PUBLICATIONS

1.  Lee H, Yeo H, Park J, Kang K, Yi S-J, and Kim K. Adaptation responses to salt stress in the gut of Poecilia reticulata. Animal Cells and Systems 29(1), 84-99.

2. Lee H, Hyun TK, Yi S-J, and Kim K. Effects of shiitake mushroom stipe extracts on osteoclast differentiation and bone health. J Biomed Transl Res 26(1), 1-10.

1. Yi S-J, Lim J, and Kim K.  Exploring epigenetic strategies for the treatment of osteoporosis. Molecular Biology Reports 51:398.

2. Cho S-H, Kim H-S, Ahn J, Ryu B, Jea J-G, Lee K, Kim K, Ahn G, Lee WW, Choi K-M, and Kim K-N. Effect of Ishige okamurae extract on osteoclastogenesis in vitro and in vivo. Marine Drugs 22, 137.

3. Lee J, You C, Kwon G, Noh J, Lee K, Kim K, Kang K, and Kang K. Integration of epigenomic and transcriptomic profiling uncovers EZH2 target genes linked to cysteine metabolism in hepatocellular carcinoma. Cell Death & Disease 15(11):801. 

4. Park J, Kim S, Jung H-Y, Bae EH, Shin M, Park J-I, Choi S-Y, Yi S-J, and Kim K. PRDX1-TLR4-p65 axis inhibits RANKL-mediated osteoclast differentiation. iScience 27, 111455.

5. Heo G, Jeong S, Park S, Kim SJ, Lee Y, Woo SJ, Kim K, Park B-H, Rhee SH, and Im E. Myeloid-specific deletion of autotaxin inhibits rheumatoid arthritis and osteoclastogenesis. Frontiers in Immunology 10.3389

6. Lee S, Lee H, Jang Y-J, Lee K, Kim H-J, Lee JY, Kim J-M, Park S, Song JS, Lee JH, Hyun TK, Park J-I, Yi S-J, and Kim K. Denatonium inhibits RANKL-induced osteoclast differentiation and rescues the osteoporotic phenotype by blocking p65 signaling pathway. Molecular Medicine 30:248

1. Ghate NB, Kim S, Mehmood R, Shin Y, Kim K, and An W.  VprBP/DCAF1 regulates p53 function and stability through site-specific phosphorylation. Oncogene 42:1405-1416.

2. Lee C-J, Lee H-Y, Yu Y-S, Ryu K-B, Lee H, Kim K, Shin SY, Gill Y-C and Cho S-J.  Brain compartmentalization based on transcriptome analyses and its gene expression in Octopus minor. Brain Struct Funct 228(5): 1283-1294.

3. Yi S-J, Jang Y-J, Lee S, Cho S-J, Kang K, Park J-I, Chae H-J, Kim H-R, and Kim K. TMBIM6 deficiency leads to bone loss by accelerating osteoclastogenesis. Redox Biology 64: 102804  BRIC 한빛사 등재

4. Lee K, Yun S, Park J, Lee S, Carcaboso AM, Yi S-J, and Kim K. Dimethyl alpha-ketoglutarate inhibits proliferation in diffuse intrinsic pontine glioma by reprogramming epigenetic and transcriptional networks. BBRC 677: 6-12

1. Park J, Lee K, , Kim K, and Yi S-J. The role of histone modifications: From neurodevelopment to neurodiseases. Signal Transduction and Targeted Therapy 7:217. BRIC 한빛사 등재

2. Kim J, Lee H, Yi S-J, and Kim K. Gene Regulation by Histone-Modifying Enzymes Under Hypoxic Conditions: A Focus on Histone Methylation and Acetylation. Experimental & Molecular Medicine  https://doi.org/10.1038/s12276-022-00812-1.  BRIC 한빛사 등재 (Invited Review)

1.  Kim W-J, Lee K, Lee D, Kim H-C, Nam B-H, Jung H, Yi S-J, and Kim K. Transcriptome profiling of olive flounder responses under acute and chronic heat stress. Genes Genomics 43(2):151-159.

2. Yi S-J, Jang Y-J, Kim H-J, Lee K, Lee H, Kim Y, Kim J, Hwang SY, Song JS, Okada H, Park J-I, Kang K, and Kim K. The KDM4B–CCAR1–MED1 axis is a critical regulator of osteoclast differentiation and bone homeostasis. Bone Res 9(1):27. BRIC 한빛사 등재 

3. Jin S, Bang S, Ahn MA, Lee K, Kim K, and Hyun K. Overproduction of anthocyanin in ginseng hairy roots enhances their antioxidant, antimicrobial, and anti-elastase activities. J Plant Biotechnol 48:100-105.

1. Kim J, Lee H, Roh YJ, Kim H-U, Shin D, Kim S, Son J, Lee A, Kim M, Park J, Hwang SY, Kim K, Lee YK, Jung HS, Hwang KY, and Lee BC. Structural and kinetic insights into flavin-containing monooxygenase and calponin-homology domains in human MICAL3. IUCrJ 7(Pt 1):90-99.

