASE1;1 Modulates Metabolism and Chloroplast Development in Roots. Plant
Physiol. 2020 Apr;182(4):1894-1909. doi: 10.1104/pp.19.01118. Epub 2020 Feb 5.
PMID: 32024696; PMCID: PMC7140926.
2019
1: Le QTN, Sugi N, Furukawa J, Kobayashi M, Saito K, Kusano M, Shiba H.
Association analysis of phenotypic and metabolomic changes in Arabidopsis
accessions and their F<sub>1</sub> hybrids affected by different photoperiod and
sucrose supply. Plant Biotechnol (Tokyo). 2019 Sep 25;36(3):155-165. doi:
10.5511/plantbiotechnology.19.0604a. PMID: 31768117; PMCID: PMC6854347.
2: Vu NT, Kamiya K, Fukushima A, Hao S, Ning W, Ariizumi T, Ezura H, Kusano M.
Comparative co-expression network analysis extracts the SlHSP70 gene
affecting to shoot elongation of tomato. Plant Biotechnol (Tokyo). 2019 Sep
25;36(3):143-153. doi: 10.5511/plantbiotechnology.19.0603a. PMID: 31768116;
PMCID: PMC6854337.
3: Ueda M, Matsui A, Watanabe S, Kobayashi M, Saito K, Tanaka M, Ishida J,
Kusano M, Seo M, Seki M. Transcriptome Analysis of the Hierarchical Response of
Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity
Stress. Front Plant Sci. 2019 Oct 18;10:1323. doi: 10.3389/fpls.2019.01323.
PMID: 31681394; PMCID: PMC6813852.
4: Sulieman S, Kusano M, Ha CV, Watanabe Y, Abdalla MA, Abdelrahman M,
Kobayashi M, Saito K, Muhling KH, Tran LP. Divergent metabolic adjustments in
nodules are indispensable for efficient N<sub>2</sub> fixation of soybean under
phosphate stress. Plant Sci. 2019 Dec;289:110249. doi:
10.1016/j.plantsci.2019.110249. Epub 2019 Sep 3. PMID: 31623782.
2018
1: Ohashi M, Ishiyama K, Kusano M, Fukushima A, Kojima S, Hayakawa T, Yamaya T.
Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2
causes tiller outgrowth cessation in rice mutants lacking glutamine
synthetase1;2. Rice (N Y). 2018 Dec 22;11(1):65. doi: 10.1186/s12284-018-0261-y.
PMID: 30578468; PMCID: PMC6303225.
2: Fukushima A, Hikosaka S, Kobayashi M, Nishizawa T, Saito K, Goto E, Kusano
M. A Systems Analysis With "Simplified Source-Sink Model" Reveals Metabolic
Reprogramming in a Pair of Source-to-Sink Organs During Early Fruit Development
in Tomato by LED Light Treatments. Front Plant Sci. 2018 Oct 9;9:1439. doi:
10.3389/fpls.2018.01439. PMID: 30364178; PMCID: PMC6191670.
3: Okabe Y, Yamaoka T, Ariizumi T, Ushijima K, Kojima M, Takebayashi Y,
Sakakibara H, Kusano M, Shinozaki Y, Pulungan SI, Kubo Y, Nakano R, Ezura H.
Aberrant Stamen Development is Associated with Parthenocarpic Fruit Set Through
Up-Regulation of Gibberellin Biosynthesis in Tomato. Plant Cell Physiol. 2019
Jan 1;60(1):38-51. doi: 10.1093/pcp/pcy184. PMID: 30192961.
4: Wang N, Chen H, Nonaka S, Sato-Izawa K, Kusano M, Ezura H. Ethylene
biosynthesis controlled by NON-RIPENING: A regulatory conflict between wounding
and ripening. Plant Physiol Biochem. 2018 Nov;132:720-726. doi:
10.1016/j.plaphy.2018.07.034. Epub 2018 Aug 16. PMID: 30150109.
5: Iwase A, Mita K, Favero DS, Mitsuda N, Sasaki R, Kobayshi M, Takebayashi Y,
Kojima M, Kusano M, Oikawa A, Sakakibara H, Saito K, Imamura J, Sugimoto K.
WIND1 induces dynamic metabolomic reprogramming during regeneration in Brassica
napus. Dev Biol. 2018 Oct 1;442(1):40-52. doi: 10.1016/j.ydbio.2018.07.006. Epub
2018 Jul 17. PMID: 30026120.
6: Tamura Y, Mori T, Nakabayashi R, Kobayashi M, Saito K, Okazaki S, Wang N,
Kusano M. Metabolomic Evaluation of the Quality of Leaf Lettuce Grown in
Practical Plant Factory to Capture Metabolite Signature. Front Plant Sci. 2018
Jun 27;9:665. doi: 10.3389/fpls.2018.00665. PMID: 29997631; PMCID: PMC6030546.
