Conference Publications
Cornelis, L., Mathe, J., Van Langendonck, L., Bernárdez, G.*, Miolane, N.* 2026. "OgBench: Benchmarking Graph Neural Networks on Omics Data." || NeurIPS, Evaluations and Datasets 2026. [Project Homepage]
Bernárdez, G., Montagna, M., Van Langendonck, L., Carrasco, M., Akbari, A., Cornelis, L., Papillon, M., Barlet-Ros, P., Miolane, N., Telyatnikov, L. 2026. "HOPSE: Scalable Higher-Order Positional and Structural Encoder for Combinatorial Representations." || NeurIPS 2026. [Paper]
Cornelis, L., Bernárdez, G., Jeong, H., Miolane, N. 2026. "When Machine Learning Gets Personal: Evaluating Prediction and Explanation." || In Proceedings of the Fourteenth International Conference on Learning Representations (ICLR).
Bernárdez, G., Telyatnikov, L., Papillon, M., Montagna, M., Theiler, R., Cornelis, L., Mathe, J., ..., Jardin, A., Emerson, T., Fink, O., Miolane, N. 2026. "Topological Deep Learning Challenge 2025: Expanding the Data Landscape." || In Proceedings of the 1st Conference on Topology, Algebra, and Geometry in Data Science (TAG-DS), PMLR 321:4–14. [Paper]
Journal Publications
Wood Alexander, M., Rabin, J.S., Caunca, M., Iadipaolo, A., Cornelis, L., Warrier, R., Walker, K.A., Miolane, N., Bot, V.A., Wood, B., Oh, H.S.-H., Wyss-Coray, T., Pham, A., ..., Denkinger, M.N., Ashton, N.J., Johnson, S.C., Jacobs, E.G., Saloner, R.*, Casaletto, K.B.* 2026. "Blood proteomics of menopause map to brain aging and dementia risk." || Nature Medicine. [Paper]
Cornelis, L.*, Papillon, M.*, Sanborn, S.*, Mathe, J.*, Buracas, D., Lillemark, H.J., Shewmake, C., Bertics, A., Pennec, X. and Miolane, N., 2025. "Beyond Euclid: An Illustrated Guide to Modern Machine Learning with Geometric, Topological, and Algebraic Structures." || Machine Learning: Science and Technology, 6(3), 031002. [Paper]
Saloner, R., Casaletto, K.B., Rayaprolu, S., Cornelis, L., Chakrabarty, P., Abisambra, J.F., Spina, S., Grinberg, L.T., Seeley, W.W., Miller, B.L., Kramer, J.H., Rabinovici, G.D., Asken, B.M. 2025. "Interrogating the plasma proteome of repetitive head impact exposure and chronic traumatic encephalopathy." || Molecular Neurodegeneration, 20, 71. [Paper]
Under Review
Saloner, R., Cornelis, L., Downer, J., Dietz, C., Chan, B., Hughes, M., Olzinski, M., Cobigo, Y., Lario-Lago, A., Heuer, H., ... , Casaletto, K., Miller, B., Seeley, W., Rojas, J., Boxer, A. 2026 "Large-scale cerebrospinal fluid proteomics identifies diagnostic biomarker candidates across the clinico-pathological continuum of frontotemporal lobar degeneration." || Under review at Nature Medicine.
In Progress
Cornelis, L., Bernárdez, G., Casaletto, K., Papillon, M., Saloner, R.*, Miolane, N.* 2026. "Machine learning pipeline for proteomic discovery in frontotemporal dementia progression." || In progress.