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§, equal first authors; *, equal corresponding authors
2024
Adaptive traits of Nitrosocosmicus clade ammonia-oxidizing archaea
S Han§, S Kim§, CJ Sedlacek*, A Farooq, C Song, S Lee, S Liu, N Brüggemann, L Rohe, M Kwon, SK Rhee, MY Jung*
mBio. 3:e0216924
JH Im, C Choi, MY Jung, SR Park, DJ Hwang
Planta 259 (6), 124
Nitrous oxide respiration in acidophilic methanotrophs
SI Awala, JH Gwak, Y Kim, MY Jung, PF Dunfield, M Wagner, SK Rhee
Nature Communications 15 (1), 4226
Granulicatella seriolae sp. nov., a Novel Facultative Anaerobe Isolated from Yellowtail Marine Fish
M Lee, YJ Choi, A Farooq, JB Jeong, MY Jung*
Current Microbiology 81 (1), 13
2023
Kinetic, genomic, and physiological analysis reveals diversity in the ecological adaptation and metabolic potential of Brachybacterium equifaecis sp. nov. isolated from horse feces
A Farooq, M Lee, S Han, GY Jung, SJ Kim, MY Jung*
Microbiology Spectrum 11 (5), e05048-22
M Lee, A Farooq, JB Jeong, MY Jung*
Microbiology Resource Announcements 12 (4), e01352-22
2022
Ecological aerobic ammonia and methane oxidation involved key metal compounds, Fe and Cu
H Ayub, MJ Kang, A Farooq, MY Jung*
Life 12 (11), 1806
Man-Young Jung*, Christoper J. Sedlacek*, K. Dimitri Kits, Anna J. Müller, Petra Pjevac, Sung-Keun Rhee, Linda Hink, Graeme Nicol, Barbara Bayer, Laura Lehtovirta-Morley, Chloe Wright, Jose R. de la Torre, Craig Herbold, Holger Daims, Michael Wagner. Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities. ISME J. 2022 Jan;16(1):272-283.
2021
Shurong Liu, Man-Young Jung, Shasha Zhang, Michael Wagner, Holger Daims, Wolfgang Wanek. Nitrogen kinetic isotope effects of nitrification by the complete ammonia oxidizer Nitrospira inopinata. mSphere. 2021 Dec 22;6(6):e0063421.
Kim JG, Gazi KS, Awala SI, Jung MY*, Rhee SK*. Ammonia-oxidizing archaea in biological interactions. J Microbiol. 2021 Mar;59(3):298-310.
Yang Y, Herbold CW, Jung MY, Qin W, Cai M, Du H, Lin JG, Li X, Li M, Gu JD. Survival strategies of ammonia-oxidizing archaea (AOA) in a full-scale WWTP treating mixed landfill leachate containing copper ions and operating at low-intensity of aeration. Water Res. 2021 Mar 1;191:116798.
Mueller AJ, Jung MY, Strachan CR, Herbold CW, Kirkegaard RH, Wagner M, Daims H. Genomic and physiological analysis of novel Nitrospinae cultured by single-cell sorting: Insights into adaptive traits of marine nitrite oxidizers. ISME J. 2021 Mar;15(3):732-745.
2020
Gwak JH§, Jung MY§, Hong H, Kim JG, Quan ZX, Reinfelder JR, Spasov E, Neufeld JD, Wagner M, Rhee SK. Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants. ISME J. 2020 Feb;14(2):335-346.
2019
Wang B, Qin W, Ren Y, Zhou X, Jung MY, Han P, Eloe-Fadrosh EA, Li M, Zheng Y, Lu L, Yan X, Ji J, Liu Y, Liu L, Heiner C, Hall R, Martens-Habbena W, Herbold CW, Rhee SK, Bartlett DH, Huang L, Ingalls AE, Wagner M, Stahl DA, Jia Z. Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons. ISME J. 2019 Dec;13(12):3067-3079. doi: 10.1038/s41396-019-0493-x. Epub 2019 Aug 28. PubMed PMID: 31462715; PubMed Central PMCID: PMC6863869.