7: Kitazaki K, Fukushima A, Nakabayashi R, Okazaki Y, Kobayashi M, Mori T,
Nishizawa T, Reyes-Chin-Wo S, Michelmore RW, Saito K, Shoji K, Kusano M.
Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and
Intensity Conditions Using Narrow-Band LEDs. Sci Rep. 2018 May 21;8(1):7914.
doi: 10.1038/s41598-018-25686-0. PMID: 29784957; PMCID: PMC5962576.
8: Horikoshi HM, Sekozawa Y, Kobayashi M, Saito K, Kusano M, Sugaya S.
Metabolomics analysis of 'Housui' Japanese pear flower buds during endodormancy
reveals metabolic suppression by thermal fluctuation. Plant Physiol Biochem.
2018 May;126:134-141. doi: 10.1016/j.plaphy.2018.02.028. Epub 2018 Mar 2. PMID:
9: Ichihashi Y, Kusano M, Kobayashi M, Suetsugu K, Yoshida S, Wakatake T,
Kumaishi K, Shibata A, Saito K, Shirasu K. Transcriptomic and Metabolomic
Reprogramming from Roots to Haustoria in the Parasitic Plant, Thesium chinense.
Plant Cell Physiol. 2018 Apr 1;59(4):724-733. doi: 10.1093/pcp/pcx200. Erratum
in: Plant Cell Physiol. 2018 Apr 1;59(4):876. PMID: 29281058; PMCID: PMC6018956.
2017
1: Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M,
Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y, Matsushita T. Light
Controls Protein Localization through Phytochrome-Mediated Alternative Promoter
Selection. Cell. 2017 Nov 30;171(6):1316-1325.e12. doi:
10.1016/j.cell.2017.10.018. Epub 2017 Nov 9. PMID: 29129375.
2: Kuroha T, Nagai K, Kurokawa Y, Nagamura Y, Kusano M, Yasui H, Ashikari M,
Fukushima A. eQTLs Regulating Transcript Variations Associated with Rapid
Internode Elongation in Deepwater Rice. Front Plant Sci. 2017 Oct 13;8:1753.
doi: 10.3389/fpls.2017.01753. PMID: 29081784; PMCID: PMC5645499.
3: Fukushima A, Iwasa M, Nakabayashi R, Kobayashi M, Nishizawa T, Okazaki Y,
Saito K, Kusano M. Effects of Combined Low Glutathione with Mild Oxidative and
Low Phosphorus Stress on the Metabolism of Arabidopsis thaliana. Front
Plant Sci. 2017 Aug 28;8:1464. doi: 10.3389/fpls.2017.01464. PMID: 28894456;
PMCID: PMC5581396.
4: Kim JM, To TK, Matsui A, Tanoi K, Kobayashi NI, Matsuda F, Habu Y, Ogawa D,
Sakamoto T, Matsunaga S, Bashir K, Rasheed S, Ando M, Takeda H, Kawaura K,
Kusano M, Fukushima A, Takaho A E, Kuromori T, Ishida J, Morosawa T, Tanaka M,
Torii C, Takebayashi Y, Sakakibara H, Ogihara Y, Saito K, Shinozaki K, Devoto A,
Seki M. Erratum: Acetate-mediated novel survival strategy against drought in
plants. Nat Plants. 2017 Jul 17;3:17119. doi: 10.1038/nplants.2017.119. Erratum
for: Nat Plants. 2017 Jun 26;3:17097. PMID: 28714955.
5: Kim JM, To TK, Matsui A, Tanoi K, Kobayashi NI, Matsuda F, Habu Y, Ogawa D,
Sakamoto T, Matsunaga S, Bashir K, Rasheed S, Ando M, Takeda H, Kawaura K,
Kusano M, Fukushima A, Endo TA, Kuromori T, Ishida J, Morosawa T, Tanaka M,
Torii C, Takebayashi Y, Sakakibara H, Ogihara Y, Saito K, Shinozaki K, Devoto A,
Seki M. Acetate-mediated novel survival strategy against drought in plants. Nat
Plants. 2017 Jun 26;3:17097. doi: 10.1038/nplants.2017.97. Erratum in: Nat
Plants. 2017 Jul 17;3:17119. PMID: 28650429.
6: Selvaraj MG, Ishizaki T, Valencia M, Ogawa S, Dedicova B, Ogata T, Yoshiwara
K, Maruyama K, Kusano M, Saito K, Takahashi F, Shinozaki K, Nakashima K,
Ishitani M. Overexpression of an Arabidopsis thaliana galactinol synthase gene
improves drought tolerance in transgenic rice and increased grain yield in the
field. Plant Biotechnol J. 2017 Nov;15(11):1465-1477. doi: 10.1111/pbi.12731.
Epub 2017 May 3. PMID: 28378532; PMCID: PMC5633756.
7: Adams E, Miyazaki T, Hayaishi-Satoh A, Han M, Kusano M, Khandelia H, Saito
K, Shin R. A novel role for methyl cysteinate, a cysteine derivative, in cesium
accumulation in Arabidopsis thaliana. Sci Rep. 2017 Feb 23;7:43170. doi:
10.1038/srep43170. PMID: 28230101; PMCID: PMC5322390.
