Publicações

2026

• Mendes, I. S., Sales, N. G., McDevitt, A. D., Pompeu, P. S., de Andrade Neto, F., Hilário, H. O., & Carvalho, D. C. (2026). Unraveling Temporal Fish Diversity in a Neotropical Hydropower Reservoir: Comparing eDNA Metabarcoding to Traditional Fishing Methods. Environmental DNA, 8(2), e70278.

• Mendes, G. A., Silva, P. C., Hilário, H. O., & Carvalho, D. C. (2026). Hydrology-induced changes drive fish eDNA ecology in a neotropical reservoir. Hydrobiologia, 1-14.

2025

• Carvalho, D. C., Hilário, H. O., Nascimento, I. H., Berger, G. C., & Pompeu, P. S. (2025). Low‐Effort eDNA Sampling Reveals Fish Community Patterns in a Neotropical River Basin. Environmental DNA, 7(4), e70164.

• De la Ossa‐Guerra, L. E., Limeira, D. M., Dalcin, R. H., Hilário, H. O., Carvalho, D. C., & Artoni, R. F. (2025). Illuminating the Dark: Using eDNA Metabarcoding to Study the Unique Ichthyofauna of the Furnas Formation Sinkholes. Environmental DNA, 7(4), e70156.

• Dumans, A. T., Selvatti, A. P., Sarzi, D. S., Furtado, C., Drummond, G., Coutinho, M., ... & Prosdocimi, F. (2025). The complete mitochondrion genome of the Hoge’s Side-necked turtle Ranacephala hogei (Chelidae), a critically endangered species from South America. Genetics and Molecular Biology, 48(3), e20240203.

2024

• Gonçalves, A. S., Netto-Ferreira, A. L., Saldanha, S. C., Rocha, A. C., Gales, S. M., Silva, D. J., ... & Ready, J. S. (2024). Convergent and environmentally associated chromatic polymorphism in Bryconops Kner, 1858 (Ostariophysi: Characiformes: Iguanodectidae). Plos one, 19(2), e0298170.

• Protocolo de coleta de amostras para eDNA metabarcoding usando filtros Sterivex-LGC PUC Minas.

• Sample collection protocol for eDNA metabarcoding using Sterivex filters-LGC PUC Minas.

2023

• Carvalho, D. C., & Leal, C. G. (2023). Steps forward in biomonitoring 2.0: eDNA Metabarcoding and community‐level modelling allow the assessment of complex drivers of Neotropical fish diversity. Global Change Biology, 29(7), 1688-1690.

• Selvatti, A. P., Moreira, F. R. R., Carvalho, D. C., Prosdocimi, F., de Moraes Russo, C. A., & Junqueira, A. C. M. (2023). Phylogenomics reconciles molecular data with the rich fossil record on the origin of living turtles. Molecular Phylogenetics and Evolution, 183, 107773.

• Hilário, H. O., Mendes, I. S., Guimaraes Sales, N., & Carvalho, D. C. (2023). DNA metabarcoding of mock communities highlights potential biases when assessing Neotropical fish diversity. Environmental DNA.

• Brunes, T. O., Pinto, F. C., Taucce, P. P., Santos, M. T. T., Nascimento, L. B., Carvalho, D. C., ... & Leite, F. S. (2023). Traditional taxonomy underestimates the number of species of Bokermannohyla (Amphibia: Anura: Hylidae) diverging in the mountains of southeastern Brazil since the Miocene. Systematics and Biodiversity, 21(1), 2156001.

• Teixeira, D. F., Hilário, H. O., Santos, G. B., & Carvalho, D. C. (2023). DNA metabarcoding assessment of Neotropical ichthyoplankton communities is marker‐dependent. Ecology and Evolution, 13(10), e10649.

• Pompeu, P. S., Wouters, L., Hilário, H. O., Loures, R. C., Peressin, A., Prado, I. G., ... & Carvalho, D. C. (2023). Inadequate Sampling Frequency and Imprecise Taxonomic Identification Mask Results in Studies of Migratory Freshwater Fish Ichthyoplankton. Fishes, 8(10), 518.

2022

• Carvalho, D. C. (2022). Ichthyoplankton DNA metabarcoding: Challenges and perspectives. Molecular Ecology, 31(6), 1612-1614.