Kim JG, Gwak JH, Jung MY, An SU, Hyun JH, Kang S, Rhee SK. Distinct temporal dynamics of planktonic archaeal and bacterial assemblages in the bays of the Yellow Sea. PLoS One. 2019 Aug 26;14(8):e0221408. doi: 10.1371/journal.pone.0221408. eCollection 2019. PubMed PMID: 31449563; PubMed Central PMCID: PMC6709916.
Jung MY, Gwak JH, Rohe L, Giesemann A, Kim JG, Well R, Madsen EL, Herbold CW, Wagner M, Rhee SK. Indications for enzymatic denitrification to N2O at low pH in an ammonia-oxidizing archaeon. ISME J. 2019 Oct;13(10):2633-2638. doi: 10.1038/s41396-019-0460-6. Epub 2019 Jun 21. PubMed PMID: 31227816
Kits KD, Jung MY, Vierheilig J, Pjevac P, Sedlacek CJ, Liu S, Herbold C, Stein LY, Richter A, Wissel H, Brüggemann N, Wagner M, Daims H. Low yield and abiotic origin of N(2)O formed by the complete nitrifier Nitrospira inopinata. Nat Commun. 2019 Apr 23;10(1):1836. doi: 10.1038/s41467-019-09790-x. PubMed PMID: 31015413; PubMed Central PMCID: PMC6478695.
Kim SJ§, Kim JG§, Lee SH, Park SJ, Gwak JH, Jung MY, Chung WH, Yang EJ, Park J, Jung J, Hahn Y, Cho JC, Madsen EL, Rodriguez-Valera F, Hyun JH, Rhee SK. Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya. Microbiome. 2019 Feb 20;7(1):29. doi: 10.1186/s40168-019-0643-4. Erratum in: Microbiome. 2019 Mar 11;7(1):38. PubMed PMID: 30786927; PubMed Central PMCID: PMC6383258.
Song GC, Im H, Jung J, Lee S, Jung MY, Rhee SK, Ryu CM. Plant growth-promoting archaea trigger induced systemic resistance in Arabidopsis thaliana against Pectobacterium carotovorum and Pseudomonas syringae. Environ Microbiol. 2019 Mar;21(3):940-948. doi: 10.1111/1462-2920.14486. Epub 2019 Jan 21. PubMed PMID: 30461142.
Jung MY, Kang MS, Lee KE, Lee EY, Park SJ. Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula. J Microbiol. 2019 Feb;57(2):107-112. doi: 10.1007/s12275-019-8500-5. Epub 2018 Nov 19. PubMed PMID: 30456756.
2018
Nguyen NL, Yu WJ, Gwak JH, Kim SJ, Park SJ, Herbold CW, Kim JG, Jung MY, Rhee SK. Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils. Front Microbiol. 2018 Aug 27;9:1982. doi: 10.3389/fmicb.2018.01982. eCollection 2018. PubMed PMID: 30210468; PubMed Central PMCID: PMC6119699.
Jung MY§, Islam MA§, Gwak JH, Kim JG, Rhee SK. Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil. Int J Syst Evol Microbiol. 2018 Oct;68(10):3084-3095. doi: 10.1099/ijsem.0.002926. Epub 2018 Aug 20. PubMed PMID: 30124400
Kim SH§, Kim JG§, Jung MY, Kim SJ, Gwak JH, Yu WJ, Roh SW, Kim YH, Rhee SK. Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater. Int J Syst Evol Microbiol. 2018 Jul;68(7):2258-2264. doi: 10.1099/ijsem.0.002823. Epub 2018 May 29. PubMed PMID: 29809120.
Jung MY, Kim SJ, Kim JG, Hong H, Gwak JH, Park SJ, Kim YH, Rhee SK. Comparative genomic analysis of Geosporobacter ferrireducens and its versatility of anaerobic energy metabolism. J Microbiol. 2018 May;56(5):365-371. doi:10.1007/s12275-018-7451-6. Epub 2018 May 2. PubMed PMID: 29721834
2017
Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C. Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4. PubMed PMID: 29098760.
Nguyen NL, Yu WJ, Yang HY, Kim JG, Jung MY, Park SJ, Roh SW, Rhee SK. A novel methanotroph in the genus Methylomonas that contains a distinct clade of soluble methane monooxygenase. J Microbiol. 2017 Oct;55(10):775-782. doi: 10.1007/s12275-017-7317-3. Epub 2017 Sep 28.