2016
1: Nasr Esfahani M, Kusano M, Nguyen KH, Watanabe Y, Ha CV, Saito K, Sulieman
S, Herrera-Estrella L, Tran LS. Adaptation of the symbiotic Mesorhizobium-
chickpea relationship to phosphate deficiency relies on reprogramming of whole-
plant metabolism. Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):E4610-9. doi:
10.1073/pnas.1609440113. Epub 2016 Jul 22. PMID: 27450089; PMCID: PMC4987776.
2: Kusano M, Kobayashi M, Iizuka Y, Fukushima A, Saito K. Unbiased profiling of
volatile organic compounds in the headspace of Allium plants using an in-tube
extraction device. BMC Res Notes. 2016 Feb 29;9:133. doi:
10.1186/s13104-016-1942-5. PMID: 26928722; PMCID: PMC4772445.
3: Matsushima R, Maekawa M, Kusano M, Tomita K, Kondo H, Nishimura H, Crofts N,
Fujita N, Sakamoto W. Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6
Controls Starch Grain Size in Rice Endosperm. Plant Physiol. 2016
Mar;170(3):1445-59. doi: 10.1104/pp.15.01811. Epub 2016 Jan 20. PMID: 26792122;
PMCID: PMC4775137.
4: Toyosawa Y, Kawagoe Y, Matsushima R, Crofts N, Ogawa M, Fukuda M, Kumamaru
T, Okazaki Y, Kusano M, Saito K, Toyooka K, Sato M, Ai Y, Jane JL, Nakamura Y,
Fujita N. Deficiency of Starch Synthase IIIa and IVb Alters Starch Granule
Morphology from Polyhedral to Spherical in Rice Endosperm. Plant Physiol. 2016
Mar;170(3):1255-70. doi: 10.1104/pp.15.01232. Epub 2016 Jan 8. PMID: 26747287;
PMCID: PMC4775109.
2015
1: Sako K, Kim JM, Matsui A, Nakamura K, Tanaka M, Kobayashi M, Saito K,
Nishino N, Kusano M, Taji T, Yoshida M, Seki M. Ky-2, a Histone Deacetylase
Inhibitor, Enhances High-Salinity Stress Tolerance in Arabidopsis thaliana.
Plant Cell Physiol. 2016 Apr;57(4):776-83. doi: 10.1093/pcp/pcv199. Epub 2015
Dec 12. PMID: 26657894.
2: Takayama M, Koike S, Kusano M, Matsukura C, Saito K, Ariizumi T, Ezura H.
Tomato Glutamate Decarboxylase Genes SlGAD2 and SlGAD3 Play Key Roles in
Regulating Îł-Aminobutyric Acid Levels in Tomato (Solanum lycopersicum). Plant
Cell Physiol. 2015 Aug;56(8):1533-45. doi: 10.1093/pcp/pcv075. Epub 2015 May 25.
PMID: 26009591.
3: Clevenger JP, Van Houten J, Blackwood M, Rodriguez GR, Jikumaru Y, Kamiya Y,
Kusano M, Saito K, Visa S, van der Knaap E. Network Analyses Reveal Shifts in
Transcript Profiles and Metabolites That Accompany the Expression of SUN and an
Elongated Tomato Fruit. Plant Physiol. 2015 Jul;168(3):1164-78. doi:
10.1104/pp.15.00379. Epub 2015 May 4. PMID: 25941316; PMCID: PMC4741315.
4: Kusuda H, Koga W, Kusano M, Oikawa A, Saito K, Hirai MY, Yoshida KT. Ectopic
expression of myo-inositol 3-phosphate synthase induces a wide range of
metabolic changes and confers salt tolerance in rice. Plant Sci. 2015
Mar;232:49-56. doi: 10.1016/j.plantsci.2014.12.009. Epub 2014 Dec 18. PMID:
5: Kusano M, Yang Z, Okazaki Y, Nakabayashi R, Fukushima A, Saito K. Using
metabolomic approaches to explore chemical diversity in rice. Mol Plant. 2015
Jan;8(1):58-67. doi: 10.1016/j.molp.2014.11.010. Epub 2014 Dec 11. PMID:
2014
1: Ohashi M, Ishiyama K, Kusano M, Fukushima A, Kojima S, Hanada A, Kanno K,
Hayakawa T, Seto Y, Kyozuka J, Yamaguchi S, Yamaya T. Lack of cytosolic
glutamine synthetase1;2 in vascular tissues of axillary buds causes severe
reduction in their outgrowth and disorder of metabolic balance in rice
seedlings. Plant J. 2015 Jan;81(2):347-56. doi: 10.1111/tpj.12731. Epub 2014 Dec
20. PMID: 25429996.
2: Kusano M, Yang Z, Okazaki Y, Nakabayashi R, Fukushima A, Saito K. Using
metabolomic approaches to explore chemical diversity in rice. Mol Plant. 2014
Nov 3:ssu125. doi: 10.1093/mp/ssu125. Epub ahead of print. PMID: 25366178.