• Mendes, I. S., Melo, B. F., Damasceno, J. S., Teixeira, D. F., & Carvalho, D. C. (2022). Phylogeography of Hypomasticus copelandii (Teleostei, Anostomidae) Reveals Distinct Genetic Lineages along Atlantic Coastal Drainages of Eastern Brazil. Diversity, 14(1), 29.

2021

• Sales, N. G., Wangensteen, O., Carvalho, D. C., Deiner, K., Praebel, K., Coscia, I., ... & Mariani, S. (2021). Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding. Science of the Total Environment (754)

• Santos, R. P., Melo, B. F., Yazbeck, G. M., Oliveira, R. S., Hilario, H. O., Prosdocimi, F., & Carvalho, D. C. (2021). Diversification of Prochilodus in the eastern Brazilian Shield: Evidence from complete mitochondrial genomes (Teleostei, Prochilodontidae). Journal of Zoological Systematics and Evolutionary Research, 59(5), 1053-1063.

• Perini, V. R., Paschoalini, A. L., Bazzoli, N., Rizzo, E., & Carvalho, D. C. (2021). Metapopulation dynamics of the migratory fish Prochilodus lineatus (Characiformes: Prochilodontidae) in a lotic remnant of the Grande River, Southeastern Brazil. Neotropical Ichthyology, 19, e200046.

2020

• Milan, D. T., Mendes, I. S., Damasceno, J. S., Teixeira, D. F., Sales, N. G., & Carvalho, D. C. (2020). New 12S metabarcoding primers for enhanced Neotropical freshwater fish biodiversity assessment. Scientific reports, 10(1), 1-12.

• Farias, R. S., Silva, B. C., Nascimento, W. V., Silva, G. C., Luz, R. K., Prosdocimi, F., ... & Coimbra, M. R. (2020). Genetic diversity and aquaculture conservation for a threatened Neotropical catfish. Neotropical Ichthyology, 18(3).

• Teixeira, D. F., Neto, F. R. A., Gomes, L. C., Beheregaray, L. B., & Carvalho, D. C. (2020). Invasion dynamics of the white piranha (Serrasalmus brandtii) in a Neotropical river basin. Biological Invasions, 22(3), 983-995.

2019

• Pinheiro et al (2019) Integrative approach detects natural hybridization of sympatric lambaris species and emergence of infertile hybrids. Scientific Reports

• Sales, N. G., Wangensteen, O. S., Carvalho, D. C., & Mariani, S. (2018). Influence of Preservation Methods, Sample Medium and Sampling Time on eDNA Recovery in a Neotropical River. Environmental DNA, edn3.14. (https://onlinelibrary.wiley.com/doi/full/10.1002/edn3.14)

• Mendes, I. S., Prosdocimi, F., Schomaker-Bastos, A., Furtado, C., Ferreira, R. L., Pompeu, P. S., & Carvalho, D. C. On the evolutionary origin of Neotropical cavefish Ancistrus cryptophthalmus (Siluriformes, Loricariidae) based on the mitogenome and genetic structure of cave and surface populations. Hydrobiologia, 1-15. (https://link.springer.com/article/10.1007/s10750-019-04033-y)

2018

• Carvalho, D. C., & Beheregaray, L. B. (2018). Conservation genetics of the threatened catfish Conorhynchos conirostris (Siluriformes: incertae sedis), an evolutionary relict endemic to the São Francisco River Basin, Brazil. Conservation Genetics, 19(5), 1223-1230.

• Borges, V. S., Santiago, P. C., Lima, N. G., Coutinho, M. E., Eterovick, P. C., & Carvalho, D. C. (2018). Evolutionary Significant Units within Populations of Neotropical Broad-Snouted Caimans (Caiman latirostris, Daudin, 1802). Journal of herpetology, 52(3), 282-288.

• Sales, N. G., Mariani, S., Salvador, G. N., Pessali, T. C., & Carvalho, D. C. (2018). Hidden diversity hampers conservation efforts in a highly impacted neotropical river system. Frontiers in genetics, 9.

• Sales, N. G., Pessali, T. C., Neto, F. R. A., & Carvalho, D. C. (2018). Introgression from non-native species unveils a hidden threat to the migratory Neotropical fish Prochilodus hartii. Biological Invasions, 20(3), 555-566.