2. Lee H, Lee K, Lee S, Lee J, Jeong WT, Lim HB, Hyun TK, Yi S-J, and Kim K. Ethyl Acetate Fraction of Aqueous Extract of Lentinula edodes Inhibits Osteoclastogenesis by Suppressing NFATc1 Expression. Int J Mol Sci 21(4):1347.

3. Lee K, Jang Y-J, Lee H, Kim E, Kim Y, Yoo T-K, Hyun T-K, Park J-I, Yi S-J, and Kim K. Transcriptome Analysis Reveals That Abeliophyllum distichum Nakai Extract Inhibits RANKL-Mediated Osteoclastogenensis Mainly Through Suppressing Nfatc1 Expression. Biology (Basel) 9(8):212.

4. Yi S-J and Kim K. New Insights into the Role of Histone Changes in Aging. Int J Mol Sci 21(21):8241.

1. Lee J, Lee J, Hwang E, Kim H-J, Lee S, Lee H, Hwang SY, Cho S-J, Yi S-J, and Kim K. An Efficient and Rapid Two-step Purification Method for Active Human Macrophage Colony-stimulating Factor from Escherichia coli. Biotechnology and Bioprocess Engineering 23:670-678.

2. Kim S-H, Yi S-J# , Lee H, Kim J-H, Oh M-J, Song E-J, Kim K* , and Jhun BH. β 2-Adrenergic receptor (β 2-AR) agonist formoterol suppresses differentiation of L6 myogenic cells by blocking PI3K-AKT pathway. Anim Cells Syst (Seoul) 23(1):18-25. (#: Co-first, *: Co-correspondence)

3. Lee J, Han S, Lee H-Y, Jeong B, Heo T-Y, Hyun TK, Kim K, Je BI, Lee H, Shim D, Park SJ, and Ryu H. Brassinosteroids facilitate xylem differentiation and wood formation in tomato. Planta 249(5):1391-1403.

4. Yi S-J, Lee H, Lee J, Lee K, Kim J, Kim Y, Park J-I, and Kim K. Bone Remodeling: Histone Modifications as Fate Determinants of Bone Cell Differentiation. Int J Mol Sci 20(13):3147.

5. Kim H, Shim D, Moon S, Lee J, Bae W, Choi H, Kim K, and Ryu H. Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1-TPL-HDA19 co-repressor complex. Planta 250(4):1371-1377.

6. Kim Y, Kim J, Lee H, Shin W-R, Lee S, Lee J, Park J-I, Jhun BH, Kim Y-H, Yi S-J, and Kim K. Tetracycline Analogs Inhibit Osteoclast Differentiation by Suppressing MMP-9-Mediated Histone H3 Cleavage. Int J Mol Sci 20(16):4038.

1.Yi S-J, Hwang SY, Oh M-J, Kim Y-H, Ryu H, Rhee S-K, Jhun BH, and Kim K. Oncogenic N-Ras Stimulates SRF-Mediated Transactivation via H3 Acetylation at Lysine 9. Biomed Res Int 2018:5473725.

2.Yi S-J, Hwang SY, Oh M-J, Kim K*, and Jhun BH.  Carboxy-terminal domain of Cas differentially modulates c-Jun expression, DNA synthesis, and membrane ruffling induced by insulin, EGF, and IGF-1. Anim Cells Syst (Seoul) 22(2):69-75. (*: Co-correspondence)

3.Yi S-J and Kim K. Histone tail cleavage as a novel epigenetic regulatory mechanism for gene expression. BMB Rep 51(5):211-218.

4. Lee J, Shim D, Moon S, Kim H, Bae W, Kim K, Kim Y-H, Rhee S-K, Hong CP, Hong S-Y, Lee Y-J, Sung J, and Ryu H. Genome-wide transcriptomic analysis of BR-deficient Micro-Tom reveals correlations between drought stress tolerance and brassinosteroid signaling in tomato. Plant Physiol Biochem 127:553-560.

5.Kim K, Shin Y, Kim J, Ulmer TS, and An W. H3K27me1 is essential for MMP-9-dependent H3N-terminal tail proteolysis during osteoclastogenesis. Epigenetics Chromatin 11(1):23.

6.Kim J, Shin Y, Lee S, Kim M, Punj V, Lu JF, Shin H, Kim K, Ulmer TS, Koh J, Jeong D, and An W. Regulation of Breast Cancer-Induced Osteoclastogenesis by MacroH2A1.2 Involving EZH2-Mediated H3K27me3. Cell Rep 24(1):224-237.

7.Kim J, Shin Y, Lee S, Kim MY, Punj V, Shin H-I, Kim K, Koh J-M, Jeong D, and An W. MacroH2A1.2 inhibits prostate cancer-induced osteoclastogenesis through cooperation with HP1α and H1.2. Oncogene 37(43):5749-5765.

8.Shin W-R, Sekhon SS, Kim S-G, Rhee SJ, Yang GN, Won K, Rhee S-K, Ryu H, Kim K, Min J, Ahn J-Y, and Kim Y-H. Aptamer-Based Pathogen Monitoring for Salmonella enterica ser. Typhimurium. J Biomed Nanotechnol 14(11):1992-2002.