3: Fukushima A, Kusano M. A network perspective on nitrogen metabolism from
model to crop plants using integrated 'omics' approaches. J Exp Bot. 2014
Oct;65(19):5619-30. doi: 10.1093/jxb/eru322. Epub 2014 Aug 16. PMID: 25129130.
4: Fukushima A, Kusano M, Mejia RF, Iwasa M, Kobayashi M, Hayashi N, Watanabe-
Takahashi A, Narisawa T, Tohge T, Hur M, Wurtele ES, Nikolau BJ, Saito K.
Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of
a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant
Physiol. 2014 Jul;165(3):948-961. doi: 10.1104/pp.114.240986. Epub 2014 May 14.
PMID: 24828308; PMCID: PMC4081348.
5: Satou M, Enoki H, Oikawa A, Ohta D, Saito K, Hachiya T, Sakakibara H, Kusano
M, Fukushima A, Saito K, Kobayashi M, Nagata N, Myouga F, Shinozaki K, Motohashi
R. Integrated analysis of transcriptome and metabolome of Arabidopsis albino or
pale green mutants with disrupted nuclear-encoded chloroplast proteins. Plant
Mol Biol. 2014 Jul;85(4-5):411-28. doi: 10.1007/s11103-014-0194-9. Epub 2014 May
3. PMID: 24793022; PMCID: PMC4052017.
6: Yamaya T, Kusano M. Evidence supporting distinct functions of three
cytosolic glutamine synthetases and two NADH-glutamate synthases in rice. J Exp
Bot. 2014 Oct;65(19):5519-25. doi: 10.1093/jxb/eru103. Epub 2014 Mar 14. PMID:
7: Matsushima R, Maekawa M, Kusano M, Kondo H, Fujita N, Kawagoe Y, Sakamoto W.
Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of
starch grains in rice endosperm. Plant Physiol. 2014 Feb;164(2):623-36. doi:
10.1104/pp.113.229591. Epub 2013 Dec 13. PMID: 24335509; PMCID: PMC3912094.
8: Zhou J, Yang Y, Yu J, Wang L, Yu X, Ohtani M, Kusano M, Saito K, Demura T,
Zhuge Q. Responses of Populus trichocarpa galactinol synthase genes to abiotic
stresses. J Plant Res. 2014 Mar;127(2):347-58. doi: 10.1007/s10265-013-0597-8.
Epub 2013 Nov 5. PMID: 24190064; PMCID: PMC3932401.
2013
1: Kimbara J, Yoshida M, Ito H, Kitagawa M, Takada W, Hayashi K, Shibutani Y,
Kusano M, Okazaki Y, Nakabayashi R, Mori T, Saito K, Ariizumi T, Ezura H.
Inhibition of CUTIN DEFICIENT 2 Causes Defects in Cuticle Function and Structure
and Metabolite Changes in Tomato Fruit. Plant Cell Physiol. 2013
Sep;54(9):1535-48. doi: 10.1093/pcp/pct100. Epub 2013 Aug 2. PMID: 23912028.
2: Kusano M, Fukushima A. Current challenges and future potential of tomato
breeding using omics approaches. Breed Sci. 2013 Mar;63(1):31-41. doi:
10.1270/jsbbs.63.31. Epub 2013 Mar 1. PMID: 23641179; PMCID: PMC3621443.
3: Fukushima A, Kusano M. Recent progress in the development of metabolome
databases for plant systems biology. Front Plant Sci. 2013 Apr 4;4:73. doi:
10.3389/fpls.2013.00073. PMID: 23577015; PMCID: PMC3616245.
4: Okazaki Y, Otsuki H, Narisawa T, Kobayashi M, Sawai S, Kamide Y, Kusano M,
Aoki T, Hirai MY, Saito K. A new class of plant lipid is essential for
protection against phosphorus depletion. Nat Commun. 2013;4:1510. doi:
10.1038/ncomms2512. PMID: 23443538; PMCID: PMC3586718.
5: Kusano M, Iizuka Y, Kobayashi M, Fukushima A, Saito K. Development of a
Direct Headspace Collection Method from Arabidopsis Seedlings Using HS-SPME-GC-
TOF-MS Analysis. Metabolites. 2013 Apr 9;3(2):223-42. doi:
10.3390/metabo3020223. PMID: 24957989; PMCID: PMC3901263.
2012
1: Kim J, Choi JN, John KM, Kusano M, Oikawa A, Saito K, Lee CH. GC-TOF-MS- and
CE-TOF-MS-based metabolic profiling of cheonggukjang (fast-fermented bean paste)
during fermentation and its correlation with metabolic pathways. J Agric Food
Chem. 2012 Sep 26;60(38):9746-53. doi: 10.1021/jf302833y. Epub 2012 Sep 18.
PMID: 22913417.