2017

• Ramirez, J. L., Birindelli, J. L., Carvalho, D. C., Affonso, P. R., Venere, P. C., Ortega, H., ... & Galetti Jr, P. M. (2017). Revealing hidden diversity of the underestimated neotropical ichthyofauna: DNA barcoding in the recently described genus Megaleporinus (Characiformes: Anostomidae). Frontiers in genetics, 8, 149.

• Carvalho, D. C., Palhares, R. M., Drummond, M. G., & Gadanho, M. (2017). Food metagenomics: Next generation sequencing identifies species mixtures and mislabeling within highly processed cod products. Food control, 80, 183-186.

• Carvalho, D. C., Guedes, D., da Gloria Trindade, M., Coelho, R. M. S., & de Lima Araujo, P. H. (2017). Nationwide Brazilian governmental forensic programme reveals seafood mislabelling trends and rates using DNA barcoding. Fisheries research, 191, 30-35.

• Prosdocimi, F., Perini, V., Dumans, A. T. N., Furtado, C., & de Carvalho, D. C. (2017). The complete mitochondrial genome of the surubim Pseudoplatystoma corruscans (Siluriformes: Pimelodidae) and mitochondrial phylogenomics of catfishes confirm monophyly of Siluriformes families. Conservation genetics resources, 9(4), 535-539.

2016

• Carvalho, D. C., Perini, V. D. R., Bastos, A. S., Costa, I. R. D., Luz, R. K., Furtado, C., & Prosdocimi, F. (2016). The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea. Genetics and molecular biology, 39(4), 674-677.

• Attard, C. R. M., Möller, L. M., Sasaki, M., Hammer, M. P., Bice, C. M., Brauer, C. J., ... & Beheregaray, L. B. (2016). A novel holistic framework for genetic‐based captive‐breeding and reintroduction programs. Conservation Biology, 30(5), 1060-1069.

• Fernandes, G. W., Goulart, F. F., Ranieri, B. D., Coelho, M. S., Dales, K., Boesche, N., ... & Fernandes, S. (2016). Deep into the mud: ecological and socio-economic impacts of the dam breach in Mariana, Brazil. Natureza & Conservação, 14(2), 35-45.

• Ramirez, J. L., Carvalho‐Costa, L. F., Venere, P. C., Carvalho, D. C., Troy, W. P., & Galetti Jr, P. M. (2016). Testing monophyly of the freshwater fish Leporinus (Characiformes, Anostomidae) through molecular analysis. Journal of fish biology, 88(3), 1204-1214.

• Pugedo, M. L., de Andrade Neto, F. R., Pessali, T. C., Birindelli, J. L. O., & Carvalho, D. C. (2016). Integrative taxonomy supports new candidate fish species in a poorly studied neotropical region: the Jequitinhonha River Basin. Genetica, 144(3), 341-349.

2015

• Carvalho, D. C., Palhares, R. M., Drummond, M. G., & Frigo, T. B. (2015). DNA Barcoding identification of commercialized seafood in South Brazil: a governmental regulatory forensic program. Food Control, 50, 784-788.

• Gomes, L. C., Pessali, T. C., Sales, N. G., Pompeu, P. S., & Carvalho, D. C. (2015). Integrative taxonomy detects cryptic and overlooked fish species in a neotropical river basin. Genetica, 143(5), 581-588.

• Becker, R. A., Sales, N. G., Santos, G. M., Santos, G. B., & Carvalho, D. C. (2015). DNA barcoding and morphological identification of neotropical ichthyoplankton from the Upper Paraná and São Francisco. Journal of fish biology, 87(1), 159-168.

2014

• Rodriguez-Zarate, C. J., Carvalho, D. C., Hammer, M. P., & Beheregaray, L. B. (2014). A set of microsatellite markers for the threatened Murray hardyhead, Craterocephalus fluviatilis (Pisces: Atherinidae) from the southern Murray–Darling Basin. Conservation genetics resources, 6(2), 473-475.

• Perini, V. D. R., de Carvalho, D. C., Beheregaray, L. B., & Prosdocimi, F. (2014). The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing. Mitochondrial DNA Part A, 27(1), 380-382.