Si OJ, Yang HY, Hwang CY, Kim SJ, Choi SB, Kim JG, Jung MY, Kim SG, Roh SW, Rhee SK. Kiloniella antarctica sp. nov., isolated from a polynya of Amundsen Sea in Western Antarctic Sea. Int J Syst Evol Microbiol. 2017 Jul;67(7):2397-2402. doi: 10.1099/ijsem.0.001968. Epub 2017 Jul 15. PubMed PMID: 28708058.
2016
Jung MY, Kim JG, Damsté JSS, Rijpstra WIC, Madsen EL, Kim SJ, Hong H, Si OJ, 201, and Rhee SK. A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. Environ Microbiol Report. 2016 Dec;8(6):983-992. doi: 10.1111/1758-2229.12477.
Kim JG, Park SJ, Sinninghe Damsté JS, Schouten S, Rijpstra WI, Jung MY, Kim SJ, Gwak JH, Hong H, Si OJ, Lee S, Madsen EL, Rhee SK. Hydrogen peroxide detoxification is a key mechanism for growth of marine ammonia-oxidizing archaea. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7888-93. doi: 10.1073/pnas.1605501113.
Min UG, Kim SJ, Hong H, Kim SG, Gwak JH, Jung MY, Kim JG, Na JG, Rhee SK. Calculibacillus koreensis gen. nov., sp. nov., an anaerobic Fe(III)-reducing bacterium isolated from sediment of mine tailings. J Microbiol. 2016 Jun;54(6):413-9. doi: 10.1007/s12275-016-6086-8. Epub 2016 May 27.
Choi SB, Kim JG, Jung MY, Kim SJ, Min UG, Si OJ, Park SJ, Hwang CY, Park S, Lee S, Rhee SK. Cultivation and biochemical characterization of heterotrophic bacteria associated with phytoplankton bloom in the Amundsen sea polynya, Antarctica. Deep-Sea Res PT II. 2016. Jan. doi:10.1016/j.dsr2.2015.04.027
2015
Si OJ, Kim SJ, Jung MY, Choi SB, Kim JG, Kim SG, Roh SW, Lee S, Rhee SK. Leeuwenhoekiella polynyae sp. nov., isolated from a polynya of Amundsen Sea in Western Antarctic Sea. Int J Syst Evol Microbiol. Epub 2015 Mar 3.
Hong H, Kim SJ, Min UG, Lee YJ, Kim SG, Jung MY, Seo YS, Rhee SK. Geosporobacter ferrireducens sp. nov., an anaerobic iron-reducing bacterium isolated from an oil-contaminated site. Antonie Van Leeuwenhoek. 2015 Feb 7. [Epub ahead of print] PubMed PMID: 25663026.
Gwak JH, Kim SJ, Jung MY, Kim JG, Roh SW, Yim KJ, Lee YJ, Kim SG, Park SJ, Rhee SK. Draconibacterium filum sp. nov., a new species of the genus of Draconibacterium from sediment of the east coast of the Korean Peninsula. Antonie Van Leeuwenhoek. 2015 Jan 31. [Epub ahead of print] PubMed PMID: 25636945.
Kim JS, Lee KC, Kim DS, Ko SH, Jung MY, Rhee SK, Lee JS. Pyrosequencing analysis of a bacterial community associated with lava-formed soil from the Gotjawal forest in Jeju, Korea. Microbiologyopen. 2015 Jan 21. doi: 10.1002/mbo3.238. [Epub ahead of print] PubMed PMID: 25604185.
2014
Kim SJ, Park SJ, Jung MY, Kim JG, Min UG, Hong HJ, Rhee SK. Draft genome sequence of an aromatic compound-degrading bacterium, Desulfobacula sp. TS, belonging to the Deltaproteobacteria. FEMS Microbiol Lett. 2014 Nov;360(1):9-12.
Jung MY, Park SJ, Kim SJ, Kim JG, Sinninghe Damsté JS, Jeon CO, Rhee SK. A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon. Appl Environ Microbiol. 2014 Jun;80(12):3645-55.