2: Kimbara J, Yoshida M, Ito H, Hosoi K, Kusano M, Kobayashi M, Ariizumi T,
Asamizu E, Ezura H. A novel class of sticky peel and light green mutations
causes cuticle deficiency in leaves and fruits of tomato (Solanum lycopersicum).
Planta. 2012 Nov;236(5):1559-70. doi: 10.1007/s00425-012-1719-6. Epub 2012 Jul
27. PMID: 22837053.
3: Fukushima A, Nishizawa T, Hayakumo M, Hikosaka S, Saito K, Goto E, Kusano M.
Exploring tomato gene functions based on coexpression modules using graph
clustering and differential coexpression approaches. Plant Physiol. 2012
Apr;158(4):1487-502. doi: 10.1104/pp.111.188367. Epub 2012 Feb 3. PMID:
22307966; PMCID: PMC3343727.
4: Matsuda F, Okazaki Y, Oikawa A, Kusano M, Nakabayashi R, Kikuchi J, Yonemaru
J, Ebana K, Yano M, Saito K. Dissection of genotype-phenotype associations in
rice grains using metabolome quantitative trait loci analysis. Plant J. 2012
May;70(4):624-36. doi: 10.1111/j.1365-313X.2012.04903.x. Epub 2012 Feb 10. PMID:
5: Kusano M, Fukushima A, Fujita N, Okazaki Y, Kobayashi M, Oitome NF, Ebana K,
Saito K. Deciphering starch quality of rice kernels using metabolite profiling
and pedigree network analysis. Mol Plant. 2012 Mar;5(2):442-51. doi:
10.1093/mp/ssr101. Epub 2011 Dec 15. PMID: 22180466.
2011
1: Tohge T, Kusano M, Fukushima A, Saito K, Fernie AR. Transcriptional and
metabolic programs following exposure of plants to UV-B irradiation. Plant
Signal Behav. 2011 Dec;6(12):1987-92. doi: 10.4161/psb.6.12.18240. PMID:
22112450; PMCID: PMC3337192.
2: Diaz C, Kusano M, Sulpice R, Araki M, Redestig H, Saito K, Stitt M, Shin R.
Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic
processes. BMC Syst Biol. 2011 Nov 21;5:192. doi: 10.1186/1752-0509-5-192. PMID:
22104211; PMCID: PMC3253775.
3: Redestig H, Kusano M, Ebana K, Kobayashi M, Oikawa A, Okazaki Y, Matsuda F,
Arita M, Fujita N, Saito K. Exploring molecular backgrounds of quality traits in
rice by predictive models based on high-coverage metabolomics. BMC Syst Biol.
2011 Oct 28;5:176. doi: 10.1186/1752-0509-5-176. PMID: 22034874; PMCID:
PMC3305925.
4: Toyokura K, Watanabe K, Oiwaka A, Kusano M, Tameshige T, Tatematsu K,
Matsumoto N, Tsugeki R, Saito K, Okada K. Succinic semialdehyde dehydrogenase is
involved in the robust patterning of Arabidopsis leaves along the adaxial-
abaxial axis. Plant Cell Physiol. 2011 Aug;52(8):1340-53. doi:
10.1093/pcp/pcr079. Epub 2011 Jun 20. PMID: 21690177.
5: Redestig H, Kobayashi M, Saito K, Kusano M. Exploring matrix effects and
quantification performance in metabolomics experiments using artificial
biological gradients. Anal Chem. 2011 Jul 15;83(14):5645-51. doi:
10.1021/ac200786y. Epub 2011 Jun 28. PMID: 21630645.
6: Akai M, Onai K, Kusano M, Sato M, Redestig H, Toyooka K, Morishita M, Miyake
H, Hazama A, Checchetto V, Szabo I, Matsuoka K, Saito K, Yasui M, Ishiura M,
Uozumi N. Plasma membrane aquaporin AqpZ protein is essential for glucose
metabolism during photomixotrophic growth of Synechocystis sp. PCC 6803. J Biol
Chem. 2011 Jul 15;286(28):25224-35. doi: 10.1074/jbc.M111.236380. Epub 2011 May
10. PMID: 21558269; PMCID: PMC3137093.
7: Kusano M, Tohge T, Fukushima A, Kobayashi M, Hayashi N, Otsuki H, Kondou Y,
Goto H, Kawashima M, Matsuda F, Niida R, Matsui M, Saito K, Fernie AR.
Metabolomics reveals comprehensive reprogramming involving two independent
metabolic responses of Arabidopsis to UV-B light. Plant J. 2011
Jul;67(2):354-69. doi: 10.1111/j.1365-313X.2011.04599.x. Epub 2011 May 20. PMID:
8: Kusano M, Redestig H, Hirai T, Oikawa A, Matsuda F, Fukushima A, Arita M,
Watanabe S, Yano M, Hiwasa-Tanase K, Ezura H, Saito K. Covering chemical
diversity of genetically-modified tomatoes using metabolomics for objective
substantial equivalence assessment. PLoS One. 2011 Feb 16;6(2):e16989. doi:
10.1371/journal.pone.0016989. PMID: 21359231; PMCID: PMC3040210.