1. Yi S-J, Jhun BH, and Kim K. Adverse effects of farnesyltransferase inhibitors on insulin actions. J Biomed Transl Res 18(3):113-117.

1.Kim K, Punj V, Kim J-M, Lee S, Ulmer TS, Lu W, Rice JC, and An W. MMP-9 facilitates selective proteolysis of the histone H3 tail at genes necessary for proficient osteoclastogenesis. Genes Dev 30(2):208-219. BRIC 한빛사 등재 

1.Kim J-M, Kim K, Schmidt T, Punj V, Tucker H, Rice JC, Ulmer TS, and An W. Cooperation between SMYD3 and PC4 drives a distinct transcriptional program in cancer cells. Nucleic Acids Res 43(18):8868-8883.

2.Kim J-M, Kim K, Punj V, Liang G, Ulmer TS, Lu W, and An W. Linker histone H1.2 establishes chromatin compaction and gene silencing through recognition of H3K27me3. Sci Rep 5:16714.

1.An D, Kim K#*, and Lu W (2014). Defective entry into mitosis 1 (Dim1) negatively regulates osteoclastogenesis by inhibiting the expression of nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 (NFATc1). J Biol Chem 289(35):24366-24377. (#: Co-first, *: Co-correspondence)

2.Kim J-M, Heo K, Choi J, Kim K, and An W (2013). The histone variant MacroH2A regulates Ca(2+) influx through TRPC3 and TRPC6 channels. Oncogenesis 2(10):e77.

3.Kim K, Lee B, Kim J, Choi J, Kim J-M, Xiong Y, Roebert RG, and An W (2013). Linker Histone H1.2 cooperates with Cul4A and PAF1 to drive H4K31 ubiquitylation-mediated transactivation. Cell Rep 5(6):1690-1703.

4.Kim K, Punj V, Choi J, Heo K, Kim J-M, Laird PW, and An W (2013). Gene dysregulation by histone variant H2A.Z in bladder cancer. Epigenetics Chromatin 6(1):34.

5.Kim K, Kim J-M, Kim J-S, Choi J, Lee YS, Neamati N, Song JS, Heo K, and An W (2013). VprBP has intrinsic kinase activity targeting histone H2A and represses gene transcription. Mol Cell 52(3):459-467. BRIC 한빛사 등재 

6.Heo K, Kim J-S, Kim K, Kim H, Choi J, Ynag K, and An W (2012). Cell-penetrating H4 tail peptides potentiate p53-mediated transactivation via inhibition of G9a and HDAC1. Oncogene 32(20):2510-2520.

7.Kim K, Jeong KW, Kim H, Choi J, Lu W, Stallcup MR, and An W (2012). Functional interplay between p53 acetylation and H1.2 phosphorylation in p53-regulated transcription. Oncogene 31(39):4290-4301.

8.Kim K, Heo K, Choi J, Jaskson S, Kim H, Xiong Y, and An W (2012). Vpr-binding protein antagonizes p53-mediated transcription via direct interaction with H3 tail. Mol Cell Biol 32(4):783-796.

9.Kim H, Kim K#, Choi J, Heo K, Baek HJ, Roeder RG, and An W (2012). p53 requires an intact C-terminal domain for DNA binding and transactivation. J Mol Biol 415(5):843-854. (#: Co-first)

10.Jeong KW, Kim K, Situ AJ, Ulmer TS, An W, and Stallcup MR (2011). Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation. Nat Struct Mol Biol 18(12):1358-1365. BRIC 한빛사 등재 

11.Choi J, Kim H, Kim K, Lee B, Lu W, and An W (2011). Selective requirement of H2B N-Terminal tail for p14ARF-induced chromatin silencing. Nucleic Acids Res 39(21):9167-9180.

12.Kim H, Heo K, Choi J, Kim K, and An W (2011). Histone variant H3.3 stimulates HSP70 transcription through cooperation with HP1γ. Nucleic Acids Res 39(19):8329-8341.

13.Kim H, Heo K, Kim JH, Kim K, Choi J, and An W (2009). Requirement of histone methyltransferase SMYD3 for estrogen receptor-mediated transcription. J Biol Chem 284(30):19867-19877.

14.Kim K, Choi J, Heo K, Kim H, Levens D, Kohno K, Johnson EM, Brock HW, and An W (2008). Isolation and characterization of a novel H1.2 complex that acts as a repressor of p53-mediated transcription. J Biol Chem 283(14):9113-9126.

15.Heo K, Kim H, Choi SH, Choi J, Kim K, Gu J, Lieber MR, Yang AS, and An W (2008). FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16. Mol Cell 30(1):86-97. BRIC 한빛사 등재 

16.Choi J, Kim B, Heo K, Kim K, Kim H, Zhan Y, Ranish JA, and An W (2007). Purification and characterization of cellular proteins associated with histone H4 tails. J Biol Chem 282(29):21024-21031.

17.Heo K, Kim B, Kim K, Choi J, Kim H, Zhan Y, Ranish JA, and An W (2007). Isolation and characterization of proteins associated with histone H3 tails in vivo. J Biol Chem 282(21):15476-15483.