Publications
Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves CE, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal C, Zakarian C, Goodwin S, Jensen TD, Robb E; 1000 Genomes ONT Sequencing Consortium; University of Washington Center for Rare Disease Research (UW-CRDR); Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium; McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN Jr, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE. High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. Genome Res. 2024 Oct 2:gr.279273.124. doi: 10.1101/gr.279273.124. Epub ahead of print. PMID: 39358015.
Yang L, Metzger GA, Padilla Del Valle R, Delgadillo Rubalcaba D, McLaughlin RN Jr. Evolutionary insights from profiling LINE-1 activity at allelic resolution in a single human genome. EMBO J. 2024 Jan;43(1):112-131. doi: 10.1038/s44318-023-00007-y. Epub 2023 Dec 18. PMID: 38177314; PMCID: PMC10883270.
Rosenberg MI, Greenstein E, Buchkovich M, Peres A, Santoni-Rugiu E, Yang L, Mikl M, Vaksman Z, Gibbs DL, Reshef D, Salovin A, Irwin MS, Naranjo A, Ulitsky I, de Alarcon PA, Matthay KK, Weigman V, Yaari G, Panzer JA, Friedman N, Maris JM. Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma. Cell Rep. 2023 Aug 29;42(8):112879. doi: 10.1016/j.celrep.2023.112879. Epub 2023 Aug 2. PMID: 37537844; PMCID: PMC10551040.
Wang Y, Deng Y, Cao L, Zhang J, Yang L. Retrospective memory integration accompanies reconfiguration of neural cell assemblies. Hippocampus. 2022 Mar;32(3):179-192. doi: 10.1002/hipo.23399. Epub 2021 Dec 21. PMID: 34935236.
Yang L, Malhotra R, Chikhi R, Elleder D, Kaiser T, Rong J, Medvedev P, Poss M. Recombination Marks the Evolutionary Dynamics of a Recently Endogenized Retrovirus. Mol Biol Evol. 2021 Dec 9;38(12):5423-5436. doi: 10.1093/molbev/msab252. PMID: 34480565; PMCID: PMC8662619.
Yang L, Emerman M, Malik HS, McLaughlin RN Jnr. Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates. Elife. 2020 Jun 1;9:e58436. doi: 10.7554/eLife.58436. PMID: 32479260; PMCID: PMC7263822.
Wang Y, Gao Y, Deng Y, Yang L. Modeling of Brain-Like Concept Coding with Adulthood Neurogenesis in the Dentate Gyrus. Comput Intell Neurosci. 2019 Nov 3;2019:2367075. doi: 10.1155/2019/2367075. PMID: 31814816; PMCID: PMC6877936.
Wichman HA, Scott L, Howell EK, Martinez AR, Yang L, Baker RJ. Flying Around in the Genome: Characterization of LINE-1 in Chiroptera. Spec Publ Tex Tech Univ Mus. 2019 Oct 11;71:379-392. PMID: 32095030; PMCID: PMC7039574.
Li W, Yang L, Harris RS, Lin L, Olson TL, Hamele CE, Feith DJ, Loughran TP Jr, Poss M. Retrovirus insertion site analysis of LGL leukemia patient genomes. BMC Med Genomics. 2019 Jun 17;12(1):88. doi: 10.1186/s12920-019-0549-9. PMID: 31208405; PMCID: PMC6580525.
Yang L, Scott L, Wichman HA. Tracing the history of LINE and SINE extinction in sigmodontine rodents. Mob DNA. 2019 May 21;10:22. doi: 10.1186/s13100-019-0164-5. PMID: 31139266; PMCID: PMC6530004.
Li W, Lin L, Malhotra R, Yang L, Acharya R, Poss M. A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations. PLoS Comput Biol. 2019 Mar 28;15(3):e1006564. doi: 10.1371/journal.pcbi.1006564. PMID: 30921327; PMCID: PMC6456218.
McLaughlin RN Jr, Young JM, Yang L, Neme R, Wichman HA, Malik HS. Positive selection and multiple losses of the LINE-1-derived L1TD1 gene in mammals suggest a dual role in genome defense and pluripotency. PLoS Genet. 2014 Sep 11;10(9):e1004531. doi: 10.1371/journal.pgen.1004531. PMID: 25211013; PMCID: PMC4161310.
Yang L, Brunsfeld J, Scott L, Wichman H. Reviving the dead: history and reactivation of an extinct l1. PLoS Genet. 2014 Jun 26;10(6):e1004395. doi: 10.1371/journal.pgen.1004395. PMID: 24968166; PMCID: PMC4072516.