9: Kusano M, Tabuchi M, Fukushima A, Funayama K, Diaz C, Kobayashi M, Hayashi
N, Tsuchiya YN, Takahashi H, Kamata A, Yamaya T, Saito K. Metabolomics data
reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating
metabolic balance in rice. Plant J. 2011 May;66(3):456-66. doi:
10.1111/j.1365-313X.2011.04506.x. Epub 2011 Feb 21. PMID: 21255162.
10: Kusano M, Fukushima A, Redestig H, Saito K. Metabolomic approaches toward
understanding nitrogen metabolism in plants. J Exp Bot. 2011 Feb;62(4):1439-53.
doi: 10.1093/jxb/erq417. Epub 2011 Jan 10. PMID: 21220784.
11: Fukushima A, Kusano M, Redestig H, Arita M, Saito K. Metabolomic
correlation-network modules in Arabidopsis based on a graph-clustering approach.
BMC Syst Biol. 2011 Jan 1;5:1. doi: 10.1186/1752-0509-5-1. PMID: 21194489;
PMCID: PMC3030539.
12: Kusano M, Jonsson P, Fukushima A, Gullberg J, Sjostrom M, Trygg J, Moritz T.
Metabolite Signature during Short-Day Induced Growth Cessation in Populus. Front
Plant Sci. 2011 Jul 12;2:29. doi: 10.3389/fpls.2011.00029. PMID: 22629261;
PMCID: PMC3355535.
13: Sakurai T, Kondou Y, Akiyama K, Kurotani A, Higuchi M, Ichikawa T, Kuroda H,
Kusano M, Mori M, Saitou T, Sakakibara H, Sugano S, Suzuki M, Takahashi H,
Takahashi S, Takatsuji H, Yokotani N, Yoshizumi T, Saito K, Shinozaki K, Oda K,
Hirochika H, Matsui M. RiceFOX: a database of Arabidopsis mutant lines
overexpressing rice full-length cDNA that contains a wide range of trait
information to facilitate analysis of gene function. Plant Cell Physiol. 2011
Feb;52(2):265-73. doi: 10.1093/pcp/pcq190. Epub 2010 Dec 23. PMID: 21186176;
PMCID: PMC3037076.
14: Ide Y, Kusano M, Oikawa A, Fukushima A, Tomatsu H, Saito K, Hirai MY,
Fujiwara T. Effects of molybdenum deficiency and defects in molybdate
transporter MOT1 on transcript accumulation and nitrogen/sulphur metabolism in
Arabidopsis thaliana. J Exp Bot. 2011 Feb;62(4):1483-97. doi:
10.1093/jxb/erq345. Epub 2010 Dec 3. PMID: 21131548.
2010
1: Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K,
Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y,
Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai
N, Suzuki H, Shibata D, Neumann S, Iida T, Tanaka K, Funatsu K, Matsuura F, Soga
T, Taguchi R, Saito K, Nishioka T. MassBank: a public repository for sharing
mass spectral data for life sciences. J Mass Spectrom. 2010 Jul;45(7):703-14.
doi: 10.1002/jms.1777. PMID: 20623627.
2: Redestig H, Kusano M, Fukushima A, Matsuda F, Saito K, Arita M.
Consolidating metabolite identifiers to enable contextual and multi-platform
metabolomics data analysis. BMC Bioinformatics. 2010 Apr 29;11:214. doi:
10.1186/1471-2105-11-214. PMID: 20426876; PMCID: PMC2879285.
3: Kusano M, Fukushima A, Redestig H, Kobayashi M, Otsuki H, Onouchi H, Naito
S, Hirai MY, Saito K. Comparative metabolomics charts the impact of genotype-
dependent methionine accumulation in Arabidopsis thaliana. Amino Acids. 2010
Oct;39(4):1013-21. doi: 10.1007/s00726-010-0562-y. Epub 2010 Mar 31. PMID:
4: Masumoto C, Miyazawa S, Ohkawa H, Fukuda T, Taniguchi Y, Murayama S, Kusano
M, Saito K, Fukayama H, Miyao M. Phosphoenolpyruvate carboxylase intrinsically
located in the chloroplast of rice plays a crucial role in ammonium
assimilation. Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5226-31. doi:
10.1073/pnas.0913127107. Epub 2010 Mar 1. PMID: 20194759; PMCID: PMC2841899.
2009
1: Albinsky D, Kusano M, Higuchi M, Hayashi N, Kobayashi M, Fukushima A, Mori
M, Ichikawa T, Matsui K, Kuroda H, Horii Y, Tsumoto Y, Sakakibara H, Hirochika
H, Matsui M, Saito K. Metabolomic screening applied to rice FOX Arabidopsis
lines leads to the identification of a gene-changing nitrogen metabolism. Mol
Plant. 2010 Jan;3(1):125-42. doi: 10.1093/mp/ssp069. Epub 2009 Aug 26. PMID:
2: Cuadros-Inostroza A, Caldana C, Redestig H, Kusano M, Lisec J, Pena-Cortes
H, Willmitzer L, Hannah MA. TargetSearch--a Bioconductor package for the
efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics.