• Carvalho, D. C., Oliveira, D. A., Sampaio, I., & Beheregaray, L. B. (2014). Analysis of propagule pressure and genetic diversity in the invasibility of a freshwater apex predator: the peacock bass (genus Cichla). Neotropical Ichthyology, 12(1), 105-116.

• Perini, V. D. R., de Carvalho, D. C., Beheregaray, L. B., & Prosdocimi, F. (2016). The complete mitochondrial genome of the southern purple-spotted gudgeon Mogurnda adspersa (Perciformes: Eleotridae) through pyrosequencing. Mitochondrial DNA Part A, 27(1), 380-382.

2013

• Torres, R. A., Feitosa, R. B., Carvalho, D. C., Freitas, M. O., Hostim-Silva, M., & Ferreira, B. P. (2013). DNA barcoding approaches for fishing authentication of exploited grouper species including the endangered and legally protected goliath grouper Epinephelus itajara. Scientia Marina, 77(3), 409-418.

• Cardoso de Carvalho, D., Seerig, A. S., Dos Santos Alves Figueiredo Brasil, B., Vieira Crepaldi, D., & Aparecida Andrade de Oliveria, D. (2013). Molecular identification of the hybrid between the catfish species Pseudoplatystoma corruscans and Pseudoplatystoma reticulatum using a set of eight microsatellite markers. Journal of fish biology, 83(3), 671-676.

• Bastos, V. A. A., Lopes Ferreira, R., Carvalho, D. C., Pugedo, M. L., & de Matos Alves Pinto, L. (2013). The cave environment influencing the lipid profile and hepatic lipogenesis of the fish Ancistrus cryptophthalmus Reis, 1987 (Siluriformes: Loricariidae). International Journal of Speleology, 42(1), 3.

2012

• Carvalho, D. C., Oliveira, D. A., Beheregaray, L. B., & Torres, R. A. (2012). Hidden genetic diversity and distinct evolutionarily significant units in an commercially important Neotropical apex predator, the catfish Pseudoplatystoma corruscans. Conservation Genetics, 13(6), 1671-1675.

• Carvalho, D. C., Sasaki, M., Hammer, M. P., & Beheregaray, L. B. (2012). Development of 18 microsatellite markers for the southern purple-spotted gudgeon (Mogurnda adspersa) from the lower Murray-Darling Basin through 454 pyrosequencing. Conservation Genetics Resources, 4(2), 339-341.

• Brasil, B. S., Nunes, R. L., Bastianetto, E., Drummond, M. G., Carvalho, D. C., Leite, R. C., ... & Oliveira, D. A. (2012). Genetic diversity patterns of Haemonchus placei and Haemonchus contortus populations isolated from domestic ruminants in Brazil. International journal for parasitology, 42(5), 469-479.

• Carvalho, D. C., Hammer, M. P., & Beheregaray, L. B. (2012). Isolation and PCR-multiplex genotyping of 18 novel microsatellite markers for the threatened southern pygmy perch (Nannoperca australis). Conservation genetics resources, 4(1), 15-17.

• Prosdocimi, F., de Carvalho, D. C., de Almeida, R. N., & Beheregaray, L. B. (2012). The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae). Molecular biology reports, 39(3), 2767-2772.

2011

• Carvalho, D. C., Rodríguez-Zárate, C. J., Hammer, M. P., & Beheregaray, L. B. (2011). Development of 21 microsatellite markers for the threatened Yarra pygmy perch (Nannoperca obscura) through 454 shot-gun pyrosequencing. Conservation genetics resources, 3(4), 601-604.

• Carvalho, D. C., Neto, D. A., Brasil, B. S., & Oliveira, D. A. (2011). DNA barcoding unveils a high rate of mislabeling in a commercial freshwater catfish from Brazil. Mitochondrial DNA, 22(sup1), 97-105.

• Carvalho, D. C., Oliveira, D. A., Pompeu, P. S., Leal, C. G., Oliveira, C., & Hanner, R. (2011). Deep barcode divergence in Brazilian freshwater fishes: the case of the São Francisco River basin. Mitochondrial Dna, 22(sup1), 80-86.

• Carvalho, D. C., & Beheregaray, L. B. (2011). Rapid development of microsatellites for the endangered Neotropical catfish Conorhynchus conirostris using a modest amount of 454 shot-gun pyrosequencing. Conservation genetics resources, 3(2), 373-375.