Kim JG, Park SJ, Quan ZX, Jung MY, Cha IT, Kim SJ, Kim KH, Yang EJ, Kim YN, Lee SH, Rhee SK. Unveiling abundance and distribution of planktonic Bacteria and Archaea in a polynya in Amundsen Sea, Antarctica. Environ Microbiol. 2014 Jun;16(6):1566-78.
Kim SJ, Park SJ, Jung MY, Kim JG, Madsen EL, Rhee SK. An uncultivated nitrate-reducing member of the genus Herminiimonas degrades toluene. Appl Environ Microbiol. 2014 May;80(10):3233-43
Jung MY, Well R, Min D, Giesemann A, Park SJ, Kim JG, Kim SJ, Rhee SK. Isotopic signatures of N2O produced by ammonia-oxidizing archaea from soils. ISME J. 2014 May;8(5):1115-25
2013
Kim TY§, Kim SJ§, Park SJ, Kim JG, Cha IT, Jung MY, Lee SA, Roh SW, Yim KJ, Itoh T, Rhee SK. (2013) Natronomonas gomsonensis sp. nov., isolated from a solar saltern. Antonie Van Leeuwenhoek. 2013 Nov;104(5):627-35.
Cha IT, Park SJ, Kim SJ, Kim JG, Jung MY, Shin KS, Kwon KK, Yang SH, Seo YS, Rhee SK. Marinoscillum luteum sp. nov., isolated from sediment of the Tofua Arc of the Tonga Trench. Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3475-80
Jung MY§, Shin KS§, Kim SY, Kim SJ, Park SJ, Kim JG, Cha IT, Kim MN, Rhee SK. Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea. Antonie Van Leeuwenhoek. 2013 May;103(5):971-8
2012
Park SJ, Kim JG, Jung MY, Kim SJ, Cha IT, Ghai R, Martín-Cuadrado AB, Rodríguez-Valera F, Rhee SK. Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle. J Bacteriol. 2012 Dec;194(24):6948-9
Park SJ, Kim JG, Jung MY, Kim SJ, Cha IT, Kwon K, Lee JH, Rhee SK. Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, "Candidatus Nitrosopumilus koreensis" AR1, from Marine Sediment. J Bacteriol. 2012 Dec;194(24):6940-1
Park SJ, Kim DH, Jung MY, Kim SJ, Kim H, Kim YH, Chae JC, Rhee SK. Evaluation of a fosmid-clone-based microarray for comparative analysis of swine fecal metagenomes. J Microbiol. 2012 Aug;50(4):684-8
Damsté JS, Rijpstra WI, Hopmans EC, Jung MY, Kim JG, Rhee SK, Stieglmeier M, Schleper C. Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil. Appl Environ Microbiol. 2012 Oct;78(19):6866-74
Park SJ, Ghai R, Martín-Cuadrado AB, Rodríguez-Valera F, Jung MY, Kim JG, Rhee SK. Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria. J Bacteriol. 2012 Aug;194(15):4128-9
Jung MY§, Kim JG§, Park SJ, Rijpstra WI, Sinninghe Damsté JS, Madsen EL, Min D, Kim JS, Kim GJ, Rhee SK. Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ Microbiol. 2012 Jun;14(6):1528-43
2011
Jung MY, Park SJ, Min D, Kim JS, Rijpstra WI, Sinninghe Damsté JS, Kim GJ, Madsen EL, Rhee SK. Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Appl Environ Microbiol. 2011 Dec;77(24):8635-47
Kim BK, Jung MY, Yu DS, Park SJ, Oh TK, Rhee SK, Kim JF. Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1. J Bacteriol. 2011 Oct;193(19):5539-40
Park SJ, Pham VH, Jung MY, Kim SJ, Kim JG, Roh DH, Rhee SK. Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment. Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2045-51
Park SJ§, Park BJ§, Jung MY, Kim SJ, Chae JC, Roh Y, Forwick M, Yoon HI, Rhee SK. Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle. Microb Ecol. 2011 Oct;62(3):537-48
2010
Jung MY, Pham V, Park SJ, Kim SJ, Chae JC, Roh Y, Rhee SK. Metagenomic assessment of a sulfur-oxidizing enrichment culture derived from marine sediment. J Microbiol. 2010 Dec;48(6):739-47
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