2009 Dec 16;10:428. doi: 10.1186/1471-2105-10-428. PMID: 20015393; PMCID:
PMC3087348.
3: Fukushima A, Kusano M, Redestig H, Arita M, Saito K. Integrated omics
approaches in plant systems biology. Curr Opin Chem Biol. 2009
Dec;13(5-6):532-8. doi: 10.1016/j.cbpa.2009.09.022. PMID: 19837627.
4: Nakamichi N, Fukushima A, Kusano M, Sakakibara H, Mizuno T, Saito K. Linkage
between circadian clock and tricarboxylic acid cycle in Arabidopsis. Plant
Signal Behav. 2009 Jul;4(7):660-2. doi: 10.1073/pnas.0900952106. Epub 2009 Jul
13. PMID: 19820331; PMCID: PMC2710568.
5: Yoshimoto K, Jikumaru Y, Kamiya Y, Kusano M, Consonni C, Panstruga R, Ohsumi
Y, Shirasu K. Autophagy negatively regulates cell death by controlling
NPR1-dependent salicylic acid signaling during senescence and the innate immune
response in Arabidopsis. Plant Cell. 2009 Sep;21(9):2914-27. doi:
10.1105/tpc.109.068635. Epub 2009 Sep 22. PMID: 19773385; PMCID: PMC2768913.
6: Redestig H, Fukushima A, Stenlund H, Moritz T, Arita M, Saito K, Kusano M.
Compensation for systematic cross-contribution improves normalization of mass
spectrometry based metabolomics data. Anal Chem. 2009 Oct 1;81(19):7974-80. doi:
10.1021/ac901143w. PMID: 19743813.
7: Nakabayashi R, Kusano M, Kobayashi M, Tohge T, Yonekura-Sakakibara K, Kogure
N, Yamazaki M, Kitajima M, Saito K, Takayama H. Metabolomics-oriented isolation
and structure elucidation of 37 compounds including two anthocyanins from
Arabidopsis thaliana. Phytochemistry. 2009 May;70(8):1017-29. doi:
10.1016/j.phytochem.2009.03.021. Epub 2009 Jun 3. PMID: 19497599.
8: Fukushima A, Kusano M, Nakamichi N, Kobayashi M, Hayashi N, Sakakibara H,
Mizuno T, Saito K. Impact of clock-associated Arabidopsis pseudo-response
regulators in metabolic coordination. Proc Natl Acad Sci U S A. 2009 Apr
28;106(17):7251-6. doi: 10.1073/pnas.0900952106. Epub 2009 Apr 9. Erratum in:
Proc Natl Acad Sci U S A. 2009 May 26;106(21):8791. PMID: 19359492; PMCID:
PMC2667372.
9: Nakamichi N, Kusano M, Fukushima A, Kita M, Ito S, Yamashino T, Saito K,
Sakakibara H, Mizuno T. Transcript profiling of an Arabidopsis PSEUDO RESPONSE
REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in
cold stress response. Plant Cell Physiol. 2009 Mar;50(3):447-62. doi:
10.1093/pcp/pcp004. Epub 2009 Jan 8. PMID: 19131357.
10: Kondou Y, Higuchi M, Takahashi S, Sakurai T, Ichikawa T, Kuroda H, Yoshizumi
T, Tsumoto Y, Horii Y, Kawashima M, Hasegawa Y, Kuriyama T, Matsui K, Kusano M,
Albinsky D, Takahashi H, Nakamura Y, Suzuki M, Sakakibara H, Kojima M, Akiyama
K, Kurotani A, Seki M, Fujita M, Enju A, Yokotani N, Saitou T, Ashidate K,
Fujimoto N, Ishikawa Y, Mori Y, Nanba R, Takata K, Uno K, Sugano S, Natsuki J,
Dubouzet JG, Maeda S, Ohtake M, Mori M, Oda K, Takatsuji H, Hirochika H, Matsui
M. Systematic approaches to using the FOX hunting system to identify useful rice
genes. Plant J. 2009 Mar;57(5):883-94. doi: 10.1111/j.1365-313X.2008.03733.x.
Epub 2008 Oct 29. PMID: 18980645.
2008
1: Watanabe M, Kusano M, Oikawa A, Fukushima A, Noji M, Saito K. Physiological
roles of the beta-substituted alanine synthase gene family in Arabidopsis. Plant
Physiol. 2008 Jan;146(1):310-20. doi: 10.1104/pp.107.106831. Epub 2007 Nov 16.
PMID: 18024555; PMCID: PMC2230570.
2007
1: Kusano M, Fukushima A, Arita M, Jonsson P, Moritz T, Kobayashi M, Hayashi N,
Tohge T, Saito K. Unbiased characterization of genotype-dependent metabolic
regulations by metabolomic approach in Arabidopsis thaliana. BMC Syst Biol. 2007
Nov 21;1:53. doi: 10.1186/1752-0509-1-53. PMID: 18028551; PMCID: PMC2233643.
2: Bylesjo M, Eriksson D, Kusano M, Moritz T, Trygg J. Data integration in
plant biology: the O2PLS method for combined modeling of transcript and
metabolite data. Plant J. 2007 Dec;52(6):1181-91. doi:
10.1111/j.1365-313X.2007.03293.x. Epub 2007 Oct 10. PMID: 17931352.
3: Kusano M, Fukushima A, Kobayashi M, Hayashi N, Jonsson P, Moritz T, Ebana K,
Saito K. Application of a metabolomic method combining one-dimensional and two-
dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic
phenotyping of natural variants in rice. J Chromatogr B Analyt Technol Biomed
Life Sci. 2007 Aug;855(1):71-9. doi: 10.1016/j.jchromb.2007.05.002. Epub 2007
May 16. PMID: 17556050.
2006
1: Jonsson P, Johansson ES, Wuolikainen A, Lindberg J, Schuppe-Koistinen I,
Kusano M, Sjostrom M, Trygg J, Moritz T, Antti H. Predictive metabolite
profiling applying hierarchical multivariate curve resolution to GC-MS data--a
potential tool for multi-parametric diagnosis. J Proteome Res. 2006
Jun;5(6):1407-14. doi: 10.1021/pr0600071. PMID: 16739992.
2005
1: Kimura Y, Sawada A, Kuramata M, Kusano M, Fujioka S, Kawano T, Shimada A.
Brevicompanine C, cyclo-(D-Ile-L-Trp), and cyclo-(D-Leu-L-Trp), plant growth
regulators from Penicillium brevi-compactum. J Nat Prod. 2005 Feb;68(2):237-9.
doi: 10.1021/np040178p. PMID: 15730251.
2: Hanai H, Ishida S, Saito C, Maita T, Kusano M, Tamogami S, Noma M.
Stimulation of mycelia growth in several mushroom species by rice husks. Biosci
Biotechnol Biochem. 2005 Jan;69(1):123-7. doi: 10.1271/bbb.69.123. PMID:
2004
1: Shimada A, Inokuchi T, Kusano M, Takeuchi S, Inoue R, Tanita M, Fujioka S,
Kimura Y. 4-Hydroxykigelin and 6-demethylkigelin, root growth promoters,
produced by Aspergillus terreus. Z Naturforsch C J Biosci. 2004 Mar-
Apr;59(3-4):218-22. doi: 10.1515/znc-2004-3-417. PMID: 15241930.
2: Jonsson P, Gullberg J, Nordstrom A, Kusano M, Kowalczyk M, Sjostrom M,
Moritz T. A strategy for identifying differences in large series of metabolomic
samples analyzed by GC/MS. Anal Chem. 2004 Mar 15;76(6):1738-45. doi:
10.1021/ac0352427. PMID: 15018577.
3: Nakahara S, Kusano M, Fujioka S, Shimada A, Kimura Y. Penipratynolene, a
novel nematicide from penicillium bilaiae Chalabuda. Biosci Biotechnol Biochem.
2004 Jan;68(1):257-9. doi: 10.1271/bbb.68.257. PMID: 14745197.
2003
1: Kusano M, Nakagami K, Fujioka S, Kawano T, Shimada A, Kimura Y. Betagamma-
dehydrocurvularin and related compounds as nematicides of Pratylenchus penetrans
from the fungus Aspergillus sp. Biosci Biotechnol Biochem. 2003
Jun;67(6):1413-6. doi: 10.1271/bbb.67.1413. PMID: 12843675.
2: Shimada A, Shiokawa C, Kusano M, Fujioka S, Kimura Y. Hydroxysulochrin, a
tea pollen growth inhibitor from the fungus Aureobasidium sp. Biosci Biotechnol
Biochem. 2003 Feb;67(2):442-4. doi: 10.1271/bbb.67.442. PMID: 12729018.
2002
1: Shimada A, Kusano M, Takeuchi S, Fujioka S, Inokuchi T, Kimura Y. Aspterric
acid and 6-hydroxymellein, inhibitors of pollen development in Arabidopsis
thaliana, produced by Aspergillus terreus. Z Naturforsch C J Biosci. 2002 May-
Jun;57(5-6):459-64. doi: 10.1515/znc-2002-5-610. PMID: 12132685.
2: Kimura Y, Shimada A, Kusano M, Yoshii K, Morita A, Nishibe M, Fujioka S,
Kawano T. Myxostiolide, myxostiol, and clavatoic acid, plant growth regulators
from the fungus Myxotrichum stipitatum. J Nat Prod. 2002 Apr;65(4):621-3. doi:
10.1021/np010600r. PMID: 11975519.
2001
1:
Non-peer-reviewed journal articles
########
Books and Book chapters
#######
press release
#######